Contig 004997:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003D24Sequence417004997 (13)ref|XP_007028858.1|8e-18Transducin/WD40 repeat-like superfamily protein isoform 2, partial [Theobroma c698004997 (13)ref|XP_009596754.1|3e-50PREDICTED: protein LST8 homolog [Nicotiana tomentosiformis] ref|XP_009767070.1|
JMSF008K02Sequence156004997 (13)ref|XP_007028858.1|1e-20Transducin/WD40 repeat-like superfamily protein isoform 2, partial [Theobroma c
JMSF008L02Sequence420004997 (13)ref|XP_007028858.1|3e-19Transducin/WD40 repeat-like superfamily protein isoform 2, partial [Theobroma c741004997 (13)ref|XP_009596754.1|1e-107PREDICTED: protein LST8 homolog [Nicotiana tomentosiformis] ref|XP_009767070.1|
JMSF010M09Sequence294004997 (13)756004997 (13)ref|XP_009596754.1|2e-100PREDICTED: protein LST8 homolog [Nicotiana tomentosiformis] ref|XP_009767070.1|
JMSF015B23Sequence252004997 (13)766004997 (13)ref|XP_009596754.1|7e-50PREDICTED: protein LST8 homolog [Nicotiana tomentosiformis] ref|XP_009767070.1|
JMSF017D14Sequence418004997 (13)tpg|DAA42242.1|1e-30TPA: hypothetical protein ZEAMMB73_993099 [Zea mays]802004997 (13)ref|XP_009596754.1|1e-147PREDICTED: protein LST8 homolog [Nicotiana tomentosiformis] ref|XP_009767070.1|
JMSF045D15Sequence779004997 (13)ref|XP_004234794.1|5e-122PREDICTED: protein LST8 homolog [Solanum lycopersicum]781004997 (13)ref|XP_009596754.1|1e-147PREDICTED: protein LST8 homolog [Nicotiana tomentosiformis] ref|XP_009767070.1|

Alignment

This contig is upended


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rJMSF003D24-                                  GGAGATTAATGAATCTAGAATCATCTCTTTTAAGTC
rJMSF015B23-                                          ATGAATCTAGAATCATCTCTTTTAAGTC
rJMSF010M09-                                          ATGAATCTAGAATCATCTCTTTTAAGTC
                      ____________________________________________________________
consensus                                     GGAGATTAATGAATCTAGAATCATCTCTTTTAAGTC
 
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rJMSF003D24-          GTGCTCGTACGACGAAATAAAACTCTAGAAATCAAGCAATGATCTGAAAACTAGTATAGA
rJMSF015B23-          GTGCTCGTACGACGAAATAAAACTCTAGAAATCAAGCAATGATCTGAAAACTAGTATAGA
rJMSF010M09-          GTGCTCGTACGACGAAATAAAACTCTAGAAATCAAGCAATGATCTGAAAACTAGTATAGA
                      ____________________________________________________________
consensus             GTGCTCGTACGACGAAATAAAACTCTAGAAATCAAGCAATGATCTGAAAACTAGTATAGA
 
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rJMSF003D24-          AAGTTGATGAGCATACTGCACAAGTACAAGTGTAAAACACCCCTCCAGGCTCCAGGTACC
rJMSF015B23-          AAGTTGATGAGCATACTGCACAAGTACAAGTGTAAAACACCCCTCCAGGCTCCAGGTACC
rJMSF010M09-          AAGTTGATGAGCATACTGCACAAGTACAAGTGTAAAACACCCCTCCAGGCTCCAGGTACC
                      ____________________________________________________________
consensus             AAGTTGATGAGCATACTGCACAAGTACAAGTGTAAAACACCCCTCCAGGCTCCAGGTACC
 
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rJMSF003D24-          TGTAAGATTAAAGAATACTTCCAAGAATCAAAGAGGGTTTAGTTCAGTCAGGCCCATTAT
rJMSF015B23-          TGTAAGATTAAAGAATACTTCCAAGAATCAAAGAGGGTTTAGTTCAGTCAGGCCCATTAT
rJMSF010M09-          TGTAAGATTAAAGAATACTTCCAAGAATCAAAGAGGGTTTAGTTCAGTCAGGCCCATTAT
                      ____________________________________________________________
consensus             TGTAAGATTAAAGAATACTTCCAAGAATCAAAGAGGGTTTAGTTCAGTCAGGCCCATTAT
 
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rJMSF003D24-          CTTGCTGGTTGACATGGACAAAATATTCTTTGCCAGTTTACCAAATCATCTGAAAACCAC
rJMSF015B23-          CTTGCTGGTTGACATGGACAAAATATTCTTTGCCAGTTTACCAAATCATCTGAAAACCAC
rJMSF010M09-          CTTGCTGGTTGACATGGACAAAATATTCTTTGCCAGTTTACCAAATCATCTGAAAACCAC
rJMSF008L02-                                                TACCAAATCATCTGAAAACCAC
                      ____________________________________________________________
consensus             CTTGCTGGTTGACATGGACAAAATATTCTTTGCCAGTTTACCAAATCATCTGAAAACCAC
 
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rJMSF003D24-          ATAATTGATGGATGAGCTAGCTAGCTAGAGGGTTCGGGCCCGTCATGGAGAGCGCAACAC
rJMSF015B23-          ATAATTGATGGATGAGCTAGCTAGCTAGAGGGTTCGGGCCCGTCATGGAGAGCGCAACAC
rJMSF010M09-          ATAATTGATGGATGAGCTAGCTAGCTAGAGGGTTCGGGCCCGTCATGGAGAGCGCAACAC
rJMSF008L02-          ATAATTGATGGATGAGCTAGCTAGCTAGAGGGTTCGGGCCCGTCATGGAGAGCGCAACAC
                      ____________________________________________________________
consensus             ATAATTGATGGATGAGCTAGCTAGCTAGAGGGTTCGGGCCCGTCATGGAGAGCGCAACAC
 
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rJMSF003D24-          ACAGCTGCCTTGTGATGTCCCTGGTATACTTTGATTTCTTTGCCACCAGACACGGACCAT
rJMSF015B23-          ACAGCTGCCTTGTGATGTCCCTGGTATACTTTGATTTCTTTGCCACCAGACACGGACCAT
rJMSF010M09-          ACAGCTGCCTTGTGATGTCCCTGGTATACTTTGATTTCTTTGCCACCAGACACGGACCAT
rJMSF008L02-          ACAGCTGCCTTGTGATGTCCCTGGTATACTTTGATTTCTTTGCCACCAGACACGGACCAT
rJMSF045D15-                                                          GACATGGACCAT
rJMSF017D14-                                                          GACATGGACCAT
                      ____________________________________________________________
consensus             ACAGCTGCCTTGTGATGTCCCTGGTATACTTTGATTTCTTTGCCACCAGACACGGACCAT
 
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rJMSF003D24-          AATCTCGCTGTTGTGTCGGAAGAAGCTGTGATTAGAAAAGCACCATCGACAGAGAAAACA
rJMSF015B23-          AATCTCGCTGTTGTGTCGGAAGAAGCTGTGATTAGAAAAGCACCATCGACAGAGAAAACA
rJMSF010M09-          AATCTCGCTGTTGTGTCGGAAGAAGCTGTGATTAGAAAAGCACCATCGACAGAGAAAACA
rJMSF008L02-          AATCTCGCTGTTGTGTCGGAAGAAGCTGTGATTAGAAAAGCACCATCGACAGAGAAAACA
rJMSF045D15-          AATCTCGCCGTTGTGTCAGAAGAAGCTGTGATTAGAAAAGCACCATCCACGGAGAAAACA
rJMSF017D14-          AATCTCGCCGTTGTGTCAGAAGAAGCTGTGATTAGAAAAGCACCATCCACGGAGAAAACA
                      ____________________________________________________________
consensus             AATCTCGCTGTTGTGTCGGAAGAAGCTGTGATTAGAAAAGCACCATCGACAGAGAAAACA
 
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rJMSF003D24-          CAGTCCCAGACCCAGCGTTCATGTCCTATGAGAGTTTTCTCCAAGGTAAATCCATCCACA
rJMSF015B23-          CAGTCCCAGACCCAGCGTTCATGTCCTATGAGAGTTTTCTCCAAGGTAAATCCATCCACA
rJMSF010M09-          CAGTCCCAGACCCAGCGTTCATGTCCTATGAGAGTTTTCTCCAAGGTAAATCCATCCACA
rJMSF008L02-          CAGTCCCAGACCCAGCGTTCATGTCCTATGAGAGTTTTCTCCAAGGTAAATCCATCCACA
rJMSF045D15-          CAGTCCCAAACCCACCGCTCATGTCCTTTGAGAGTTTTCTCCAAGGTAAATCCATCCACG
rJMSF017D14-          CAGTCCCAAACCCACCGCTCATGTCCTTTGAGAGTTTTCTCCAAGGTAAATCCATCCACG
                      ____________________________________________________________
consensus             CAGTCCCAGACCCAGCGTTCATGTCCTATGAGAGTTTTCTCCAAGGTAAATCCATCCACA
 
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rJMSF003D24-          TTCCATATCTTGACAGTATGATCAGAAGATGCTGTGGCCAGATACC              
rJMSF015B23-          TTCCATATCTTGACAGTATGATCAGAAGATGCTGTGGCCAGATACC              
rJMSF010M09-          TTCCATATCTTGACAGTATGATCAGAAGATGCTGTGGCCAGATACCGGTGAGGCTCACTC
rJMSF008L02-          TTCCATATCTTGACAGTATGATCAGAAGATGCTGTGGCCAGATACCGGTGAGGCTCACTC
rJMSF045D15-          TTCCATATTTTGACAGTACGATCAGAAGATGCTGTTGCCAGATACCGATGAGGCTCACAC
rJMSF017D14-          TTCCATATTTTGACAGTACGATCAGAAGATGCTGTTGCCAGATACCGATGAGGCTCACAC
                      ____________________________________________________________
consensus             TTCCATATCTTGACAGTATGATCAGAAGATGCTGTGGCCAGATACCGGTGAGGCTCACTC
 
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rJMSF010M09-          AACTCCGGGGAAAGGAGACATTTGAGGATGTATCCATCATGTGCTTGTAATTTATGAAGG
rJMSF008L02-          AACTCCGGGGAAAGGAGACATTTGAGGATGTATCCATCATGTGCTTGTAATTTATGAAGG
rJMSF045D15-          AACTCGGGGGAAAGGAGACATTTGAGAATGTATCCATCATGTGCTGGTAACTTATGCAGT
rJMSF017D14-          AACTCGGGGGAAAGGAGACATTTGAGAATGTATCCATCATGTGCTGGTAACTTATGCAGT
                      ____________________________________________________________
consensus             AACTCGGGGGAAAGGAGACATTTGAGGATGTATCCATCATGTGCTTGTAATTTATGCAGT
 
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rJMSF010M09-          GGCTCAAAGTTGGTCATAGTCTGGGTTCCCTGCAATAGACGCCAAACATAACATGTTCCA
rJMSF008L02-          GGCTCAAAGTTGGTCATAGTCTGGGTTCCCTGCAATAGACGCCAAACATAACATGTTCCA
rJMSF045D15-          GGCTCAAAGTTGGTCATAGTCTGGGTTCCACGCAATAAGCGCCAAACATAACATATTCCA
rJMSF017D14-          GGCTCAAAGTTGGTCATAGTCTGGGTTCCACGCAATAAGCGCCAAACATAACATATTCCA
                      ____________________________________________________________
consensus             GGCTCAAAGTTGGTCATAGTCTGGGTTCCCTGCAATAGGCGCCAAACATAACATGTTCCA
 
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rJMSF010M09-          TGATTATTTGCAGCCNCAACCAAGCTTCCATCCCACATTACAGTCAAAGACCTGACTGCG
rJMSF008L02-          TGATTATTTGCAGCCACAACCAAGCTTCCATCCCACATTACAGTCAAAGACCTGACTGCG
rJMSF045D15-          TTATTATTTGCAGCCACAACCAAGCTTCCATCCCACATTACAGTCAGAGACCTAACAGCA
rJMSF017D14-          TTATTATTTGCAGCCACAACCAAGCTTCCATCCCACATTACAGTCAGAGACCTAACAGCA
JMSF045D15+                 TTTGCAGCCACAACCAAGCTTCCATCCCACATTACAGTCAGAGACCTAACAGCA
                      ____________________________________________________________
consensus             TTATTATTTGCAGCCACAACCAAGCTTCCATCCCACATTACAGTCAGAGACCTAACAGCA
 
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rJMSF010M09-          GTATCCAC                                                    
rJMSF008L02-          GTATCCACCTCTGGAACCANTTCACAGCTGCATG                          
rJMSF045D15-          GTATCCACCTCAGGAACCAACTCGCAGCTGCATGCATTTGCTTTCAAGTCCCATACTCGA
rJMSF017D14-          GTATCCACCTCAGGAACCAACTCGCAGCTGCATGCATTTGCTTTCAAGTCCCATACTCGA
JMSF045D15+           GTATCCACCTCAGGAACCAACTCGCAGCTGCATGCATTTGCTTTCAAGTCCCATACTCGA
                      ____________________________________________________________
consensus             GTATCCACCTCAGGAACCAACTCGCAGCTGCATGCATTTGCTTTCAAGTCCCATACTCGA
 
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rJMSF045D15-          ATATTTCCATTCTGATCACCAGATATAAGCTCAGTCTGGTTTGGATGCAAAACAACTGTG
rJMSF017D14-          ATATTTCCATTCTGATCACCAGATATAAGCTCAGTCTGGTTTGGATGCAAAACAACTGTG
JMSF045D15+           ATATTTCCATTCTGATCACCAGATATAAGCTCAGTCTGGTTTGGATGCAAAACAACTGTG
                      ____________________________________________________________
consensus             ATATTTCCATTCTGATCACCAGATATAAGCTCAGTCTGGTTTGGATGCAAAACAACTGTG
 
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rJMSF045D15-          TTGACAGCTGCACGGCTCTCATATTCTCTCTGAAACCCCGGTGCCCTCAAATCCCAAATC
rJMSF017D14-          TTGACAGCTGCACGGCTCTCATATTCTCTCTGAAACCCCGGTGCCCTCAAATCCCAAATC
JMSF045D15+           TTGACAGCTGCACGGCTCTCATATTCTCTCTGAAACCCCGGTGCCCTCAAATCCCAAATC
                      ____________________________________________________________
consensus             TTGACAGCTGCACGGCTCTCATATTCTCTCTGAAACCCCGGTGCCCTCAAATCCCAAATC
 
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rJMSF045D15-          TTTACTGTGCCATCTTCA                                          
rJMSF017D14-          TTTACTGTGCCATCTTCA                                          
JMSF045D15+           TTTACTGTGCCATCTTCAGAACCAGAATACATCCAATTTCCATCACATTGAAATCCTACT
                      ____________________________________________________________
consensus             TTTACTGTGCCATCTTCAGAACCAGAATACATCCAATTTCCATCACATTGAAATCCTACT
 
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JMSF045D15+           GCCATAACATTGTTAGTGTGTGAATCAAAGCTTTGTATAGGCTGAGGGCTGTTAGAATTG
                      ____________________________________________________________
consensus             GCCATAACATTGTTAGTGTGTGAATCAAAGCTTTGTATAGGCTGAGGGCTGTTAGAATTG
 
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JMSF017D14+                        GGATGTGAGGGTTGCCTGCTGCAGCCAGGTAAAGTTTATCTGGCGTA
JMSF045D15+           ATGTCGAACAATCGGATGTGAGGGTTGCCTGCTGCAGCCAGGTAAAGTTTATCTGGCGTA
JMSF008K02+                                                                      A
JMSF008L02+                                                                      A
                      ____________________________________________________________
consensus             ATGTCGAACAATCGGATGTGAGGGTTGCCTGCTGCAGCCAGGTAAAGTTTATCTGGCGTA
 
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JMSF017D14+           ATCTCAAGCCGATTGACTTGTGATTCTGGGTATTGGATAGTCCGGTAACAGCGGGCACTT
JMSF045D15+           ATCTCAAGCCGATTGACTTGTGATTCTGGGTATTGGATAGTCCGGTAACAGCGGGCACTT
JMSF003D24+               CAAGCCGGTTGACTTGTGATTCAGGGTATTGGATAGTCCGAAAACAGCGGGCACTC
JMSF008K02+           ATCTCAAGCCGGTTGACTTGTGATTCAGGGTATTGGATAGTCCGAAAACAGCGGGCACTC
JMSF008L02+           ATCTCAAGCCGGTTGACTTGTGATTCAGGGTATTGGATAGTCCGAAAACAGCGGGCACTC
                      ____________________________________________________________
consensus             ATCTCAAGCCGGTTGACTTGTGATTCAGGGTATTGGATAGTCCGAAAACAGCGGGCACTC
 
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JMSF017D14+           TTTGCCTCCCAGAACCGAATAGTGTGATCATAGCTAGCTGTAGCTAGCACAACTGATGGC
JMSF045D15+           TTTGCCTCCCAGAACCGAATAGTGTGATCATAGCTAGCTGTAGCTAGCACAACTGATGGC
JMSF003D24+           TTCGCTTCCCAAAACCGAATAGTGTGATCATAGCTAGCTGTTGCAAGCACAACCGATGGT
JMSF008K02+           TTCGCTTCCCAAAACCGAATAGTGTGATCATAGCTAGCTGTTGCAAGCACAACCGATGGT
JMSF008L02+           TTCGCTTCCCAAAACCGAATAGTGTGATCATAGCTAGCTGTTGCAAGCACAACCGATGGT
                      ____________________________________________________________
consensus             TTCGCTTCCCAAAACCGAATAGTGTGATCATAGCTAGCTGTTGCAAGCACAACCGATGGT
 
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JMSF017D14+           TGTG                                                        
JMSF045D15+           TGTG                                                        
JMSF003D24+           TGTGTCATCTTCGATCCTTTTCTCCTATTTGTTAGTCTTAGACAGCTGCGTGGTTGTGAT
JMSF008K02+           TGTG                                                        
JMSF008L02+           TGTGTCATCTTCGATCCTTTTCTCCTATTTGTTAGTCTTAGACAGCTGCGTGGTTGTGAT
JMSF015B23+                                                           CGTGGTTGTGAT
JMSF010M09+                 ATCTTCGATCCTTTTCTCCTATTTGTTAGTCTTAGACAGCTGCGTGGTTGTGAT
                      ____________________________________________________________
consensus             TGTGTCATCTTCGATCCTTTTCTCCTATTTGTTAGTCTTAGACAGCTGCGTGGTTGTGAT
 
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JMSF003D24+           CATTTAGTGGCGAAGGTGGGTACTAGGGTTTTGTTTTATGGGATTTTTGTACGAGATGCA
JMSF008L02+           CATTTAGTGGCGAAGGTGGGTACTAGGGTTTTGTTTTATGGGATTTTTGTACGAGATG-A
JMSF015B23+           CATTTAGTGGCGAAGGTGGGTACTAGGGTTTTGTTTTATGGGATTTTTGTACGAGATGCA
JMSF010M09+           CATTTAGTGGCGAAGGTGGGTACTAGGGTTTTGTTTTATGGGATTTTTGTACGAGATGCA
                      ____________________________________________________________
consensus             CATTTAGTGGCGAAGGTGGGTACTAGGGTTTTGTTTTATGGGATTTTTGTACGAGATGCA
 
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JMSF003D24+           GAGTGATGCCGGAGGAGCGGATATATCCCATAGCAGGGAAGAAGAGAAAAGCTTAAGACT
JMSF008L02+           GAGTGATGCCGGAGGAGCGGATATATCCCATAGCAGGGAAGAAGAGAAAAGCTTAAGACT
JMSF015B23+           GAGTGATGCCGGAGGAGCGGATATATCCCATAGCAGGGAAGAAGAGAAAAGCTTAAGACT
JMSF010M09+           GAGTGATGCCGGAGGAGCGGATATATCCCATAGCAGGGAAGAAGAGAAAAGCTTAAGACT
                      ____________________________________________________________
consensus             GAGTGATGCCGGAGGAGCGGATATATCCCATAGCAGGGAAGAAGAGAAAAGCTTAAGACT
 
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JMSF003D24+           TGTGAACAATGCTTCAATTGCAGAGATATAGACGGCAAAACGAGGTGGTTATGGAGGTGT
JMSF008L02+           TGTGAACAATGCTTCAATTGCAGAGATATAGACGGCAAAACGAGGTGGTTATGGAGGTGT
JMSF015B23+           TGTGAACAATGCTTCAATTGCAGAGATATAGACGGCAAAACGAGGTGGTTATGGAGGTGT
JMSF010M09+           TGTGAACAATGCTTCAATTGCAGAGATATAGACGGCAAAACGAGGTGGTTATGGAGGTGT
                      ____________________________________________________________
consensus             TGTGAACAATGCTTCAATTGCAGAGATATAGACGGCAAAACGAGGTGGTTATGGAGGTGT
 
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JMSF003D24+           AGCGCCGCTTGGAAGGATCGGGGCGGGCGGAGGAGAGACCTCTTTGCTGAATTGCTGCTC
JMSF008L02+           AGCGCCGCTTGGAAGGATCGGGGCGGGCGGAGGAGAGACCTCTTTGCTGAATTGCTGCTC
JMSF015B23+           AGCGCCGCTTGGAAGGATCGGGGCGGGCGGAGGAGAGACCTCTTTGCTGAATTGCTGCTC
JMSF010M09+           AGCGCCGCTTGGAAGGATCGGGGCGGGCGGAGGAGAGACCTCTTTGCTGAATTGCTGCTC
                      ____________________________________________________________
consensus             AGCGCCGCTTGGAAGGATCGGGGCGGGCGGAGGAGAGACCTCTTTGCTGAATTGCTGCTC