| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016A14 | Sequence | 549 | 004966 (4) | ref|XP_009779974.1| | 5e-76 | PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Nico | 792 | 001084 (3) | ref|XP_009779974.1| | 9e-81 | PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Nico |
| JMFF037N05 | Sequence | 574 | 004966 (4) | ref|XP_009779975.1| | 5e-79 | PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X2 [Nico | 773 | 001084 (3) | ref|XP_009779974.1| | 3e-64 | PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Nico |
| JMFS092B01 | Sequence | 619 | 004966 (4) | ref|XP_009779974.1| | 2e-91 | PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Nico | |||||
| JMSF007C06 | Sequence | 353 | 004966 (4) | ref|XP_009779975.1| | 2e-38 | PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X2 [Nico | 776 | 001084 (3) | ref|XP_009779974.1| | 7e-79 | PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Nico |
This contig is upended
. : . : . : . : . : . :
JMFS092B01+ GAT
____________________________________________________________
consensus GAT
. : . : . : . : . : . :
JMFS092B01+ GCATTCAGTTCTGTAAGCATTGTGCATGATGAAAACAAATTCTCAGATAGCACTGGTAGC
____________________________________________________________
consensus GCATTCAGTTCTGTAAGCATTGTGCATGATGAAAACAAATTCTCAGATAGCACTGGTAGC
. : . : . : . : . : . :
JMFS092B01+ TTGTTTCCCTCCACTTCCAACTTCATTAATTTTGAACAGTTTGCTAGATCTTCTGGCAAT
JMFF016A14+ TTGAACAGTTTGCTAGATCTTCTGGCAAT
JMFF037N05+ CCCTCCACTTCCAACTTCATTAATTTTGAACAGTTTGCTAGATCTTCTGGCAAT
____________________________________________________________
consensus TTGTTTCCCTCCACTTCCAACTTCATTAATTTTGAACAGTTTGCTAGATCTTCTGGCAAT
. : . : . : . : . : . :
JMFS092B01+ CCCGAAATATTATTGTTTGATGCCTTGAGTTCTGCTAGATTTGAACATCTTCCAAGGGAA
JMFF016A14+ CCCGAAATATTATTGTTTGATGCCTTGAGTTCTGCTAGATTTGAACATCTTCCAAGGGAA
JMFF037N05+ CCCGAAATATTATTGTTTGATGCCTTGAGTTCTGCTAGATTTGAACATCTTCCAAGGGAA
____________________________________________________________
consensus CCCGAAATATTATTGTTTGATGCCTTGAGTTCTGCTAGATTTGAACATCTTCCAAGGGAA
. : . : . : . : . : . :
JMFS092B01+ TCAGGAAGATCATTTAGTTGGTTGTTTGAGCAATCAAACTTGACAAGAGCTGCTGCTGCT
JMFF016A14+ TCAGGAAGATCATTTAGTTGGTTGTTTGAGCAATCAAACTTGACAAGAGCTGCTGCTGCT
JMFF037N05+ TCAGGAAGATCATTTAGTTGGTTGTTTGAGCAATCAAACTTGACAAGAGCTGCTGCTGCT
____________________________________________________________
consensus TCAGGAAGATCATTTAGTTGGTTGTTTGAGCAATCAAACTTGACAAGAGCTGCTGCTGCT
. : . : . : . : . : . :
JMFS092B01+ CCAATTACTTCTGGAATACTCTGAATCACATTAAATGACACATCCAATGATTTGAGCATT
JMFF016A14+ CCAATTACTTCTGGAATACTCTGAATCACATTAAATGACACATCCAATGATTTGAGCATT
JMFF037N05+ CCAATTACTTCTGGAATACTCTGAATCACANTAAATGACACATCCAATGATTTGAGCATT
____________________________________________________________
consensus CCAATTACTTCTGGAATACTCTGAATCACATTAAATGACACATCCAATGATTTGAGCATT
. : . : . : . : . : . :
JMFS092B01+ TGAAGCTCTCCAATAGCAGCTGGAAGGCATGTAAGCTTATTGTGGCTAACATTCAGCACA
JMFF016A14+ TGAAGCTCTCCAATAGCAGCTGGAAGGCATGTAAGCTTATTGTGGCTAACATTCAGCACA
JMFF037N05+ TGAAGCTCTCCAATAGCAGCTGGAAGGCATGTAAGCTTATTGTGGCTAACATTCAGCACA
JMSF007C06+ CTCCAATAGCAGCTGGAAGGCATGTAAGCTTATTGTGGCTAACATTCAGCACA
____________________________________________________________
consensus TGAAGCTCTCCAATAGCAGCTGGAAGGCATGTAAGCTTATTGTGGCTAACATTCAGCACA
. : . : . : . : . : . :
JMFS092B01+ GTTAACATAGGTAAATTACGGAGGTCTTCCTTCAATGATTCAACATCATTATGAGCCAAA
JMFF016A14+ GTTAACATAGGTAAATTACGGAGGTCTTCCTTCAATGATTCAACATCATTATGAGCCAAA
JMFF037N05+ GTTAACATAGGTAAATTACGGAGGTCTTCCTTCAATGATTCAACATCATTATGAGCCAAA
JMSF007C06+ GTTAACATAGGTAAATTACGGAGGTCTTCCTTCAATGATTCAACATCATTATGAGCCAAA
____________________________________________________________
consensus GTTAACATAGGTAAATTACGGAGGTCTTCCTTCAATGATTCAACATCATTATGAGCCAAA
. : . : . : . : . : . :
JMFS092B01+ ATCAACTTCTGCAGCTCTACTGCCTCCCACCATTTCTCATCCCCGCTAACTGCATCCAAG
JMFF016A14+ ATCAACTTCTGCAGCTCTACTGCCTCCCACCATTTCTCATCCCCGCTAACTGCATCCAAG
JMFF037N05+ ATCAACTTCTGCAGCTCTACTGCCTCCCACCATTTCTCATCCCCGCTAACTGCATCCAAG
JMSF007C06+ ATCAACTTCTGCAGCTCTACTGCCTCCCACCATTTCTCATCCCCGCTAACTGCATCCAAG
____________________________________________________________
consensus ATCAACTTCTGCAGCTCTACTGCCTCCCACCATTTCTCATCCCCGCTAACTGCATCCAAG
. : . : . : . : . : . :
JMFS092B01+ CTTTGGTAGACCTCGTCTGGCACTTCCCTGAGAGAACGATTCGATAAGTTGAGTGAACCA
JMFF016A14+ CTTTGGTAGACCTCGTCTGGCACTTCCCTGAGAGAACGATTCGATAAGTTGAGTGAACCA
JMFF037N05+ CTTTGGTAGACCTCGTCTGGCACTTCCCTGAGAGAACGATTCGATAAGTTGAGTGAACCA
JMSF007C06+ CTTTGGTAGACCTCGTCTGGCACTTCCCTGAGAGAACGATTCGATAAGTTGAGTGAACCA
____________________________________________________________
consensus CTTTGGTAGACCTCGTCTGGCACTTCCCTGAGAGAACGATTCGATAAGTTGAGTGAACCA
. : . : . : . : . : . :
JMFS092B01+ GAGGTTCTCGCAGCTTTCAAAACTCGATCCATGGCGGATTTTGCTGCATAAGCGAGTCGT
JMFF016A14+ GAGGTTCTCGCAGCTTTCAAAACTCGATCCATGGCGGATTTTGCTGCATAAGCGAGTCGT
JMFF037N05+ GAGGTTCTCGCAGCTTTCAAAACTCGATCCATGGCGGATTTTGCTGCATAAGCGAGTCGT
JMSF007C06+ GAGGTTCTCGCAGCTTTCAAAACTCGATCCATGGCGGATTTTGCTGCATAAGCGAGTCGT
____________________________________________________________
consensus GAGGTTCTCGCAGCTTTCAAAACTCGATCCATGGCGGATTTTGCTGCATAAGCGAGTCGT
. : . : . : . : . : . :
JMFS092B01+ GACTCGGCGATTCGGA
JMFF016A14+ GACTCGGCGATTCGGACAGGAATCTCAGATCGATCAAATT
JMFF037N05+ GACTCGGCGATTCGGACAGGAATCTCAGATCGATCTAATT
JMSF007C06+ GACTCGGCGATTCGGACAGGAATCTCAGATCGATCTAATTCCCTCTGTTGGCAGAAGACC
____________________________________________________________
consensus GACTCGGCGATTCGGACAGGAATCTCAGATCGATCTAATTCCCTCTGTTGGCAGAAGACC