Contig 004975:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044B08Sequence628004975 (4)gb|KDO65203.1|3e-78hypothetical protein CISIN_1g003528mg [Citrus sinensis]619007671 (18)emb|CDO97914.1|8e-75unnamed protein product [Coffea canephora]
JMFS051E01Sequence527004975 (4)gb|KDO65203.1|8e-66hypothetical protein CISIN_1g003528mg [Citrus sinensis]
JMSF007N09Sequence284004975 (4)ref|XP_010904950.1|3e-06PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Elaeis guineensis]737007671 (18)ref|XP_004235599.1|2e-29PREDICTED: protein ROOT HAIR DEFECTIVE 3 isoform X2 [Solanum lycopersicum]
JMSF019L01Sequence496004975 (4)ref|XP_010904950.1|3e-48PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Elaeis guineensis]717007671 (18)ref|XP_006342985.1|1e-31PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFF044B08+                                                  GCCAATATCATGACACCACAT
                      ____________________________________________________________
consensus                                                    GCCAATATCATGACACCACAT
 
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JMFF044B08+           GTTTATTAAAACTATATCAGAAACAGCAAGGGCAAACAAGGCACTTTGTTTTTCAAATGC
JMFS051E01+                                   AGCAAGGGCAAACAAGGCACTTTGTTTTTCAAATGC
                      ____________________________________________________________
consensus             GTTTATTAAAACTATATCAGAAACAGCAAGGGCAAACAAGGCACTTTGTTTTTCAAATGC
 
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JMSF019L01+                                                       CCATTACAAGGGTGCA
JMFF044B08+           TGTATCATCCTCTCCTCTCTCTCTTCCATCGGTGCCCTCTAAATCCATTACAAGGGTGCA
JMFS051E01+           TGTATCATCCTCTCCTCTCTTTCTTCCATCGGTGCCCTCTAAATCCATTACAAGGGTGCA
                      ____________________________________________________________
consensus             TGTATCATCCTCTCCTCTCTTTCTTCCATCGGTGCCCTCTAAATCCATTACAAGGGTGCA
 
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JMSF019L01+           GGGTTCAATTCCAACACATTGAGCCATCCAAATACCTTTTGTGGTTTGTGTTCTTCCTTC
JMFF044B08+           GGGTTCAATTCCAACACATTGAGCCATCCAAATACCTTTTGTGGTTTGTGTTCTTCCTTC
JMFS051E01+           GGGTTCAATTCCAACACATTGAGCCATCCAAATACCTTTTGTGGTTTGTGTTCTTCCTTC
                      ____________________________________________________________
consensus             GGGTTCAATTCCAACACATTGAGCCATCCAAATACCTTTTGTGGTTTGTGTTCTTCCTTC
 
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JMSF019L01+           AAAAGCATCCATCTCTCTAAAGTTTGTATCAAATAGATGATTCAACAGTGTGCTCTTTCC
JMFF044B08+           AAAAGCATCCATCTCTCTAAAGTTTGTATCAAATAGATGATTCAACAGTGTGCTCTTTCC
JMFS051E01+           AAAAGCATCCATCTCTCTAAAGTTTGTATCAAATAGATGATTCAACAGTGTGCTCTTTCC
                      ____________________________________________________________
consensus             AAAAGCATCCATCTCTCTAAAGTTTGTATCAAATAGATGATTCAACAGTGTGCTCTTTCC
 
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JMSF019L01+           GCTACTTTGTGGGCCAATAATTGAAACAACAACATATGAACGCCCACAATCTGCCAATTT
JMFF044B08+           GCTACTTTGTGGGCCAATAATTGAAACAACAACATATGAACGCCCACAATCTGCCAATTT
JMFS051E01+           GCTACTTTGTGGGCCAATAATTGAAACAACAACATATGAACGCCCACAATCTGCCAATTT
                      ____________________________________________________________
consensus             GCTACTTTGTGGGCCAATAATTGAAACAACAACATATGAACGCCCACAATCTGCCAATTT
 
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JMSF019L01+           AACCTTTGTCATGAAATGTTCAATTCCAGCAACATTGAATGTACCATCCCCATCAATGAG
JMFF044B08+           AACCTTTGTCATGAAATGTTCAATTCCAGCAACATTGAATGTACCATCCCCATCAATGAG
JMFS051E01+           AACCTTTGTCATGAAATGTTCAATTCCAGCAACATTGAATGTACCATCCCCATCAATGAG
JMSF007N09+                           TGTTCAATTCCAGCAACATTGAATGTACCATCCCCATCAATGAG
                      ____________________________________________________________
consensus             AACCTTTGTCATGAAATGTTCAATTCCAGCAACATTGAATGTACCATCCCCATCAATGAG
 
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JMSF019L01+           TTGAATTGAACAACACTC                                          
JMFF044B08+           TTGAATTGAACAACACTC                                          
JMFS051E01+           TTGAATTGAACAACACTCGCTGGTCATTTTGATATATGGTATCTAGTGTTCTTTCATTTA
JMSF007N09+           TTGAATTGAACAACACTCGCTGGTCATTTCGAAATATGGAAACAAGCGTACACTCCTTGA
                      ____________________________________________________________
consensus             TTGAATTGAACAACACTCGCTGGTCATTTTGATATATGGTATCTAGTGTTCTTTCCTTTA
 
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JMFS051E01+           TTCATTGGGCTGTTTCCTCAGACAATGAGAGTAAGAATCGATGAGTCGTTAAGAACATGA
JMSF007N09+           GCCAGAGGGCAGTCTCCACAGACAATGAGAGTAAGAATCGCTGAGTCGCTAAGAACCTGA
                      ____________________________________________________________
consensus             TTCATTGGGCTGTTTCCTCAGACAATGAGAGTAAGAATCGCTGAGTCGTTAAGAACCTGA
 
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JMFS051E01+           GTAGGCATTGAGTTAGAGAGGCGAGAGAGATGCGAGAGGGTGAGAGGGTGAGAGGGTGAG
JMSF007N09+           GGCGGCAGAGAGTGAGAGAGGCGAGAGAGATGCGAGAGGGTGAGAGGGTGAGAGGGTGAG
                      ____________________________________________________________
consensus             GTCGGCATTGAGTTAGAGAGGCGAGAGAGATGCGAGAGGGTGAGAGGGTGAGAGGGTGAG
 
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JMFS051E01+           AGGGTGAGGTA                                                 
JMSF007N09+           AGGGTGAGGTAGCCTGAGGCAGAGAGTGAGAGATGCGAGAGGGTGAGGCTGAGAGATGCC
                      ____________________________________________________________
consensus             AGGGTGAGGTAGCCTGAGGCAGAGAGTGAGAGATGCGAGAGGGTGAGGCTGAGAGATGCC