Contig 004975:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044B08Sequence628004975 (4)gb|KDO65203.1|3e-78hypothetical protein CISIN_1g003528mg [Citrus sinensis]619007671 (18)emb|CDO97914.1|8e-75unnamed protein product [Coffea canephora]
JMFS051E01Sequence527004975 (4)gb|KDO65203.1|8e-66hypothetical protein CISIN_1g003528mg [Citrus sinensis]
JMSF007N09Sequence284004975 (4)ref|XP_010904950.1|3e-06PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Elaeis guineensis]737007671 (18)ref|XP_004235599.1|2e-29PREDICTED: protein ROOT HAIR DEFECTIVE 3 isoform X2 [Solanum lycopersicum]
JMSF019L01Sequence496004975 (4)ref|XP_010904950.1|3e-48PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Elaeis guineensis]717007671 (18)ref|XP_006342985.1|1e-31PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF044B08+ GCCAATATCATGACACCACAT
                      ____________________________________________________________
consensus GCCAATATCATGACACCACAT
 
. : . : . : . : . : . :
JMFF044B08+ GTTTATTAAAACTATATCAGAAACAGCAAGGGCAAACAAGGCACTTTGTTTTTCAAATGC
JMFS051E01+ AGCAAGGGCAAACAAGGCACTTTGTTTTTCAAATGC
                      ____________________________________________________________
consensus GTTTATTAAAACTATATCAGAAACAGCAAGGGCAAACAAGGCACTTTGTTTTTCAAATGC
 
. : . : . : . : . : . :
JMSF019L01+ CCATTACAAGGGTGCA
JMFF044B08+ TGTATCATCCTCTCCTCTCTCTCTTCCATCGGTGCCCTCTAAATCCATTACAAGGGTGCA
JMFS051E01+ TGTATCATCCTCTCCTCTCTTTCTTCCATCGGTGCCCTCTAAATCCATTACAAGGGTGCA
                      ____________________________________________________________
consensus TGTATCATCCTCTCCTCTCTTTCTTCCATCGGTGCCCTCTAAATCCATTACAAGGGTGCA
 
. : . : . : . : . : . :
JMSF019L01+ GGGTTCAATTCCAACACATTGAGCCATCCAAATACCTTTTGTGGTTTGTGTTCTTCCTTC
JMFF044B08+ GGGTTCAATTCCAACACATTGAGCCATCCAAATACCTTTTGTGGTTTGTGTTCTTCCTTC
JMFS051E01+ GGGTTCAATTCCAACACATTGAGCCATCCAAATACCTTTTGTGGTTTGTGTTCTTCCTTC
                      ____________________________________________________________
consensus GGGTTCAATTCCAACACATTGAGCCATCCAAATACCTTTTGTGGTTTGTGTTCTTCCTTC
 
. : . : . : . : . : . :
JMSF019L01+ AAAAGCATCCATCTCTCTAAAGTTTGTATCAAATAGATGATTCAACAGTGTGCTCTTTCC
JMFF044B08+ AAAAGCATCCATCTCTCTAAAGTTTGTATCAAATAGATGATTCAACAGTGTGCTCTTTCC
JMFS051E01+ AAAAGCATCCATCTCTCTAAAGTTTGTATCAAATAGATGATTCAACAGTGTGCTCTTTCC
                      ____________________________________________________________
consensus AAAAGCATCCATCTCTCTAAAGTTTGTATCAAATAGATGATTCAACAGTGTGCTCTTTCC
 
. : . : . : . : . : . :
JMSF019L01+ GCTACTTTGTGGGCCAATAATTGAAACAACAACATATGAACGCCCACAATCTGCCAATTT
JMFF044B08+ GCTACTTTGTGGGCCAATAATTGAAACAACAACATATGAACGCCCACAATCTGCCAATTT
JMFS051E01+ GCTACTTTGTGGGCCAATAATTGAAACAACAACATATGAACGCCCACAATCTGCCAATTT
                      ____________________________________________________________
consensus GCTACTTTGTGGGCCAATAATTGAAACAACAACATATGAACGCCCACAATCTGCCAATTT
 
. : . : . : . : . : . :
JMSF019L01+ AACCTTTGTCATGAAATGTTCAATTCCAGCAACATTGAATGTACCATCCCCATCAATGAG
JMFF044B08+ AACCTTTGTCATGAAATGTTCAATTCCAGCAACATTGAATGTACCATCCCCATCAATGAG
JMFS051E01+ AACCTTTGTCATGAAATGTTCAATTCCAGCAACATTGAATGTACCATCCCCATCAATGAG
JMSF007N09+ TGTTCAATTCCAGCAACATTGAATGTACCATCCCCATCAATGAG
                      ____________________________________________________________
consensus AACCTTTGTCATGAAATGTTCAATTCCAGCAACATTGAATGTACCATCCCCATCAATGAG
 
. : . : . : . : . : . :
JMSF019L01+ TTGAATTGAACAACACTC
JMFF044B08+ TTGAATTGAACAACACTC
JMFS051E01+ TTGAATTGAACAACACTCGCTGGTCATTTTGATATATGGTATCTAGTGTTCTTTCATTTA
JMSF007N09+ TTGAATTGAACAACACTCGCTGGTCATTTCGAAATATGGAAACAAGCGTACACTCCTTGA
                      ____________________________________________________________
consensus TTGAATTGAACAACACTCGCTGGTCATTTTGATATATGGTATCTAGTGTTCTTTCCTTTA
 
. : . : . : . : . : . :
JMFS051E01+ TTCATTGGGCTGTTTCCTCAGACAATGAGAGTAAGAATCGATGAGTCGTTAAGAACATGA
JMSF007N09+ GCCAGAGGGCAGTCTCCACAGACAATGAGAGTAAGAATCGCTGAGTCGCTAAGAACCTGA
                      ____________________________________________________________
consensus TTCATTGGGCTGTTTCCTCAGACAATGAGAGTAAGAATCGCTGAGTCGTTAAGAACCTGA
 
. : . : . : . : . : . :
JMFS051E01+ GTAGGCATTGAGTTAGAGAGGCGAGAGAGATGCGAGAGGGTGAGAGGGTGAGAGGGTGAG
JMSF007N09+ GGCGGCAGAGAGTGAGAGAGGCGAGAGAGATGCGAGAGGGTGAGAGGGTGAGAGGGTGAG
                      ____________________________________________________________
consensus GTCGGCATTGAGTTAGAGAGGCGAGAGAGATGCGAGAGGGTGAGAGGGTGAGAGGGTGAG
 
. : . : . : . : . : . :
JMFS051E01+ AGGGTGAGGTA
JMSF007N09+ AGGGTGAGGTAGCCTGAGGCAGAGAGTGAGAGATGCGAGAGGGTGAGGCTGAGAGATGCC
                      ____________________________________________________________
consensus AGGGTGAGGTAGCCTGAGGCAGAGAGTGAGAGATGCGAGAGGGTGAGGCTGAGAGATGCC