| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF043B01 | Sequence | 638 | 004958 (5) | ref|XP_010647270.1| | 5e-64 | PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera] emb|CBI41067.3| u | 203 | 012415 (4) | |||
| JMSF002H02 | Sequence | 375 | 004958 (5) | emb|CDP03957.1| | 2e-37 | unnamed protein product [Coffea canephora] | 763 | 012415 (4) | ref|XP_004171234.1| | 2e-115 | PREDICTED: HAUS augmin-like complex subunit 3-like, partial [Cucumis sativus] |
| JMSF005E03 | Sequence | 366 | 004958 (5) | ref|XP_009587805.1| | 7e-26 | PREDICTED: HAUS augmin-like complex subunit 3 isoform X4 [Nicotiana tomentosifo | |||||
| JMSF005F03 | Sequence | 366 | 004958 (5) | ref|XP_009587805.1| | 1e-29 | PREDICTED: HAUS augmin-like complex subunit 3 isoform X4 [Nicotiana tomentosifo | |||||
| JMSF006J16 | Sequence | 302 | 004958 (5) | 323 | 012415 (4) | gb|AFK38262.1| | 1e-15 | unknown [Lotus japonicus] | |||
This contig is upended
. : . : . : . : . : . :
JMFF043B01+ AGTGAGCATG
____________________________________________________________
consensus AGTGAGCATG
. : . : . : . : . : . :
JMFF043B01+ TCATACTGAGACTGCAAACACCTAAGCTGTTTCTGCAACTCCAAAGCTTCAGATTTAAAG
____________________________________________________________
consensus TCATACTGAGACTGCAAACACCTAAGCTGTTTCTGCAACTCCAAAGCTTCAGATTTAAAG
. : . : . : . : . : . :
JMFF043B01+ CTACGGTAGCATCCCTTATGTCTNTCAATCCTTCTTCACTTCCAAAAACTGCTTCTTGGT
____________________________________________________________
consensus CTACGGTAGCATCCCTTATGTCTNTCAATCCTTCTTCACTTCCAAAAACTGCTTCTTGGT
. : . : . : . : . : . :
JMSF002H02+ CT
JMFF043B01+ TGTCCCTCCTGGTTGAGAAGGCTGAAATGCTATCATAAGCAAAGTCTAAGTCCTCCCCCT
____________________________________________________________
consensus TGTCCCTCCTGGTTGAGAAGGCTGAAATGCTATCATAAGCAAAGTCTAAGTCCTCCCCCT
. : . : . : . : . : . :
JMSF002H02+ CCAAGAGCTTCCCTTCTTGTAGAAATTGTTCATATTGGGAAACTTCGGAGGGCGAAAGGA
JMSF005F03+ TCGGAGGGCGAAAGGA
JMSF005E03+ TCGGAGGNCGAAAGGA
JMFF043B01+ CCAAGAGCTTCCCTTCTTGTAGAAATTGTTCATATTGGGAAACTTCGGAGGGCGAAAGGA
____________________________________________________________
consensus CCAAGAGCTTCCCTTCTTGTAGAAATTGTTCATATTGGGAAACTTCGGAGGGCGAAAGGA
. : . : . : . : . : . :
JMSF002H02+ CGTTGGAAGGGCGGAGGCTAGAGCAAAGCCAATCGAGAATGGGTCGAGTGTCGTCATATT
JMSF005F03+ CGTTGGAAGGGCGGAGGCTAGAGCAAAGCCAATCGAGAATGGGTCGAGTGTCGTCATATT
JMSF005E03+ CGTTGGAAGGGCGGAGNCTAGAGCAAAGCCAATCGAGAATGGGTCGAGTGTCGTCATATT
JMFF043B01+ CGTTGGAAGGGCGGAGGCTAGAGCAAAGCCAATCGAGAATGGGTCGAGTGTCGTCATATT
____________________________________________________________
consensus CGTTGGAAGGGCGGAGGCTAGAGCAAAGCCAATCGAGAATGGGTCGAGTGTCGTCATATT
. : . : . : . : . : . :
JMSF002H02+ GGAATGGCCATTCAAAGCTGTCGGGATCGAGCGATTCGTGGCCTTCATAGCCCAAGTCTC
JMSF005F03+ GGAATGGCCATTCAAAGCTGTCGGGATCGAGCGATTCGTGGCCTTCATAGCCCAAGTCTC
JMSF005E03+ GGAATGGCCATTCAAAGCTGTCGGGATCGAGCGATTCGTGGCCTTCATAGCCCAAGTCTC
JMFF043B01+ GGAATGGCCATTCAAAGCTGTCGGGATCGAGCGATTCGTGGCCTTCATAGCCCAAGTCTC
JMSF006J16+ TC
____________________________________________________________
consensus GGAATGGCCATTCAAAGCTGTCGGGATCGAGCGATTCGTGGCCTTCATAGCCCAAGTCTC
. : . : . : . : . : . :
JMSF002H02+ CCAGCAGTGCGCACAGACGCGCACCGCTCATCTTTGATTGTTCACTACGACTGTTATGCT
JMSF005F03+ CCAGCAGTGCGCACAGACGCGCACCGCTCATCTTTGATTGTTCACTACGACTGTTATGCT
JMSF005E03+ CCAGCAGTGCGCACAGACGCGCACCGCTCATCTTTGATTGTTCACTACGACTGTTATGCT
JMFF043B01+ CCAGCAGTGCGCACAGACGCGCACCGCTCATCTTTGATTGTTCACTACGACTGTTATGCT
JMSF006J16+ CCAGCAGTGCGCACAGACGCGCACCGCTCATCTTTGATTGTTCACTACGACTGTTATGCT
____________________________________________________________
consensus CCAGCAGTGCGCACAGACGCGCACCGCTCATCTTTGATTGTTCACTACGACTGTTATGCT
. : . : . : . : . : . :
JMSF002H02+ ACTTTCACCGCCTCTCTTCTTCAGCAAAGCAGTGGGTGTTGCTTCAGATCCGAGGCAGAG
JMSF005F03+ ACTTTCACCGCCTCTCTTCTTCAGCAAAGCAGTGGGTGTTGCTTCAGATCCGAGGCAGAG
JMSF005E03+ ACTTTCACCGCCTCTCTTCTTCAGCAAAGCAGTGGGTGTTGCTTCAGATCCGAGGCAGAG
JMFF043B01+ ACTTTCACCGCCTCTCTTCTTCAGCAAAGCAGTGGGTGTTGCTTCAGATCCGAGGCAGAG
JMSF006J16+ ACTTTCACCGCCTCTCTTCTTCAGCAAAGCAGTGGGTGTTGCTTCAGATCCGAGGCAGAG
____________________________________________________________
consensus ACTTTCACCGCCTCTCTTCTTCAGCAAAGCAGTGGGTGTTGCTTCAGATCCGAGGCAGAG
. : . : . : . : . : . :
JMSF002H02+ GCGGTTACAGTTGGGCCATTTTCATTGCAATTGTGTAGCAAAACTGATAGGCCTTTCGGT
JMSF005F03+ GCGGTTACAGTTGGGCCATTTTCATTGCAATTGTGTAGCAAAACTGATAGGCCTTTCGGT
JMSF005E03+ GCGGTTACAGTTGGGCCATTTTCATTGCAATTGTGTAGCAAAACTGATAGGCCTTTCGGT
JMFF043B01+ GCGGTTACAGTTGGGCCATTTTCATTGCAATTGTGTAGCAAAACTGATAGGCCTTTCGGT
JMSF006J16+ GCGGTTACAGTTGGGCCATTTTCATTGCAATTGTGTAGCAAAACTGATAGGCCTTTCGGT
____________________________________________________________
consensus GCGGTTACAGTTGGGCCATTTTCATTGCAATTGTGTAGCAAAACTGATAGGCCTTTCGGT
. : . : . : . : . : . :
JMSF002H02+ GAGGGAGAGAG
JMSF005F03+ GAGGGAGAGAGTGAGAGCTGCTTTTGGCGCCGGCCAAAGTCGATTGGGC
JMSF005E03+ GAGGGAGAGAGTGAGAGCTGCTTTTGGCGCCGGCCAAAGTCGATTGGGC
JMFF043B01+ GAGGGAGAGAGTGAGAGCTGCTTTTGGCGCCGGCCAAAGTCGATTGGGCGATTTTTTCAT
JMSF006J16+ GAGGGAGAGAGTGAGAGCTGCTTTTGGCGCCGGCCAAAGTCGATTGGGCGATTTTTTCAT
____________________________________________________________
consensus GAGGGAGAGAGTGAGAGCTGCTTTTGGCGCCGGCCAAAGTCGATTGGGCGATTTTTTCAT
. : . : . : . : . : . :
JMFF043B01+ GAGCTTTACCAAATTTGAATATCAC
JMSF006J16+ GAGCTTTACCAAATTTGAATTTCACAATCTGGGAAAATAGCCATTTTGCCTTTACTTTCC
____________________________________________________________
consensus GAGCTTTACCAAATTTGAATTTCACAATCTGGGAAAATAGCCATTTTGCCTTTACTTTCC