Contig 004996:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS006D05Sequence584004996 (5)ref|XP_009622441.1|3e-49PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A-like [Nicot
JMFS048B03Sequence604004996 (5)ref|XP_009622441.1|4e-50PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A-like [Nicot
JMFS074G09Sequence625004996 (5)ref|XP_009622441.1|2e-51PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A-like [Nicot
JMFS116C05Sequence567004996 (5)ref|XP_009622441.1|2e-42PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A-like [Nicot
JMSF010L17Sequence292004996 (5)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS006D05+                                           CATCCAAGTAGTCTGTACTTCAAGCTCT
JMFS048B03+                            CCAATATCATCATCACATCCAAGTAGTCTGTACTTCAAGCTCT
JMFS074G09+                        AGAACCAATATCATCATCACATCCAAGTAGTCTGTACTTCAAGCTCT
                      ____________________________________________________________
consensus                          AGAACCAATATCATCATCACATCCAAGTAGTCTGTACTTCAAGCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS006D05+           CCCTTTCTCCTTCAACAGACATTGTCAATGCCAAAACAGAAAGTATATATGCTAGTAGTT
JMFS048B03+           CCCTTTCTCCTTCAACAGACATTGTCAATGCCAAAACAGAAAGTATATATGCTAGTAGTT
JMFS116C05+              TTTCTCCTTCAACAGACATTGTCAATGCCAAAACAGAAAGTATATATGCTAGTAGTT
JMFS074G09+           CCCTTTCTCCTTCAACAGACATTGTCAATGCCAAAACAGAAAGTATATATGCTAGTAGTT
                      ____________________________________________________________
consensus             CCCTTTCTCCTTCAACAGACATTGTCAATGCCAAAACAGAAAGTATATATGCTAGTAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS006D05+           TCTTGGTATCTGAATCTGGCATTTTCTCATAATGCAACTTTAGTGTTCCATAATGAGGAC
JMFS048B03+           TCTTGGTATCTGAATCTGGCATTTTCTCATAATGCAACTTTAGTGTTCCATAATGAGGAC
JMFS116C05+           TCTTGGTATCTGAATCTGGCATTTTCTCATAATGCAACTTTAGTGTTCCATAATGAGGAC
JMFS074G09+           TCTTGGTATCTGAATCTGGCATTTTCTCATAATGCAACTTTAGTGTTCCATAATGAGGAC
                      ____________________________________________________________
consensus             TCTTGGTATCTGAATCTGGCATTTTCTCATAATGCAACTTTAGTGTTCCATAATGAGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS006D05+           GCAAGAACTTTAATGGCTTAGGAACTGATGTCATAGAGCTTGTTGCTGACCGAATTTCCT
JMFS048B03+           GCAAGAACTTTAATGGCTTAGGAACTGATGTCATAGAGCTTGTTGCTGACCGAATTTCCT
JMFS116C05+           GCAAGAACTTTAATGGCTTAGGAACTGATGTCATAGAGCTTGTTGCTGACCGAATTTCCT
JMFS074G09+           GCAAGAACTTTAATGGCTTAGGAACTGATGTCATAGAGCTTGTTGCTGACCGAATTTCCT
                      ____________________________________________________________
consensus             GCAAGAACTTTAATGGCTTAGGAACTGATGTCATAGAGCTTGTTGCTGACCGAATTTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS006D05+           GCCTCATGCTCTCTAGGGCAGCCATCTGCAGCCCAGTCTCAGGGTCCTGAACTCGCTCTA
JMFS048B03+           GCCTCATGCTCTCTAGGGCAGCCATCTGCAGCCCAGTCTCAGGGTCCTGAACTCGCTCTA
JMFS116C05+           GCCTCATGCTCTCTAGGGCAGCCATCTGCAGCCCAGTCTCAGGGTCCTGAACTCGCTCTA
JMFS074G09+           GCCTCATGCTCTCTAGGGCAGCCATCTGCAGCCCAGTCTCAGGGTCCTGAACTCGCTCTA
                      ____________________________________________________________
consensus             GCCTCATGCTCTCTAGGGCAGCCATCTGCAGCCCAGTCTCAGGGTCCTGAACTCGCTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS006D05+           CGTACAACTCCAACTGTTGTTTGAGTGCTAGATCCTCCTCGGAGAGATCTTCATCTTTCT
JMFS048B03+           CGTACAACTCCAACTGTTGTTTGAGTGCTAGATCCTCCTCGGAGAGATCTTCATCTTTCT
JMFS116C05+           CGTACAACTCCAACTGTTGTTTGAGTGCTAGATCCTCCTCGGAGAGATCTTCATCTTTCT
JMFS074G09+           CGTACAACTCCAACTGTTGTTTGAGTGCTAGATCCTCCTCGGAGAGATCTTCATCTTTCT
                      ____________________________________________________________
consensus             CGTACAACTCCAACTGTTGTTTGAGTGCTAGATCCTCCTCGGAGAGATCTTCATCTTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS006D05+           TGTCGTCCTTCTTCTTAGGGTCCTTGGCAGGGACTTTGACAGAGGCCTCCTCTCTAGCTG
JMFS048B03+           TGTCGTCCTTCTTCTTAGGGTCCTTGGCAGGGACTTTGACAGAGGCCTCCTCTCTAGCTG
JMFS116C05+           TGTCGTCCTTCTTCTTAGGGTCCTTGGCAGGGACTTTGACAGAGGCCTCCTCTCTAGCTG
JMFS074G09+           TGTCGTCCTTCTTCTTAGGGTCCTTGGCAGGGACTTTGACAGAGGCCTCCTCTCTAGCTG
JMSF010L17+                  CTTCTTCTTAGGGTCCTTGGCAGGGACTTTGACAGAGGCCTCCTCTCTAGCTG
                      ____________________________________________________________
consensus             TGTCGTCCTTCTTCTTAGGGTCCTTGGCAGGGACTTTGACAGAGGCCTCCTCTCTAGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS006D05+           GTTTATCACCTCCGGCGGCCCCGGCACTGTTTGGATCCGGCGTCATCGCTACTGAGATAA
JMFS048B03+           GTTTATCACCTCCGGCGGCCCCGGCACTGTTTGGATCCGGCGTCATCGCTACTGAGATAA
JMFS116C05+           GTTTATCACCTCCGGCGGCCCCGGCACTGTTTGGATCCGGCGTCATCGCTACTGAGATAA
JMFS074G09+           GTTTATCACCTCCGGCGGCCCCGGCACTGTTTGGATCCGGCGTCATCGCTACTGAGATAA
JMSF010L17+           GTTTATCACCTCCGGCGGCCCCGGCACTGTTTGGATCCGGCGTCATCGCTACTGAGATAA
                      ____________________________________________________________
consensus             GTTTATCACCTCCGGCGGCCCCGGCACTGTTTGGATCCGGCGTCATCGCTACTGAGATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS006D05+           CTAAACCCTA-GCGACAGACAGAAGTCTCCGGTAAAAGGAAATTCAATAGCTTGGTGTTT
JMFS048B03+           CTAAACCTCATGCGACAGACAGAAGTCTCCGGTAAAAGGAAATTCAATAGCTTGGTGTTT
JMFS116C05+           CTAAACCCTA-GCGACAGACAGAAGTCTCCGGTAAAAGGAAATTCAATAGCTTGGTGTTT
JMFS074G09+           CTAAACCCTA-GCGACAGACAGAAGTCTCCGGTAAAAGGAAATTCAATAGCTTGGTGTTT
JMSF010L17+           CTAAACCCTA-GCGACAGACAGAAGTCTCCGGTAAAAGGAAATTCAATAGCTTGGTGTTT
                      ____________________________________________________________
consensus             CTAAACCCTA-GCGACAGACAGAAGTCTCCGGTAAAAGGAAATTCAATAGCTTGGTGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS006D05+           CGAGCTGCGAATAGTTACGATCAATTTCGATTCATAAGTATCAAGCCCTAATTATAAACA
JMFS048B03+           CGAGCTGCGAATAGNTACGATCAATTTCGATTCATAAGTATCAAGCCCTAATTATAAACA
JMFS116C05+           CGAGCTGCGAATAGTTACGATCAATTTCGATTCATAAGTATCAAGCCCTAATTATAAACA
JMFS074G09+           CGAGCTGCGAATAGTTACGATCAATTTCGATTCATAAGTATCAAGCCCTAATTATAAACA
JMSF010L17+           CGAGCTGCGAATAGTTACGATCAATTTCGATTCATAAGTATCAAGCCCTAATTATAAACA
                      ____________________________________________________________
consensus             CGAGCTGCGAATAGTTACGATCAATTTCGATTCATAAGTATCAAGCCCTAATTATAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS006D05+           GAGTTACAAGCTTTTCG                                           
JMFS048B03+           GAGTTACAAGCTTTTC                                            
JMFS116C05+           GAGTTACAAGCTTTTCGTTCTCACCAAGCAA                             
JMFS074G09+           GAGTTACAAGCTTTTCGTTCTCACCAAGCAAGGTTTTCT                     
JMSF010L17+           GAGTTACAAGCTTTTCGTTCTCACCAAGCAAGGTTTTCTTCGCCTTTCTCTGCTTCGCTG
                      ____________________________________________________________
consensus             GAGTTACAAGCTTTTCGTTCTCACCAAGCAAGGTTTTCTTCGCCTTTCTCTGCTTCGCTG