Contig 004973:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS003G01Sequence589004973 (3)ref|XP_009598549.1|7e-75PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Nicotiana tomentosi
JMSF007M08Sequence273004973 (3)ref|XP_004236158.1|4e-14PREDICTED: microtubule-associated protein TORTIFOLIA1 [Solanum lycopersicum]736006639 (135)gb|KJB08275.1|7e-134hypothetical protein B456_001G074300 [Gossypium raimondii]
JMSF014O16Sequence466004973 (3)ref|XP_009598549.1|7e-42PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Nicotiana tomentosi794014992ref|XP_009598549.1|5e-49PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Nicotiana tomentosi

Alignment

This contig is upended


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JMFS003G01+                                                               CAGCGCGG
                      ____________________________________________________________
consensus                                                                 CAGCGCGG
 
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JMFS003G01+           CGCCGATCTGAGAGTTCATTTCCTGTTCGGTGAACAGCGCCTCGAGGAACGGCTTCATGA
                      ____________________________________________________________
consensus             CGCCGATCTGAGAGTTCATTTCCTGTTCGGTGAACAGCGCCTCGAGGAACGGCTTCATGA
 
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JMFS003G01+           TGAAGGAGAACGGCGTCTTGGTTACGTGCAAGGAGATTGAGGCGGAGGCGGTGACGCAGG
                      ____________________________________________________________
consensus             TGAAGGAGAACGGCGTCTTGGTTACGTGCAAGGAGATTGAGGCGGAGGCGGTGACGCAGG
 
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JMFS003G01+           CGGAGCGGACGGCGGAGTCGTGGTCGCGGAGGCGGCGGATAACAGCACTGAGAAGCTTCG
JMSF014O16+                        GGAGTCGTGGTCGCGGAGGCGGCGGATAACAGCACTGAGAAGCTTCG
                      ____________________________________________________________
consensus             CGGAGCGGACGGCGGAGTCGTGGTCGCGGAGGCGGCGGATAACAGCACTGAGAAGCTTCG
 
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JMFS003G01+           AGAGGTAAGGAGACAGCAAGTTGCCGTGGTTTTCGGAGAGGATGGAAATAAGGCGCAGGC
JMSF014O16+           AGAGGTAAGGAGACAGCAAGTTGCCGTGGTTTTCGGAGAGGATGGAAATAAGGCGCAGGC
                      ____________________________________________________________
consensus             AGAGGTAAGGAGACAGCAAGTTGCCGTGGTTTTCGGAGAGGATGGAAATAAGGCGCAGGC
 
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JMFS003G01+           ATTCCTTCCGGACCGGAGACTTATCGGAGGAATCAGTGGCGGCTATGGAGGAGAGGAACG
JMSF014O16+           ATTCCTTCCGGACCGGAGACTTATCGGAGGAATCAGTGGCGGCTATGGAGGAGAGGAACG
                      ____________________________________________________________
consensus             ATTCCTTCCGGACCGGAGACTTATCGGAGGAATCAGTGGCGGCTATGGAGGAGAGGAACG
 
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JMFS003G01+           GCGGAATAGTTTCACTTGAAAGGGCTTTAGCAATGGCCTCGAGCTCAATCGCCGACGCGG
JMSF014O16+           GCGGAATAGTTTCACTTGAAAGGGCTTTAGCAATGGCCTCGAGCTCAATCGCCGCCGCGG
JMSF007M08+                                                             GCCGCCGCGG
                      ____________________________________________________________
consensus             GCGGAATAGTTTCACTTGAAAGGGCTTTAGCAATGGCCTCGAGCTCAATCGCCGCCGCGG
 
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JMFS003G01+           AATGCGTGTCCCGGTCCGAGAGCTTGTGGAGGCACGTGAGCACTCGGTGCTTCAAGTCAC
JMSF014O16+           AATGCGTGTCCCGGTCCGAGAGCTTGTGGAGGCACGTGAGCACTCGGTGCTTCAAGTCAC
JMSF007M08+           AATGCGTGTCCCGGTCCGAGAGCTTGTGGAGGCACGTGAGCACTCGGTGCTTCAAGTCAC
                      ____________________________________________________________
consensus             AATGCGTGTCCCGGTCCGAGAGCTTGTGGAGGCACGTGAGCACTCGGTGCTTCAAGTCAC
 
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JMFS003G01+           GTGCTTGGTTCTGGCTCCCGCTTTCTCGTCATCGACATCTTCTCTCTCTCTCTCTCTATA
JMSF014O16+           GTGCTTGGTTCTGGTT-CTGCTTTCTCGTCATCGACATCTTCTCTCTCTCTCTCTCTATA
JMSF007M08+           GTGCTTGGTTCTGGTT-CTGCTTTCTCGTCATCGACATCTTCTCTCTCTCTCTCTCTATA
                      ____________________________________________________________
consensus             GTGCTTGGTTCTGGTT-CTGCTTTCTCGTCATCGACATCTTCTCTCTCTCTCTCTCTATA
 
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JMFS003G01+           TATATCTGAAATAGCCTAAGAATAAATTTGACGGAGGAGTTAGGAATGAGGTGGCGGCGC
JMSF014O16+           TATATCTGAAATAGCCTAAGAATAAATTTGACGGAGGAGTTAGGAATGAGGTGGCGGCGC
JMSF007M08+           TATATCTGAAATAGCCTAAGAATAAATTTGACGGAGGAGTTAGGAATGAGGTGGCGGCGC
                      ____________________________________________________________
consensus             TATATCTGAAATAGCCTAAGAATAAATTTGACGGAGGAGTTAGGAATGAGGTGGCGGCGC
 
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JMFS003G01+           CGGTGGGATCTCCGGCGGCATGTCACGGCGGTGGGCGGTGA                   
JMSF014O16+           CGGTGGGATCTCCGGCGGCATGTCACGGCGGTGGGCGGTGATCTTTGGTGTGAGGTGTCC
JMSF007M08+           CGGTGGGATCTCCGGCGGCATGTCACGGCGGTGGGCGGTGATCTTTGGTGTGAGGTGTCC
                      ____________________________________________________________
consensus             CGGTGGGATCTCCGGCGGCATGTCACGGCGGTGGGCGGTGATCTTTGGTGTGAGGTGTCC