clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF048C04 | Sequence | 437 | 004981 (6) | 222 | 002819 (19) | ||||||
JMSF006J11 | Sequence | 361 | 004981 (6) | 555 | 011116 (2) | gb|ADG28675.2| | 2e-57 | gibberellin 20-oxidase 3 [Ipomoea nil] | |||
JMSF008J11 | Sequence | 327 | 004981 (6) | 778 | 005752 (3) | ref|XP_008243378.1| | 132 | PREDICTED: uncharacterized protein LOC103341609 [Prunus mume] | |||
JMSF034G14 | Sequence | 637 | 004981 (6) | emb|CDO98350.1| | 3e-25 | unnamed protein product [Coffea canephora] | 726 | 005752 (3) | ref|XP_008243378.1| | 132 | PREDICTED: uncharacterized protein LOC103341609 [Prunus mume] |
JMSF036H07 | Sequence | 700 | 004981 (6) | 751 | 005752 (3) | ref|XP_008243378.1| | 132 | PREDICTED: uncharacterized protein LOC103341609 [Prunus mume] | |||
JMSF037J05 | Sequence | 638 | 004981 (6) | emb|CDO98350.1| | 6e-26 | unnamed protein product [Coffea canephora] | 726 | 018286 | ref|XP_008243378.1| | 263 | PREDICTED: uncharacterized protein LOC103341609 [Prunus mume] |
This contig is upended
. : . : . : . : . : . :
JMSF036H07+ AACTGTTTTTAAATGAAAAACAAAATCATATATCATTCATCTATNGGCTATATAT
____________________________________________________________
consensus AACTGTTTTTAAATGAAAAACAAAATCATATATCATTCATCTATNGGCTATATAT
. : . : . : . : . : . :
JMSF036H07+ TACTATAACCATATTCTCACCATTATCTACTAACATATTTATTTATTTCCACATTCATTA
____________________________________________________________
consensus TACTATAACCATATTCTCACCATTATCTACTAACATATTTATTTATTTCCACATTCATTA
. : . : . : . : . : . :
JMSF036H07+ TCATATGTTTTTAATTTTTATTGAACTCAATAGATTTTTTTAATTACGTCACGTTTTAAG
____________________________________________________________
consensus TCATATGTTTTTAATTTTTATTGAACTCAATAGATTTTTTTAATTACGTCACGTTTTAAG
. : . : . : . : . : . :
JMSF036H07+ ATTTGATCGATCACATACCGTATACAACTGTGATAACATTCAGCAAGATTACACTCCTCA
JMSF037J05+ CGTATACAACTGTGATAACATTCAGCAAGATTACACTCCTCA
JMSF034G14+ CGTATACAACTGTGATAACATTCAGCAAGATTACACTCCTCA
____________________________________________________________
consensus ATTTGATCGATCACATACCGTATACAACTGTGATAACATTCAGCAAGATTACACTCCTCA
. : . : . : . : . : . :
JMSF036H07+ ACTTGTTTGATCTACACACAATTTTCCTCCAAAATGCTTTCTTTCTACCCAAAGATTTCT
JMSF037J05+ ACTTGTTTGATCTACACNCAATTTTCCTCCAAAATGCTTTCTTTCTACCCAAAGATTTCT
JMFF048C04+ TTCTTTCTACCCAAAGATTTCT
JMSF034G14+ ACTTGTTTGATCTACACACAATTTTCCTCCAAAATGCTTTCTTTCTACCCAAAGATTTCT
____________________________________________________________
consensus ACTTGTTTGATCTACACACAATTTTCCTCCAAAATGCTTTCTTTCTACCCAAAGATTTCT
. : . : . : . : . : . :
JMSF036H07+ TGGTCGCAACCCACACAGGATCTCTCCCCTTCGACCTCTCCCCTTCTTCACTGCAAAAAA
JMSF037J05+ TGGTCGCAACCCACACAGGATCTCTCCCCTTCGACCTCTCCCCTTCTTCACTGCAAAAAA
JMFF048C04+ TGGTCGCAACCCACACAGGATCTCTCCCCTTCGACCTCTCCCCTTCTTCACTGCAAAAAA
JMSF034G14+ TGGTCGCAACCCACACAGGATCTCTCCCCTTCGACCTCTCCCCTTCTTCACTGCAAAAAA
JMSF006J11+ CACTGCAAAAAA
____________________________________________________________
consensus TGGTCGCAACCCACACAGGATCTCTCCCCTTCGACCTCTCCCCTTCTTCACTGCAAAAAA
. : . : . : . : . : . :
JMSF036H07+ CTGGCCAATAA-TTCCCATGACAATTTACAGCTTTTCTCCAGGATCTCTCTTTCAATCCC
JMSF037J05+ CTGGCCAATAA-TTCCCATGACAATTTACAGCTTTTCTCCAGGATCTCTCTTTCAATCCC
JMFF048C04+ CTGGCCAATAA-TTCCCATGACAATTTACAGCTTTTCTCCAGGATCTCTCTTTCAATCCC
JMSF034G14+ CTGGCCAATAA-TTCCCATGACAATTTACAGCTTTTCTCCAGGATCTCTCTTTCAATCCC
JMSF006J11+ CTGGCCAATAATTTCCCATGACAATTTACAGCTTTTCTCCAGGATCTCTCTTTCAATCCC
JMSF008J11+ TTTCTCCAGGATCTCTCTTTCAATCCC
____________________________________________________________
consensus CTGGCCAATAA-TTCCCATGACAATTTACAGCTTTTCTCCAGGATCTCTCTTTCAATCCC
. : . : . : . : . : . :
JMSF036H07+ TCACCAAAAATAGCTGAACAGCAATTCACGGAAGAAGAAGAAGAAGAAGAAAAAGAATGA
JMSF037J05+ TCACCAAAAATAGCTGAACAGCAATTCACGGAAGAAGAAGAAGAAGAAGAAAAAGAATGA
JMFF048C04+ TCACCAAAAATAGCTGAACAGCAATTCACGGAAGAAGAAGAAGAAGAAGAAAAAGAATGA
JMSF034G14+ TCACCAAAAATAGCTGAACAGCAATTCACGGAAGAAGAAGAAGAAGAAGAAAAAGAATGA
JMSF006J11+ TCACCAAAAATAGCTGAACAGCAATTCACGGAAGAAGAAGAAGAAGAAGAAAAAGAATGA
JMSF008J11+ TCACCAAAAATAGCTGAACAGCAATTCACGGAAGAAGAAGAAGAAGAAGAAAAAGAATGA
____________________________________________________________
consensus TCACCAAAAATAGCTGAACAGCAATTCACGGAAGAAGAAGAAGAAGAAGAAAAAGAATGA
. : . : . : . : . : . :
JMSF036H07+ TCAGACAAGGAAACGACCGTGAGATGACTCTTTCGGAGTCCTCTAGGAATCAAGAAGCAA
JMSF037J05+ TCAGACAAGGAAACGACCGTGAGATGACTCTTTCGGAGTCCTCTAGGAATCAAGAAGCAA
JMFF048C04+ TCAGACAAGGAAACGACCGTGAGATGACTCTTTCGGAGTCCTCTAGGAATCAAGAATCAA
JMSF034G14+ TCAGACAAGGAAACGACCGTGAGATGACTCTTTCGGAGTCCTCTAGGAATCAAGAAGCAA
JMSF006J11+ TCAGACAAGGAAACGACCGTGAGATGACTCTTTCGGAGTCCTCTAGGAATCAAGAAGCAA
JMSF008J11+ TCAGACAAGGAAACGACCGTGAGATGACTCTTTCGGAGTCCTCTAGGAATCAAGAAGCAA
____________________________________________________________
consensus TCAGACAAGGAAACGACCGTGAGATGACTCTTTCGGAGTCCTCTAGGAATCAAGAAGCAA
. : . : . : . : . : . :
JMSF036H07+ GATACTGTTGCCACTGAAGCAGAATCTTTAGGAATCTTGCAAGTGGATAGATAGGACATG
JMSF037J05+ GATACTGTTGCCACTGAAGCAGAATCTTTAGGAATCTTGCAAGTGGATAGATAGGACATG
JMFF048C04+ GATACTGTTGCCACTGAAGCAGAATCTTTAGGAATCTTGCAAGTGGATAGATAGGACATG
JMSF034G14+ GATACTGTTGCCACTGAAGCAGAATCTTTAGGAATCTTGCAAGTGGATAGATAGGACATG
JMSF006J11+ GATACTGTTGCCACTGAAGCAGAATATTTAGGAATCTTGCAAGTGGATAGATAGGACATG
JMSF008J11+ GATACTGTTGCCACTGAAGCAGAATCTTTAGGAATCTTGCAAGTGGATAGATAGGACATG
____________________________________________________________
consensus GATACTGTTGCCACTGAAGCAGAATCTTTAGGAATCTTGCAAGTGGATAGATAGGACATG
. : . : . : . : . : . :
JMSF036H07+ TTTAATGCTTAAACTATGAATCACCATGCCCTCTCATTCACCTTTGTAGATGCCATAAAC
JMSF037J05+ TTTAATGCTTAAACTATGAATCACCATGCCCTCTCATTCACCTTNGTAGATGCCATAAAC
JMFF048C04+ TTTAATGCTTAAACTATGAATCACCATGCCCTCTCATTCACCTTTGTAGATGCCATAAAC
JMSF034G14+ TTTAATGCTTAAACTATGAATCACCATGCCCTCTCATTCACCTTTGTAGATGCCATAAAC
JMSF006J11+ TTTAATGCTTAAACTATGAATCACCATGCCCTCTCATTCACCTTTGTAGATGCCATAAAC
JMSF008J11+ TTTAATGCTTAAACTATGAATCACCATGCCCTCTCATTCACCTTTGTAGATGCCATAAAC
____________________________________________________________
consensus TTTAATGCTTAAACTATGAATCACCATGCCCTCTCATTCACCTTTGTAGATGCCATAAAC
. : . : . : . : . : . :
JMSF036H07+ AAAGAATTTTAAGATCTGATAGCATAGATAAATTAAATGGAGTC
JMSF037J05+ AAAGAATTTTAAGATCTGATAGCATAGATAAATTAAATGGAGTCT
JMFF048C04+ AAAGAATTTTAAGATCTGATAGCATAGATAAATTAAATGGAGTCTAGC
JMSF034G14+ AAAGAATTTTAAGATCTGATAGCATAGATAAATTAAATGGAGTCTAGC
JMSF006J11+ AAAGAATTTTAAGATCTGATAGCATAGATAAATTAAATGGAGTCTAGC
JMSF008J11+ AAAGAATTTTAAGATCTGATAGCATAGATAAATTAAATGGAGTCTAGCATTCTTGTGCTC
____________________________________________________________
consensus AAAGAATTTTAAGATCTGATAGCATAGATAAATTAAATGGAGTCTAGCATTCTTGTGCTC