Contig 004990:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN015P14Sequence590004990 (10)
JMFN030H01Sequence618004990 (10)
JMFN040H01Sequence577004990 (10)
JMFN045F03Sequence523004990 (10)
JMFS034B02Sequence416004990 (10)
JMFS166B09Sequence600004990 (10)
JMSF009J05Sequence559004990 (10)
JMSF009K05Sequence418004990 (10)551004990 (10)
JMSF020O13Sequence534004990 (10)719023514

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN030H01+                                    AAACGAAATAAATAAATAAATAAACCCAATAGTTA
                      ____________________________________________________________
consensus                                      AAACGAAATAAATAAATAAATAAACCCAATAGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN040H01+                                ATTACAATATTACATCACAACCCAAAAGGGTAAACAACA
JMFN030H01+           CAACAAAACAATAATTACAAAATTACAATATTACATCACAACCCAAAAGGGTAAACAACA
rJMSF009K05-                                                         AGGGTAAACAACA
                      ____________________________________________________________
consensus             CAACAAAACAATAATTACAAAATTACAATATTACATCACAACCCAAAAGGGTAAACAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN040H01+           TTGATAACATTAAATCATTTTACTAAGTTAATTACAATTACCAAAAAACAAAAATTAAAT
JMFN030H01+           TTGATAACATTAAATCATTTTACTAAGTTAATTACAATTACCAAAAAACAAAAATTAAAT
rJMSF009J05-            GATAACATTAAATCATTTTACTAAGTTAATTACAATTACCAAAAAACAAAAATTAAAT
rJMSF009K05-          TTGATAACATTAAATCATTTTACTAAGTTAATTACAATTACCAAAAAACAAAAATTAAAT
                      ____________________________________________________________
consensus             TTGATAACATTAAATCATTTTACTAAGTTAATTACAATTACCAAAAAACAAAAATTAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN040H01+           AAAGGTGAGTGAAATAAAATTGGGAGGAAATGCCAAGTGATTTAGTTTGATCCCCCTTTT
JMFN030H01+           AAAGGTGAGTGAAATAAAATTGGGAGGAAATGCCAAGTGATTTAGTTTGATCCCCCTTTT
rJMSF009J05-          AAAGGTGAGTGAAATAAAATTGGGAGGAAATGCCAAGTGATTTAGTTTGATCCCCCTTTT
rJMSF009K05-          AAAGGTGAGTGAAATAAAATTGGGAGGAAATGCCAAGTGATTTAGTTTGATCCCCCTTTT
                      ____________________________________________________________
consensus             AAAGGTGAGTGAAATAAAATTGGGAGGAAATGCCAAGTGATTTAGTTTGATCCCCCTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN040H01+           GAACAAGCAAATTGATCCAATGATCCTTCATTTGTCTTGTAATTAGGACCCATTAAATTT
JMFN030H01+           GAACAAGCAAATTGATCCAATGATCCTTCATTTGTCTTGTAATTAGGACCCATTAAATTT
rJMSF009J05-          GAACAAGCAAATTGATCCAATGATCCTTCATTTGTCTTGTAATTAGGACCCATTAAATTT
JMSF020O13+                                                          ACCCATTAAATTT
rJMSF009K05-          GAACAAGCAAATTGATCCAATGATCCTTCATTTGTCTTGTAATTAGGACCCATTAAATTT
JMFS166B09+                                                          ACCCATTAAATTT
JMFN015P14+                                                          ACCCATTAAATTT
JMSF009K05+              CAAGCAAATTGATCCAATGATCCTTCATTTGTCTTGTAATTAGGACCCATTAAATTT
                      ____________________________________________________________
consensus             GAACAAGCAAATTGATCCAATGATCCTTCATTTGTCTTGTAATTAGGACCCATTAAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN040H01+           TCTAAGCTGGAGGATTTGACGATTTGACGAGCCATTGAGTAGCATACCGGCGGACAACGG
JMFN030H01+           TCTAAGCTGGAGGATTTGACGATTTGACGAGCCATTGAGTAGCATACCGGCGGACAACGG
rJMSF009J05-          TCTAAGCTGGAGGATTTGACGATTTGACGAGCCATTGAGTAGCATACCGGCGGACAACGG
JMFS034B02+                                                 GTAGCATACCGGCGGACTACGG
JMSF020O13+           TCTAAGCTGGAGGATTTGACGATTTGACGAGCCATTGAGTAGCATACCGGCGGACAACGG
JMFN045F03+                                                        ACCGGCGGACAACGG
rJMSF009K05-          TCTAAGCTGGAGGATTTGACGATTTGACGAGCCATTGAGTAGCATACCGGCGGACAACGG
JMFS166B09+           TCTAAGCTGGAGGATTTGACGATTTGACGAGCCATTGAGTAGCATACCGGCGGACAACGG
JMFN015P14+           TCTAAGCTGGAGGATTTGACGATTTGACGAGCCATTGAGTAGCATACCGGCGGACAACGG
JMSF009K05+           TCTAAGCTGGAGGATTTGACGATTTGACGAGCCATTGAGTAGCATACCGGCGGACAACGG
                      ____________________________________________________________
consensus             TCTAAGCTGGAGGATTTGACGATTTGACGAGCCATTGAGTAGCATACCGGCGGACAACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN040H01+           TCACAAGTCGAAGCCTTGGAAGAGATCTAGGGTTTCCAGGTTGAGCAACGATTTGACGAA
JMFN030H01+           TCACAAGTCGAAGCCTTGGAAGAGATCTAGGGTTTCCAGGTTGAGCAACGATTTGACGAA
rJMSF009J05-          TCACAAGTCGAAGCCTTGGAAGAGATCTAGGGTTTCCAGGTTGAGCAACGATTTGACGAA
JMFS034B02+           TCGCAAGTGGAAGCC-TGGAAGAGATCTAGGGTTTCCAGGTTGAGCAACGATTTGACGAA
JMSF020O13+           TCACAAGTCGAAGCCTTGGAAGAGATCTAGGGTTTCCAGGTTGAGCAACGATTTGACGAA
JMFN045F03+           TCACAAGTCGAAGCCTTGGAAGAGATCTAGGGTTTCCAGGTTGAGCAACGATTTGACGAA
rJMSF009K05-          TCACAAGTCGAAGCCTTGGAAGAGATCTAGGGTTTCCAGGTTGAGCAACGATTTGACGAA
JMFS166B09+           TCACAAGTCGAAGCCTTGGAAGAGATCTAGGGTTTCCAGGTTGAGCAACGATTTGACGAA
JMFN015P14+           TCACAAGTCGAAGCCTTGGAAGAGATCTAGGGTTTCCAGGTTGAGCAACGATTTGACGAA
JMSF009K05+           TCACAAGTCGAAGCCTTGGAAGAGATCTAGGGTTTCCAGGTTGAGCAACGATTTGACGAA
                      ____________________________________________________________
consensus             TCACAAGTCGAAGCCTTGGAAGAGATCTAGGGTTTCCAGGTTGAGCAACGATTTGACGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN040H01+           GGTGTAGGAGAGACTCGAGAGACGAGATGACAGAGCCGGAGAAGAAGTCACGGAGAGGTT
JMFN030H01+           GGTGTAGGAGAGACTCGAGAGACGAGATGACAGAGCCGGAGAAGAAGTCACGGAGAGGTT
rJMSF009J05-          GGTGTAGGAGAGACTCGAGAGACGAGATGACAGAGCCGGAGAAGAAGTCACGGAGAGGTT
JMFS034B02+           GGTGTAGGAGAGACTCGAGAGACGAGATGACAGAGCCGGAGAAGAAGTCTCGGAGAGGTT
JMSF020O13+           GGTGTAGGAGAGACTCGAGAGACGAGATGACAGAGCCGGAGAAGAAGTCACGGAGAGGTT
JMFN045F03+           GGTGTAGGAGAGACTCGAGAGACGAGATGACAGAGCCGGAGAAGAAGTCACGGAGAGGTT
rJMSF009K05-          GGTGTAGGAGAGACTCGAGAGACGAGATGACAGAGCCGGAGAAGAAGTCACGGAGAGGTT
JMFS166B09+           GGTGTAGGAGAGACTCGAGAGACGAGATGACAGAGCCGGAGAAGAAGTCACGGAGAGGTT
JMFN015P14+           GGTGTAGGAGAGACTCGAGAGACGAGATGACAGAGCCGGAGAAGAAGTCACGGAGAGGTT
JMSF009K05+           GGTGTAGGAGAGACTCGAGAGACGAGATGACAGAGCCGGAGAAGAAGTCACGGAGAGGTT
                      ____________________________________________________________
consensus             GGTGTAGGAGAGACTCGAGAGACGAGATGACAGAGCCGGAGAAGAAGTCACGGAGAGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN040H01+           GGGAAACTGCGAGAAGAGTGAGAGGCAGAGCCGTAGAGAGGCGGAACGGAGGCGGGGTTG
JMFN030H01+           GGGAAACTGCGAGAAGAGTGAGAGGCAGAGCCGTAGAGAGGCGGAACGGAGGCGGGGTTG
rJMSF009J05-          GGGAAACTGCGAGAAGAGTGAGAGGCAGAGCCGTAGAGAGGCGGAACGGAGGCGGGGTTG
JMFS034B02+           GGGAAACTAGGAGAAGAGTGAGAGGCAGAGCCGTAGAGAGGCGGAACGGAGGCGGGGTTG
JMSF020O13+           GGGAAACTGCGAGAAGAGTGAGAGGCAGAGCCGTAGAGAGGCGGAACGGAGGCGGGGTTG
JMFN045F03+           GGGAAACTGCGAGAAGAGTGAGAGGCAGAGCCGTAGAGAGGCGGAACGGAGGCGGGGTTG
rJMSF009K05-          GGGAAACTGCGAGAAGAGTGAGAGGCAGAGCCGTAGAGAGGCGGAACGGAGGCGGGGTTG
JMFS166B09+           GGGAAACTGCGAGAAGAGTGAGAGGCAGAGCCGTAGAGAGGCGGAACGGAGGCGGGGTTG
JMFN015P14+           GGGAAACTGCGAGAAGAGTGAGAGGCAGAGCCGTAGAGAGGCGGAACGGAGGCGGGGTTG
JMSF009K05+           GGGAAACTGCGAGAAGAGTGAGAGGCAGAGCCGTAGAGAGGCGGAACGGAGGCGGGGTTG
                      ____________________________________________________________
consensus             GGGAAACTGCGAGAAGAGTGAGAGGCAGAGCCGTAGAGAGGCGGAACGGAGGCGGGGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN040H01+           AGTG-GTTGAGAGATGGAGAGATTTTGTGGGGTGAGAA-TGGTAGAAAAGCTCTGAGAGA
JMFN030H01+           AGTG-GTTGAGAGATGGAGAGATTTTGTGGGGTGAGAA-TGGTAGAAAAGCTCTGAGAGA
rJMSF009J05-          AGTG-GTTGAGAGATGGAGAGATTTTGTGGGGTGAGAA-TGGTAGAAAAGCTCTGAGAGA
JMFS034B02+           AGTGAGTTGAGAGATGGACAGATTTTGTGGGGTGAGAAGTGGTAGAAAAGCTCTGAGAGA
JMSF020O13+           AGTG-GTTGAGAGATGGAGAGATTTTGTGGGGTGAGAA-TGGTAGAAAAGCTCTGAGAGA
JMFN045F03+           AGTG-GTTGAGAGATGGAGAGATTTTGTGGGGTGAGAA-TGGTAGAAAAGCTCTGAGAGA
rJMSF009K05-          AGTG-GTTGAGAGATGGAGAGATTTTGTGGGGTGAGAA-TGGTAGAAAAGCTCTGAGAGA
JMFS166B09+           AGTG-GTTGAGAGATGGAGAGATTTTGTGGGGTGAGAA-TGGTAGAAAAGCTCTGAGAGA
JMFN015P14+           AGTG-GTTGAGAGATGGAGAGATTTTGTGGGGTGAGAA-TGGTAGAAAAGCTCTGAGAGA
JMSF009K05+           AGTG-GTTGAGAGATGGAGAGATTTTGTGGGGTGAGAA-TGGTAGAAAAGCTCTGAGAGA
                      ____________________________________________________________
consensus             AGTG-GTTGAGAGATGGAGAGATTTTGTGGGGTGAGAA-TGGTAGAAAAGCTCTGAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN040H01+           GAGAGTGAAAATTTGAGAGGGGTGAGCGGCGGAAACAA                      
JMFN030H01+           GAGAGTGAAAATTTGAGAGGGGTGAGCGGCGGAAACAATGAATGA               
rJMSF009J05-          GAGAGTGAAAATTTGAGAGGGGTGAGCGGCGGAAACAATGAATGAGAAAGATCTGA    
JMFS034B02+           G                                                           
JMSF020O13+           GAGAGTGAAAATTTGAGAGGGGTGAGCGGCGGAAACAATGAATGAGAAAGATCT      
JMFN045F03+           GAGAGTGAAAATTTGAGAGGGGTGAGCGGCGGAAACAATGAA                  
rJMSF009K05-          GAGAGTGAAAATTTGAGAGGGGTGAGCGGCGGAAACAATGAATGAGAAAGATCTGA    
JMFS166B09+           GAGAGTGAAAATTTGAGAGGGGTGAGCGGCGGAAACAATGAA                  
JMFN015P14+           GAGAGTGAAAATTTGAGAGGGGTGAGCGGCG                             
JMSF009K05+           GAGAGTGAAAATTTGAGAGGGGTGAGCGGCGGAAACAATGAATGAGAAAGATCTGATATC
                      ____________________________________________________________
consensus             GAGAGTGAAAATTTGAGAGGGGTGAGCGGCGGAAACAATGAATGAGAAAGATCTGATATC