| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF015E15 | Sequence | 456 | 004959 (10) | ref|XP_010279570.1| | 4e-46 | PREDICTED: 40S ribosomal protein S27-2-like [Nelumbo nucifera] | 530 | 004959 (10) | ref|XP_010279570.1| | 7e-28 | PREDICTED: 40S ribosomal protein S27-2-like [Nelumbo nucifera] |
| JMFF051A12 | Sequence | 559 | 004959 (10) | ref|XP_010279570.1| | 1e-45 | PREDICTED: 40S ribosomal protein S27-2-like [Nelumbo nucifera] | 455 | 004959 (10) | ref|XP_010279570.1| | 4e-46 | PREDICTED: 40S ribosomal protein S27-2-like [Nelumbo nucifera] |
| JMFS071H04 | Sequence | 422 | 004959 (10) | ref|XP_010279570.1| | 2e-46 | PREDICTED: 40S ribosomal protein S27-2-like [Nelumbo nucifera] | |||||
| JMSF002F11 | Sequence | 332 | 004959 (10) | ref|XP_010279570.1| | 7e-43 | PREDICTED: 40S ribosomal protein S27-2-like [Nelumbo nucifera] | 576 | 004959 (10) | ref|XP_010279570.1| | 1e-45 | PREDICTED: 40S ribosomal protein S27-2-like [Nelumbo nucifera] |
| JMSF006J24 | Sequence | 277 | 004959 (10) | ref|XP_010279570.1| | 4e-34 | PREDICTED: 40S ribosomal protein S27-2-like [Nelumbo nucifera] | |||||
| JMSF020I16 | Sequence | 497 | 004959 (10) | ref|XP_010279570.1| | 5e-46 | PREDICTED: 40S ribosomal protein S27-2-like [Nelumbo nucifera] | 451 | 004959 (10) | ref|XP_010279570.1| | 3e-46 | PREDICTED: 40S ribosomal protein S27-2-like [Nelumbo nucifera] |
This contig is upended
. : . : . : . : . : . :
rJMFF051A12- ATGAAACAG
____________________________________________________________
consensus ATGAAACAG
. : . : . : . : . : . :
rJMFF015E15- TAATTTGTCAAACACATCATTTTATAACACTGTTTATCTAA
rJMFF051A12- AATCTATCATTCGAAAACATAATTTGTCAAACACATCATTTTATAACACTGTTTATCTAA
JMFS071H04+ GTCAAACACATAATTTTATAACAGCGTTTATCTAA
rJMSF020I16- AACACATAATTTTATAACAGCGTTTATCTAA
____________________________________________________________
consensus AATCTATCATTCGAAAACATAATTTGTCAAACACATAATTTTATAACAGCGTTTATCTAA
. : . : . : . : . : . :
rJMFF015E15- AACACAAGTCTCAACACAAGCTACACATTGAAATTCAAAATTTTAGGAGTATATCAAACT
JMFF015E15+ CATTGAAATTCAAAATTTTAGGAGTATATCAAACT
rJMFF051A12- AACACAAGTCTCAACACAAGCTACACATTGAAATTCAAAATTTTAGGAGTATATCAAACT
JMFS071H04+ AACTCAAGTCTCAACATAAACTACACATTAAAATTCAAAATTTTAGGAATATATCAAACT
rJMSF020I16- AACTCAAGTCTCAACATAAACTACACATTAAAATTCAAAATTTTAGGAATATATCAAACT
____________________________________________________________
consensus AACTCAAGTCTCAACATAAACTACACATTGAAATTCAAAATTTTAGGAGTATATCAAACT
. : . : . : . : . : . :
rJMFF015E15- TCAAACAAAAAAAAAAGAGACAATATCCTGCCTTTAGTCACCCTTCCTCCTGAAANAGCA
JMFF015E15+ TCAAACAAAAAAAAAAGAGACAATATCCTGCCTTTAGTCACCCTTCCTCCTGAAAGAGCA
JMFF051A12+ TTAGTCACCCTTCCTCCTGAAAGAGCA
rJMFF051A12- TCAAACAAAAAAAAAAGAGACAATATCCTGCCTTTAGTCACCCTTCCTCCTGAAAGAGCA
JMFS071H04+ TCAAACA---AAAAAAGAGACAATATCAAGCCTTTAGTCACCCTTCCTCCTGAAAGAGCA
JMSF002F11+ TGAAAGAGCA
rJMSF002F11- TTAGTCACCCTTCCTCCTGAAAGAGCA
rJMSF020I16- TCAAACA---AAAAAAGAGACAATATCAAGCCTTTAGTCACCCTTCCTCCTGAAAGAGCA
JMSF020I16+ TTAGTCACCCTTCCTCCTGAAAGAGCA
____________________________________________________________
consensus TCAAACAAAAAAAAAAGAGACAATATCCTGCCTTTAGTCACCCTTCCTCCTGAAAGAGCA
. : . : . : . : . : . :
rJMFF015E15- TCCCTCCGNGAGTCTGGCACGCCCACCAGTAGGCTGGCACAATACCGTCTGGCAGTCCCC
JMFF015E15+ TCCCTCCGTGAGTCTGGCACGCCCACCAGTAGGCTGGCACAATACCGTCTGGCAGTCCCC
JMFF051A12+ TCCCTCCGTGAGTCTGGCACGCCCACCAGTAGGCTGGCACAATACCGTCTGGCAGTCCCC
rJMFF051A12- TCCCTCCGTGAGTCTGGCACGCCCACCAGTAGGCTGGCACAATACCGTCTGGCAGTCCCC
JMFS071H04+ TCCCTCCGTGAGTCTGGCACGCCCACCAGTCGGCTGGCACAATACTGTCTGGCAGTTCCC
JMSF002F11+ TCCCTCCGTGAGTCTGGCACGCCCACCAGTCGGCTGGCACAATACTGTCTGGCAGTTCCC
rJMSF002F11- TCCCTCCGTGAGTCTGGCACGCCCACCAGTCGGCTGGCACAATACTGTCTGGCAGTTCCC
rJMSF020I16- TCCCTCCGTGAGTCTGGCACGCCCACCAGTCGGCTGGCACAATACTGTCTGGCAGTTCCC
JMSF020I16+ TCCCTCCGTGAGTCTGGCACGCCCACCAGTCGGCTGGCACAATACTGTCTGGCAGTTCCC
JMSF006J24+ CACCAGTCGGCTGGCACAATACTGTCTGGCAGTTCCC
____________________________________________________________
consensus TCCCTCCGTGAGTCTGGCACGCCCACCAGTCGGCTGGCACAATACTGTCTGGCAGTTCCC
. : . : . : . : . : . :
rJMFF015E15- GCACACCACAACAGTCTGANAGNGGCTGAACACAGNGGTTATGTTGAANCAACCTTGACA
JMFF015E15+ GCACACCACAACAGTCTGAGAGTGGCTGAACACAGTGGTTATGTTGAAGCAACCTTGACA
JMFF051A12+ GCACACCACAACAGTCTGAGAGTGGCTGAACACAGTGGTTATGTTGAAGCAACCTTGACA
rJMFF051A12- GCACACCACAACAGTCTGAGAGTGGCTGAACACAGTGGTTATGTTGAAGCAACCTTGACA
JMFS071H04+ GCACACCACAACAGTCTGAGAGTGGCTAAACACAGTGGTTATATTGAAGCAACCTTGACA
JMSF002F11+ GCACACCACAACAGTCTGAGAGTGGCTAAACACAGTGGTTATATTGAAGCAACCTTGACA
rJMSF002F11- GCACACCACAACAGTCTGAGAGTGGCTAAACACAGTGGTTATATTGAAGCAACCTTGACA
rJMSF020I16- GCACACCACAACAGTCTGAGAGTGGCTAAACACAGTGGTTATATTGAAGCAACCTTGACA
JMSF020I16+ GCACACCACAACAGTCTGAGAGTGGCTAAACACAGTGGTTATATTGAAGCAACCTTGACA
JMSF006J24+ GCACACCACAACAGTCTGAGAGTGGCTAAACACAGTGGTTATATTGAAGCAACCTTGACA
____________________________________________________________
consensus GCACACCACAACAGTCTGAGAGTGGCTAAACACAGTGGTTATATTGAAGCAACCTTGACA
. : . : . : . : . : . :
rJMFF015E15- CTTGACATCCATGAAAAAANAATTGGGANACTGCACNAGGCGCTTGANCTTGNGCTTTTT
JMFF015E15+ CTTGACATCCATGAAGAAAGAATTGGGAGACTGCACGAGGCGCTTGAGCTTGTGCTTTTT
JMFF051A12+ CTTGACATCCATGAAGAAAGAATTGGGAGACTGCACGAGGCGCTTGAGCTTGTGCTTTTT
rJMFF051A12- CTTGACATCCATGAAGAAAGAATTGGGAGACTGCACGAGGCGCTTGAGCTTGTGCTTTTT
JMFS071H04+ CTTGACATCCATGAAGAAAGAATTGGGAGACTGCACGAGGCGCTTGAGTTTGTGCTTTTT
JMSF002F11+ CTTGACATCCATGAAGAAAGAATTGGGAGACTGCACGAGGCGCTTGAGTTTGTGCTTTTT
rJMSF002F11- CTTGACATCCATGAAGAAAGAATTGGGAGACTGCACGAGGCGCTTGAGTTTGTGCTTTTT
rJMSF020I16- CTTGACATCCATGAAGAAAGAATTGGGAGACTGCACGAGGCGCTTGAGTTTGTGCTTTTT
JMSF020I16+ CTTGACATCCATGAAGAAAGAATTGGGAGACTGCACGAGGCGCTTGAGTTTGTGCTTTTT
JMSF006J24+ CTTGACATCCATGAAGAAAGAATTGGGAGACTGCACGAGGCGCTTGAGTTTGTGCTTTTT
____________________________________________________________
consensus CTTGACATCCATGAAGAAAGAATTGGGAGACTGCACGAGGCGCTTGAGTTTGTGCTTTTT
. : . : . : . : . : . :
rJMFF015E15- CTTCTCNAGCTCANCAGGAGGGTTCAACAAATCNATATCGTT
JMFF015E15+ CTTCTCGAGCTCAGCAGGAGGGTTCAACAAATCGATATCGTTTGGGAGAACCATT
JMFF051A12+ CTTCTCGAGCTCAGCAGGAGGGTTCAACAAATCGATATCGTTTGGGAGAACCATT
rJMFF051A12- CTTCTCGAGCTCAGCAGGAGGGTTCAACAAATCGATATCGTTTGGGAGAACCATTTTGTG
JMFS071H04+ CTTCTCGAGCTCAGCAGGAGGGTTCAACAAATCGATATCGTTTGGGAGAACCATTTCGTG
JMSF002F11+ CTTCTCGAGCTCAGCAGGAGGGTTCAACAAATCGATATCGTTTGGGAGAACCATTTCGTG
rJMSF002F11- CTTCTCGAGCTCAGCAGGAGGGTTCAACAAATCGATATCGTTTGGGAGAACCATTTCGTG
rJMSF020I16- CTTCTCGAGCTCAGCAGGAGGGTTCAACAAATCGATATCGTTTGGGAGAACCATTTCGTG
JMSF020I16+ CTTCTCGAGCTCAGCAGGAGGGTTCAACAAATCGATATCGTTTGGGAGAACCATTTCGTG
JMSF006J24+ CTTCTCGAGCTCAGCAGGAGGGTTCAACAAATCGATATCGTTTGGGAGAACCATTTCGTG
____________________________________________________________
consensus CTTCTCGAGCTCAGCAGGAGGGTTCAACAAATCGATATCGTTTGGGAGAACCATTTCGTG
. : . : . : . : . : . :
rJMFF051A12- AAAGAAAACCGGAACTCTGAAACGAA
JMFS071H04+ AAAGAAAACCGGAACTCTGAAACGAAAGAA
JMSF002F11+ AAAGAAAACCGGAACTCTGAAACGAAAGAAGAGATGGAGACTCGGAAGAA
rJMSF002F11- AAAGAAAACCGGAACTCTGAAACGAAAGAAGAGATGGAGACTCGGAAGAA
rJMSF020I16- AAAGAAAACCGGAACTCTGAAACGAAAGAAGAGATGGAGACTCGGAAGAATGCCT
JMSF020I16+ AAAGAAAACCGGAACTCTGAAACGAAAGAAGAGATGGAGACTCGGAAGAATGCCT
JMSF006J24+ AAAGAAAACCGGAACTCTGAAACGAAGGAAGAGATGGAGACTCGGAAGAATGCCTGAACC
____________________________________________________________
consensus AAAGAAAACCGGAACTCTGAAACGAAAGAAGAGATGGAGACTCGGAAGAATGCCTGAACC