Contig 004960:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN028E05Sequence578004960 (8)
JMFN035D01Sequence481004960 (8)
JMSF002E10Sequence449004960 (8)443019208ref|XP_009796242.1|5e-27PREDICTED: ethylene-responsive transcription factor ERF010-like [Nicotiana sylv
JMSF006K23Sequence355004960 (8)351004960 (8)
JMSF025C09Sequence685004960 (8)274004961 (6)ref|XP_011101128.1|4e-51PREDICTED: protein EXORDIUM-like 3 [Sesamum indicum]
JMSF044E05Sequence747004960 (8)725004960 (8)

Alignment

This contig is upended


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JMFN035D01+               AAAGCTTAAATTATTCTCCCCCTTTTATTTGATAAATTAAAACTAAAGATAAAAAG
rJMSF044E05-                                                                 AAAAG
JMSF044E05+                                           TTGATAAATTAAAACTAAAGATAAAAAG
                      ____________________________________________________________
consensus                 AAAGCTTAAATTATTCTCCCCCTTTTATTTGATAAATTAAAACTAAAGATAAAAAG
 
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JMFN035D01+           GAAACATACACATATAGGATATAGCCTCTAAGGCTTCTTACATTCTGCTCCTTCCATCAC
rJMSF044E05-          GAAACATACACATATAGGATATAGCCTCTAAGGCTTCTTACATTCTGCTCCTTCCATCAC
JMSF025C09+                                             TTCTTACATTCTGCTCCTTCCATCAC
rJMSF006K23-              CATACACATATAGGATATAGCCTCTAAGGCTTCTTACATTCTGCTCCTTCCATCAC
JMSF044E05+           GAAACATACACATATAGGATATAGCCTCTAAGGCTTCTTACATTCTGCTCCTTCCATCAC
                      ____________________________________________________________
consensus             GAAACATACACATATAGGATATAGCCTCTAAGGCTTCTTACATTCTGCTCCTTCCATCAC
 
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JMFN035D01+           TCAAAGCTTGTGTACATAGCCACAGAGTGATGAAGAAAGCAAATTTATTTAGAAATTGAA
rJMSF044E05-          TCAAAGCTTGTGTACATAGCCACAGAGTGATGAAGAAAGCAAATTTATTTAGAAATTGAA
JMSF025C09+           TCAAAGCTTGTGTACATAGCCACAGAGTGATGAAGAAAGCAAATTTATTTAGAAATTGAA
JMFN028E05+               AGCTTGTGTGCATAGCCACAGAGTGATGAAGAGAGCCAATTTATTTAGAAATTGAT
rJMSF006K23-          TCAAAGCTTGTGTACATAGCCACAGAGTGATGAAGAAAGCAAATTTATTTAGAAATTGAA
JMSF044E05+           TCAAAGCTTGTGTACATAGCCACAGAGTGATGAAGAAAGCAAATTTATTTAGAAATTGAA
                      ____________________________________________________________
consensus             TCAAAGCTTGTGTACATAGCCACAGAGTGATGAAGAAAGCAAATTTATTTAGAAATTGAA
 
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JMFN035D01+           AAACACATATAGCTAGATAGTTATATATATAAAGCGGATCGGATCGGATCGGAGAAGAAC
rJMSF044E05-          AAACACATATAGCTAGATAGTTATATATATAAAGCGGATCGGATCGGATCGGAGAAGAAC
JMSF025C09+           AAACACATATAGCTAGATAGTTATATATATAAAGCGGATCGGATCGGATCGGAGAAGAAC
JMFN028E05+           GAACACATATAGCTACATAGTTATATATATAAAGCGGATCGGATCGGATCGGAGAAGAAC
rJMSF006K23-          AAACACATATAGCTAGATAGTTATATATATAAAGCGGATCGGATCGGATCGGAGAAGAAC
JMSF044E05+           AAACACATATAGCTAGATAGTTATATATATAAAGCGGATCGGATCGGATCGGAGAAGAAC
                      ____________________________________________________________
consensus             AAACACATATAGCTAGATAGTTATATATATAAAGCGGATCGGATCGGATCGGAGAAGAAC
 
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JMFN035D01+           ATAATAGTATATAGGGATGCATGCATTGCATGCATACAAGTTTAGGTTGATATTGGAAGA
rJMSF044E05-          ATAATAGTATATAGGGATGCATGCATTGCATGCATACAAGTTTAGGTTGATATTGGAAGA
JMSF025C09+           ATAATAGTATATAGGGATGCATGCATTGCATGCATACAAGTTTAGGTTGATATTGGAAGA
JMFN028E05+           ATAATAGTATATAGGTATGCATGCATTGCATGCATACAAGTTTAGGTTGATATTGAAAGA
rJMSF006K23-          ATAATAGTATATAGGGATGCATGCATTGCATGCATACAAGTTTAGGTTGATATTGGAAGA
JMSF044E05+           ATAATAGTATATAGGGATGCATGCATTGCATGCATACAAGTTTAGGTTGATATTGGAAGA
                      ____________________________________________________________
consensus             ATAATAGTATATAGGGATGCATGCATTGCATGCATACAAGTTTAGGTTGATATTGGAAGA
 
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JMFN035D01+           TTGGGCAGAGGGCCTACTTGGGACGCTGGGGTGACGGTACGCGTATTTCCAGATCTACCA
rJMSF044E05-          TTGGGCAGAGGGCCTACTTGGGACGCTGGGGTGACGGTACGCGTATTTCCAGATCTACCA
JMSF025C09+           TTGGGCAGAGGGCCTACTTGGGACGCTGGGGTGACGGTACGCGTATTTCCAGATCTACCA
JMFN028E05+           TTGGGCAAAGGGCCTACTTGGCACGCTGGGGTGACGGTACGGGTATTTCCAGATCTACCA
JMSF002E10+                                       GGGTGACGGTACGCGTATTTCCAGATCTACCA
rJMSF006K23-          TTGGGCAGAGGGCCTACTTGGGACGCTGGGGTGACGGTACGCGTATTTCCAGATCTACCA
JMSF044E05+           TTGGGCAGAGGGCCTACTTGGGACGCTGGGGTGACGGTACGCGTATTTCCAGATCTACCA
                      ____________________________________________________________
consensus             TTGGGCAGAGGGCCTACTTGGGACGCTGGGGTGACGGTACGCGTATTTCCAGATCTACCA
 
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JMFN035D01+           ACAGTAACGGTAGCCCCTAGCGTTACAATGGGACTACCGGGACAGGCTTGTGGCGGGAGA
rJMSF044E05-          ACAGTAACGGTAGCCCCTAGCGTTACAATGGGACTACCGGGACAGGCTTGTGGCGGGAGA
JMSF025C09+           ACAGTAACGGTAGCCCCTAGCGTTACAATGGGACTACCGGGACAGGCTTGTGGCGGGAGA
JMFN028E05+           ACAGTAACGGTAGCCCCTAGCGTTACAATGGCACTACCGGAACAGGCTTGTGGCGGGAGA
JMSF002E10+           ACAGTAACGGTAGCCCCTAGCGTTACAATGGGACTACCGGGACAGGCTTGTGGCGGGAGA
rJMSF006K23-          ACAGTAACGGTAGCCCCTAGCGTTACAATGGGACTACCGGGACAGGCTTGTG        
JMSF044E05+           ACAGTAACGGTAGCCCCTAGCGTTACAATGGGACTACCGGGACAGGCTTGTGGCGGGAGA
                      ____________________________________________________________
consensus             ACAGTAACGGTAGCCCCTAGCGTTACAATGGGACTACCGGGACAGGCTTGTGGCGGGAGA
 
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JMFN035D01+           AGAAGCAGGCACAGAGGCGACTCGATAGCAGTTCTTGTGCGGGGACCAACATTCACGGAA
rJMSF044E05-          AGAAGCAGGCACAGAGGCGACTCGATAGCAGTTCTTGTGCGGGGACCAACATTCACGGAA
JMSF025C09+           AGAAGCAGGCACAGAGGCGACTCGATAGCAGTTCTTGTGCGGGGACCAACATTCACGGAA
JMFN028E05+           AGAAGCAGGCACAAAGGCGACTCGATAGCAGTTCTTGTGCGGGGACCAACATTCACGGAA
JMSF002E10+           AGAAGCAGGCACAGAGGCGACTCGATAGCAGTTCTTGTGCGGGGACCAACATTCACGGAA
JMSF044E05+           AGAAGCAGGCACAGAGGCGACTCGATAGCAGTTCTTGTGCGGGGACCAACATTCACGGAA
JMSF006K23+               GCAGGCACAGAGGCGACTCGATAGCAGTTCTTGTGCGGGGACCAACATTCACGGAA
                      ____________________________________________________________
consensus             AGAAGCAGGCACAGAGGCGACTCGATAGCAGTTCTTGTGCGGGGACCAACATTCACGGAA
 
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JMFN035D01+           GCACT                                                       
rJMSF044E05-          GCACTGACCGTTCCGGTGGCTGAAGTGGTTGCAGTCAACACAACACCTCTTGGGACTATG
JMSF025C09+           GCACTGACCGTTCCGGTGGCTGAAGTGGTTGCAGTCAACACAACACCTCTTGGGACTATG
JMFN028E05+           GCACTGACCGTTCCGGTGGCTAGAGTGGTTGCAGTCAACACAACACCTCTTGGGACTATG
JMSF002E10+           GCACTGACCGTTCCGGTGGCTGAAGTGGTTGCAGTCAACACAACACCTCTTGGGACTATG
JMSF044E05+           GCACTGACCGTTCCGGTGGCTGAAGTGGTTGCAGTCAACACAACACCTCTTGGGACTATG
JMSF006K23+           GCACTGACCGTTCCGGTGGCTGAAGTGGTTGCAGTCAACACAACACCTCTTGGGACTATG
                      ____________________________________________________________
consensus             GCACTGACCGTTCCGGTGGCTGAAGTGGTTGCAGTCAACACAACACCTCTTGGGACTATG
 
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rJMSF044E05-          GTAGATCGGCCGCATAGCAATGAAGCTATGACGCCCTGCACGACGGGCGTTCCCGTGTTG
JMSF025C09+           GTAGATCGGCAGCATAGCAATGAAGCTATGACGCCCTGCACGACGGGCGTTCCCGTGTTG
JMFN028E05+           GTAGATCGGCCGCATAGCAATGAAGCTATGACGCCCTGCACGACGGGCGTTCCCGTGTTG
JMSF002E10+           GTAGATCGGCCGCATAGCAATGAAGCTATGACGCCCTGCACGACGGGCGTTCCCGTGTTG
JMSF044E05+           GTAGATCGGCCGCATAGCAATGAAGCTATGACGCCCTGCACGACGGGCGTTCCCGTGTTG
JMSF006K23+           GTAGATCGGCCGCATAGCAATGAAGCTATGACGCCCTGCACGACGGGCGTTCCCGTGTTG
                      ____________________________________________________________
consensus             GTAGATCGGCCGCATAGCAATGAAGCTATGACGCCCTGCACGACGGGCGTTCCCGTGTTG
 
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rJMSF044E05-          GCGCAAACAAGGGCGCCATTCAAGGTCACTGTGGTCACTGTATTAGCTGCCGATGGCG-C
JMSF025C09+           GCGCAAACAAGGGCGCCATTCAAGGTCACTGTGGTCACTGTATTAGCTGCCGATGGCG-C
JMFN028E05+           GCGCAAACAAGGGCGCCATTCAAGGTCACTGTGGTCCCTGTATTAGCTGCCGATGGCGCC
JMSF002E10+           GCGCAAACAAGGGCGCCATTCAAGGTCACTGTGGTCACTGTATTAGCTGCCGATGGCG-C
JMSF044E05+           GCGCAAACAAGGGCGCCATTCAAGGTCACTGTGGTCACTGTATTAGCTGCCGATGGCG-C
JMSF006K23+           GCGCAAACAAGGGCGCCATTCAAGGTCACTGTGGTCACTGTATTAGCTGCCGATGGCG-C
                      ____________________________________________________________
consensus             GCGCAAACAAGGGCGCCATTCAAGGTCACTGTGGTCACTGTATTAGCTGCCGATGGCG-C
 
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rJMSF044E05-          TGTTAATGCCACCATCGCTACGCACAAAAACATCAAAAAGGTTGCATAGGAATAAGAAGC
JMSF025C09+           TGTTAATGCCACCATCGCTACGCACAAAAACATCAAAAAGGTTGCATAGGAATAAGAAGC
JMFN028E05+           TGTTAATGCCACCATCGCTACGCACAAAAACATCAAAA                      
JMSF002E10+           TGTTAATGCCACCATCGCTACGCACAAAAACATCAAAAAGGTTGCATAGGAATAAGAAGC
JMSF044E05+           TGTTAATGCCACCATCGCTACGCACAAAAACATCAAAAAGGTTGCATAGGAATAAGAAGC
JMSF006K23+           TGTTAATGCCACCATCGCTACGCACAAAAACATCAAAAAGGTTGCATAGGAATAAGAAGC
                      ____________________________________________________________
consensus             TGTTAATGCCACCATCGCTACGCACAAAAACATCAAAAAGGTTGCATAGGAATAAGAAGC
 
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rJMSF044E05-          CATTGTATATATTTCGAGGGTTTGATTGATTGATTGATATATTTGTGCTGTGTG      
JMSF025C09+           CATTGTATATATTTCGAGGGTTTGATTGATTGATTGATATATTTGTGCTGTGTGTTC   
JMSF002E10+           CATTGTATATATTTCGAGGGTTTGATTGATTGATTGATATATTTGTGCTGTGTGTTC   
JMSF044E05+           CATTGTATATATTTCGAGGGTTTGATTGATTGATTGATATATTTGTGCTGTGTGTTC   
JMSF006K23+           CATTGTATATATTTCGAGGGTTTGATTGATTGATTGATATATTTGTGCTGTGTGTTCGTC
                      ____________________________________________________________
consensus             CATTGTATATATTTCGAGGGTTTGATTGATTGATTGATATATTTGTGCTGTGTGTTCGTC