Contig 004961:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF010F19-                                                   AATGGATAAAATCACAACA
                      ____________________________________________________________
consensus                                                      AATGGATAAAATCACAACA
 
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rJMSF006M17-                                            TTATTACGGCGTTCNATTTAAACAAA
rJMSF010F19-          ATTTACAACTGTACAAAATGGGTATATACAGTAATTATTACGGCGTTCAATTTAAACAAA
                      ____________________________________________________________
consensus             ATTTACAACTGTACAAAATGGGTATATACAGTAATTATTACGGCGTTCAATTTAAACAAA
 
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rJMSF006M17-          GCTTNATCAACTTAACTANTTNTCCATTATCAGAGCATAACGGATTGAAGAAAGGAAACT
rJMSF010F19-          GCTTAATCAACTTAACTAATTATCCATTATCAGAGCATAACGGATTGAAGAAAGGAAACT
                      ____________________________________________________________
consensus             GCTTAATCAACTTAACTAATTATCCATTATCAGAGCATAACGGATTGAAGAAAGGAAACT
 
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rJMSF006M17-          GAAATGGAACGCCCAANTTACNAAAAGCCCCAATTATATCACGAAATTAATCGAGCGCAT
rJMSF010F19-          GAAATGGAACGCCCAAATTACCAAAAGCCCCAATTATATCACGAAATTAATCGAGCGCAT
                      ____________________________________________________________
consensus             GAAATGGAACGCCCAAATTACCAAAAGCCCCAATTATATCACGAAATTAATCGAGCGCAT
 
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rJMSF006M17-          TGGGGNCAGTACAGTANNTCAAAATGGGGTTCCAAACCCACTGCNCTAAGAACCTCCGCC
rJMSF010F19-          TGGGGCCAGTACAGTAATTCAAAATGGGGTTCCAAACCCACTGCACTAAGAACCTCCGCC
                      ____________________________________________________________
consensus             TGGGGCCAGTACAGTAATTCAAAATGGGGTTCCAAACCCACTGCACTAAGAACCTCCGCC
 
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rJMSF006M17-          TGACCCCGTTCATGTTATACGTGNCACCATCTGCGCCGTTCAACATCTG           
rJMSF010F19-          TGACCCCGTTCATGTTATACGTGGCACCATCTGCGCCGTTCAACATCTGGCCGGTGTACG
                      ____________________________________________________________
consensus             TGACCCCGTTCATGTTATACGTGGCACCATCTGCGCCGTTCAACATCTGGCCGGTGTACG
 
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rJMSF010F19-          ACCCGCCGCCGCCGGTGCCGTAAATCCCCTCGCAGAGATCGGCGATTTCGACGGGGAAGC
                      ____________________________________________________________
consensus             ACCCGCCGCCGCCGGTGCCGTAAATCCCCTCGCAGAGATCGGCGATTTCGACGGGGAAGC
 
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rJMSF010F19-          TCGGGTCCTGGCCGGCGTACCACGCGTTCACCAGCGGGTTCGTGGAGACCTCCGCAA--T
rJMSF025C09-                                                           CTCCGCAATCT
                      ____________________________________________________________
consensus             TCGGGTCCTGGCCGGCGTACCACGCGTTCACCAGCGGGTTCGTGGAGACCTCCGCAATCT
 
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rJMSF010F19-          CGTGAGCGATCACGCTTATCATCCCGTCCACCCCGGCGTTCCCGTTGGGGGATTTTAGGG
rJMSF025C09-          CNTGAGCGATCACNCTTATCATCNCGTCCACNCCGGCGTTCCCGTTGGGGGATTTTAGGG
                      ____________________________________________________________
consensus             CGTGAGCGATCACGCTTATCATCCCGTCCACCCCGGCGTTCCCGTTGGGGGATTTTAGGG
 
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rJMSF010F19-          GTTTCAGACCCGGAATGTAGTCGGGTACGGCGAAGGGGTAGGCGCAGATTCCCGGGCATA
rJMSF025C09-          GTTTCAGACCCGGAATGTAGTCGGGTACGGCGAAGGGGTAGGCGCAGATTCCCGGGCATA
                      ____________________________________________________________
consensus             GTTTCAGACCCGGAATGTAGTCGGGTACGGCGAAGGGGTAGGCGCAGATTCCCGGGCATA
 
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rJMSF010F19-          ATTTGGCGGAGTTTCCGACCCAGGCGTACGGCAGCGTGTAGCCGACGATGGACGGGAAGG
rJMSF025C09-          ATTTGGCGGAGTTTCCGACCCAGGCGTACGGCAGCGTGTAGCCGACGATGGACGGGAAGG
JMSF039B04+                                  GCGTACGGCAGCGTGTAGCCGACGATGGACGGGAAGG
                      ____________________________________________________________
consensus             ATTTGGCGGAGTTTCCGACCCAGGCGTACGGCAGCGTGTAGCCGACGATGGACGGGAAGG
 
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rJMSF010F19-          TGAAGTAATGGAAGCCGCAGACGTTGTTGCAGAAATCCTGGACGTACACGTCGTCGGAGG
rJMSF025C09-          TGAAGTAATGGAAGCCGCAGACGTTGTTGCAGAAATCCTGGACGTACACGTCGTCGGAGG
JMSF039B04+           TGAAGTAATGGAAGCCGCAGACGTTGTTGCAGAAATCCTGGACGTACACGTCGTCGGAGG
                      ____________________________________________________________
consensus             TGAAGTAATGGAAGCCGCAGACGTTGTTGCAGAAATCCTGGACGTACACGTCGTCGGAGG
 
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rJMSF010F19-          TGAGCAA                                                     
rJMSF025C09-          TGAGCAATAGGTAGA                                             
JMSF039B04+           TGAGCAATAGGTAGACGCCGCTCTTAGGGTTAGTGGGCAACGGGCGGGAGGGCGCCGTGA
                      ____________________________________________________________
consensus             TGAGCAATAGGTAGACGCCGCTCTTAGGGTTAGTGGGCAACGGGCGGGAGGGCGCCGTGA
 
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JMSF039B04+           CGGCGGATTTAATCACGGACTGGACCGTTAACCGGGTCAGGGACTTGCCGTGGGAGTAAA
                      ____________________________________________________________
consensus             CGGCGGATTTAATCACGGACTGGACCGTTAACCGGGTCAGGGACTTGCCGTGGGAGTAAA
 
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JMSF039B04+           ACCGGTCGTTCTTCTCGGCGCCGAGGATCACATTCCGGGAAATATTGGCGCCGGTCTGAT
                      ____________________________________________________________
consensus             ACCGGTCGTTCTTCTCGGCGCCGAGGATCACATTCCGGGAAATATTGGCGCCGGTCTGAT
 
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JMSF039B04+           CGGTGTAGAGCCGGACCGTCTTCCACCACCCGGCAACGGACGGCCGCTTAACGGCATCCG
JMSF010F19+                                      ACCCGGCAACGGACGGCCGCTTAACGGCATCCG
                      ____________________________________________________________
consensus             CGGTGTAGAGCCGGACCGTCTTCCACCACCCGGCAACGGACGGCCGCTTAACGGCATCCG
 
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JMSF039B04+           CGGAAATAGCGGAAATGAATGCCCGGATAATCCGCTTCTGAGATTTGTCCCACCGGCCGT
JMSF010F19+           CGGAAATAGCGGAAATGAATGCCCGGATAATCCGCTTCTGAGATTTGTCCCACCGG-CGT
JMSF006M17+                                                                    CGT
                      ____________________________________________________________
consensus             CGGAAATAGCGGAAATGAATGCCCGGATAATCCGCTTCTGAGATTTGTCCCACCGGCCGT
 
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JMSF039B04+           ACCAAATGGGATAAACCGTTATATTCGCGGTAAGAACGGGGCCCATGTGGTATCTCAGGT
JMSF010F19+           ACCAAATGGGATAAACCGTTATATTCGCGGTAAGAACGGGGCCCATGTGGTATCTCAGGT
JMSF006M17+           ACCAAATGGGATAAACCGTTATATTCGCGGTAAGAACGGGGCCCATGTGGTATCTCAGGT
                      ____________________________________________________________
consensus             ACCAAATGGGATAAACCGTTATATTCGCGGTAAGAACGGGGCCCATGTGGTATCTCAGGT
 
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JMSF039B04+           GAACAAACTCCGACGAGCCCTCGTATTTCTTCGACCCGCCGAAGATCAAATCCGTCGAGT
JMSF010F19+           GAACAAACTCCGACGAGCCCTCGTATTTCTTCGACCCGCCGAAGATCAAATCCGTCGAGT
JMSF006M17+           GAACAAACTCCGACGAGCCCTCGTATTTCTTCGACCCGCCGAAGATCAAATCCGTCGAGT
                      ____________________________________________________________
consensus             GAACAAACTCCGACGAGCCCTCGTATTTCTTCGACCCGCCGAAGATCAAATCCGTCGAGT
 
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JMSF039B04+           TGGGCTTCTGGGCGGGCCACGGCCGCCACCCATCAACCCCGAACGGGCCGGCGGAGAAAA
JMSF010F19+           TGGGCTTCTGGGCGGGCCACGGCCGCCACCCATCAACCCCGAACGGGCCGGCGGAGAAAA
JMSF006M17+           TGGGCTTCTGGGCGGGCCACGGCCGCCACCCATCAACCCCGAACGGGCCGGCGGAGAAAA
                      ____________________________________________________________
consensus             TGGGCTTCTGGGCGGGCCACGGCCGCCACCCATCAACCCCGAACGGGCCGGCGGAGAAAA
 
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JMSF039B04+           TGAACATTCCGACTAGAACGACGAACACGAAACCCAAGCGCATTTTAGAGTAGAAACGAA
JMSF010F19+           TGAACATTCCGACTAGAACGACGAACACGAAACCCAAGCGCATTTTAGAGTAGAAACGAA
JMSF006M17+           TGAACATTCCGACTAGAACGACGAACACGAAACCCAAGCGCATTTTAGAGTAGAAACGAA
                      ____________________________________________________________
consensus             TGAACATTCCGACTAGAACGACGAACACGAAACCCAAGCGCATTTTAGAGTAGAAACGAA
 
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JMSF039B04+           AACGTTAAAAATCACAGAGAGATAAAGAAAGAGAGAGAGAGAAGGAGAAGGAGAGTACC 
JMSF010F19+           AACGTTAAAAA-AACAGAGAGATAAAGAAAGAGAGAGAGAGAAGGAGAAGGAGAGTACC 
JMSF006M17+           AACGTTAAAAA-AACAGAGAGATAAAGAAAGAGAGAGAGAGAAGGAGAAGGAGAGTACCC
                      ____________________________________________________________
consensus             AACGTTAAAAA-AACAGAGAGATAAAGAAAGAGAGAGAGAGAAGGAGAAGGAGAGTACCC