Contig 004984:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016K17Sequence597004984 (6)emb|CDP18531.1|1e-84unnamed protein product [Coffea canephora]768004984 (6)ref|XP_010057240.1|5e-125PREDICTED: 40S ribosomal protein S2-4-like [Eucalyptus grandis] gb|KCW90198.1| h
JMSF004M05Sequence387015656ref|XP_009772597.1|9e-60PREDICTED: transcription factor TGA2-like isoform X3 [Nicotiana sylvestris]258004984 (6)ref|XP_011069984.1|5e-11PREDICTED: 40S ribosomal protein S2-4-like [Sesamum indicum]
JMSF004O07Sequence238004984 (6)gb|KEH40624.1|3e-1140S ribosomal protein S2-4 [Medicago truncatula]
JMSF008N07Sequence239004984 (6)gb|KEH40624.1|3e-1240S ribosomal protein S2-4 [Medicago truncatula]718004984 (6)ref|XP_010057240.1|3e-132PREDICTED: 40S ribosomal protein S2-4-like [Eucalyptus grandis] gb|KCW90198.1| h

Alignment

This contig is upended


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rJMSF004M05-                                                            CAAAAGATAA
                      ____________________________________________________________
consensus                                                               CAAAAGATAA
 
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rJMSF004M05-          GAGAACCGGAGTTTATATAAGGAGAAATAAATGGATCAAAATTCCTTAAAATCTNTTAAA
                      ____________________________________________________________
consensus             GAGAACCGGAGTTTATATAAGGAGAAATAAATGGATCAAAATTCCTTAAAATCTNTTAAA
 
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rJMSF004M05-          CAAANATTTCCTAGGTAGAAAAGTCCTAGCATAAAACCNTGCTTATGCATCAACCTTTTC
rJMFF016K17-                                                  GCTTATGCATCAACCTTTTC
rJMSF008N07-                                                  GCTTATGCATCAACCTTTTC
                      ____________________________________________________________
consensus             CAAANATTTCCTAGGTAGAAAAGTCCTAGCATAAAACCNTGCTTATGCATCAACCTTTTC
 
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rJMSF004M05-          AGCAACCTCCTCAATTTGGACAAACTTGGTGGTNGGCTTGGCTAAGATATCGGNATACNC
rJMFF016K17-          AGCAACCTCCTCAATTTGGACAAACTTGGTGGTTGGCTTGGCTAAGATATCGGTATACTC
rJMSF008N07-          AGCAACCTCCTCAATTTGGACAAACTTGGTGGTTGGCTTGGCTAAGATATCGGTATACTC
                      ____________________________________________________________
consensus             AGCAACCTCCTCAATTTGGACAAACTTGGTGGTTGGCTTGGCTAAGATATCGGTATACTC
 
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rJMSF004M05-          TTCGAATGGAGATTTTATGAAGCGAGTCTCCTTCCAAAAGTCNGGCGTAAGGNACCCATA
rJMFF016K17-          TTCGAATGGAGATTTTATGAAGCGAGTCTCCTTCCAAAAGTCTGGCGTAAGGAACCCATA
rJMSF008N07-          TTCGAATGGAGATTTTATGAAGCGAGTCTCCTTCCAAAAGTCTGGCGTAAGGAACCCATA
                      ____________________________________________________________
consensus             TTCGAATGGAGATTTTATGAAGCGAGTCTCCTTCCAAAAGTCTGGCGTAAGGAACCCATA
 
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rJMSF004M05-          TGTCTTCA                                                    
rJMFF016K17-          TGTCTTCATAAGACAATCAAACGTTGCCTTAACAAAGTTTCCAAGGGTTTTAGTAGAGCC
rJMSF008N07-          TGTCTTCATAAGACAATCAAACGTTGCCTTAACAAAGTTTCCAAGGGTTTTAGTAGAGCC
                      ____________________________________________________________
consensus             TGTCTTCATAAGACAATCAAACGTTGCCTTAACAAAGTTTCCAAGGGTTTTAGTAGAGCC
 
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rJMFF016K17-          ACGGGAAGAGGTGAAGACATCCTCAATACCAGCAAACTGGAGCACCTTCTTAGGAACCCT
rJMSF008N07-          ACGGGAAGAGGTGAAGACATCCTCAATACCAGCAAACTGGAGCACCTTCTTAGGAACCCT
                      ____________________________________________________________
consensus             ACGGGAAGAGGTGAAGACATCCTCAATACCAGCAAACTGGAGCACCTTCTTAGGAACCCT
 
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rJMFF016K17-          AGCAGCAACAATTCCAGCACCACGGGGAGCCGGGACCATCCGGACGGTAACTGAACCGCA
rJMSF008N07-          AGCAGCAACAATTCCAGCACCACGGGGAGCCGGGACCATCCGGACGGTAACTGAACCGCA
JMFF016K17+                  ACAATTCCAGCACCACGGGGAGCCGGGACCATCCGGACGGTAACTGAACCGCA
                      ____________________________________________________________
consensus             AGCAGCAACAATTCCAGCACCACGGGGAGCCGGGACCATCCGGACGGTAACTGAACCGCA
 
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rJMFF016K17-          CTTT-CCGGTGACCTTGCAAGGCACAGTGTGAGGCTTCCCAATCTTGTTCCCCCAGTAAC
rJMSF008N07-          CTTT-CCGGTGACCTTGCAAGGCACAGTGTGAGGCTTCCCAATCTTGTTCCCCCAGTAAC
JMFF016K17+           CTTTCCCGGTGACCTTGCAAGGCACAGTGTGAGGCTTCCCAATCTTGTTCCCCCAGTAAC
                      ____________________________________________________________
consensus             CTTT-CCGGTGACCTTGCAAGGCACAGTGTGAGGCTTCCCAATCTTGTTCCCCCAGTAAC
 
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rJMFF016K17-          CTCTCCTCACGGGAACCACAGACAGCTTAGCCAATATAATGGAGCCGCGAATGGCAGTGG
rJMSF008N07-          CTCTCCTCACGGGAACCACAGACAGCTTAGCCAATATAATGGAGCCGCGAATGGCAGTGG
JMFF016K17+           CTCTCCTCACGGGAACCACAGACAGCTTAGCCAATATAATGGAGCCGCGAATGGCAGTGG
                      ____________________________________________________________
consensus             CTCTCCTCACGGGAACCACAGACAGCTTAGCCAATATAATGGAGCCGCGAATGGCAGTGG
 
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rJMFF016K17-          CGACTTCCTTGGAGCACTTCACGCCGAGCCCGACATGGCCATTGCCGTCGCCGACGACCA
rJMSF008N07-          CGACTTCCTTGGAGCACTTCACGCCGAGCCCGACATGGCCATTGCCGTCGCCGACGACCA
JMFF016K17+           CGACTTCCTTGGAGCACTTCACGCCGAGCCCGACATGGCCATTGCCGTCGCCGACGACCA
                      ____________________________________________________________
consensus             CGACTTCCTTGGAGCACTTCACGCCGAGCCCGACATGGCCATTGCCGTCGCCGACGACCA
 
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rJMFF016K17-          CGAATGCCTTGAACCGGGTCCTCTGCCCTGCCCGAGTCTGTTTCTGGACAGGCATGATTT
rJMSF008N07-          CGAATGCCTTGGACCGGGTCCTCTGCCCTGCCAGAGTCTGTTTCTGGACAGGCATGATTT
JMFF016K17+           CGAATGCCTTGAACCGGGTCCTCTGCCCTGCCCGAGTCTGTTTCTGGACAGGCATGATTT
                      ____________________________________________________________
consensus             CGAATGCCTTGAACCGGGTCCTCTGCCCTGCCCGAGTCTGTTTCTGGACAGGCATGATTT
 
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rJMFF016K17-          TCATGACCTTATCCTTGAGAGATGGCCCGACAAG                          
rJMSF008N07-          TCATGACCTCATCCTTGAGAGATGGCCCGACAAGAGTATCGATGATTTGATACTCCTTGA
JMFF016K17+           TCATGACCTTATCCTTGAGAGATGGCCCGACAAGAGTATCGATGATTTGATACTCCTTGA
                      ____________________________________________________________
consensus             TCATGACCTTATCCTTGAGAGATGGCCCGACAAGAGTATCGATGATTTGATACTCCTTGA
 
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rJMSF008N07-          TGGGAAG                                                     
JMFF016K17+           TGGGAAGAGAGTGGAGGTAGATCTGCTCCAAAGATCGTATCTTGCCTTCCTTCACAAGAC
JMSF004O07+                      TGGAGGTAGATTTGCTCCAAAGATCGTATCTTGCCTTCCTTCACAAGAC
JMSF008N07+               AAGAGAGTGGAGGTAGATCTGCTCCAAAGATCGTATCTTGCCTTCCTTCACAAGAC
                      ____________________________________________________________
consensus             TGGGAAGAGAGTGGAGGTAGATCTGCTCCAAAGATCGTATCTTGCCTTCCTTCACAAGAC
 
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JMFF016K17+           GTCCCAGCTTGGTAACCGGAACCCACTTCTCCTCCTCGGTGTCACGGCGACCTCGGCGAC
JMSF004O07+           GTCCCAGCTTGGTAACCGGAACCCACTTCTCCTCCTCGGTGTCACGGCGACCTCGGCGAC
JMSF008N07+           GTCCCAGCTTGGTAACCGGAACCCACTTCTCCTCCTCGGTGTCACGGCGACCTCGGCGAC
                      ____________________________________________________________
consensus             GTCCCAGCTTGGTAACCGGAACCCACTTCTCCTCCTCGGTGTCACGGCGACCTCGGCGAC
 
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JMFF016K17+           CACCGCGGCCTCTTCCTCCACGGTCTCCGCCGCGCCCTCGTCCCCCAAAACCGCGCCCAA
JMSF004O07+           CACCGCGGCCTCTTCCTCCACGGTC                                   
JMSF008N07+           CACCGCGGCCTCTTCCTCCACGGTCTCCGCCGCGCCCTCGTCCCCCAAAACCGCGCCCAA
                      ____________________________________________________________
consensus             CACCGCGGCCTCTTCCTCCACGGTCTCCGCCGCGCCCTCGTCCCCCAAAACCGCGCCCAA
 
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JMFF016K17+           ATCCTCCTCTCTCAGCCATGCT                                      
JMSF008N07+           ATCCTCCTCTCTCAGCCATGCTTAGGGTTCGGGTTTTCGCGCAACTGCACAACTGAGCTC
                      ____________________________________________________________
consensus             ATCCTCCTCTCTCAGCCATGCTTAGGGTTCGGGTTTTCGCGCAACTGCACAACTGAGCTC