Contig 004955:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006E11Sequence377004955 (2)ref|XP_006358076.1|1e-26PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650540008506 (7)ref|XP_006397961.1|1e-58hypothetical protein EUTSA_v10001688mg [Eutrema salsugineum] ref|XP_009116946.1|
JMSF006L07Sequence369004955 (2)ref|XP_006358076.1|2e-37PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650396012516 (3)gb|KHG06920.1|1e-39hypothetical protein F383_33692 [Gossypium arboreum]

Alignment

This contig is upended


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JMSF006L07+                                                       CACCAAGGAAGGAGGA
                      ____________________________________________________________
consensus                                                         CACCAAGGAAGGAGGA
 
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JMSF006L07+           AGAACACCCTGCAGATCCTGTCCTTTCAAAACTATGGTTTGAACATGGCAAATGGCACCT
JMSF006E11+                                                      CATGGCAAATGGCACCT
                      ____________________________________________________________
consensus             AGAACACCCTGCAGATCCTGTCCTTTCAAAACTATGGTTTGAACATGGCAAATGGCACCT
 
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JMSF006L07+           GGGAAGCTACAATTGCAAGTGAGAGAATTCATGTACAGAGGCATATCATTCCTTTGTGGT
JMSF006E11+           GGGAAGCTACAATTGCAAGTGAGAGAATTCATGTACAGAGGCATATCATTCCTTTGTGGT
                      ____________________________________________________________
consensus             GGGAAGCTACAATTGCAAGTGAGAGAATTCATGTACAGAGGCATATCATTCCTTTGTGGT
 
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JMSF006L07+           GTCAACCAGTTTGAGTTGTTGTTGTCACAAGGATTTAGTCCAAAATCCCAATCCTTCTTC
JMSF006E11+           GTCAACCAGTTTGAGTTGTTGTTGTCACAAGGATTTAGTCCAAAATCCCAATCCTTCTTC
                      ____________________________________________________________
consensus             GTCAACCAGTTTGAGTTGTTGTTGTCACAAGGATTTAGTCCAAAATCCCAATCCTTCTTC
 
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JMSF006L07+           CCCAATTCATCTGCTATTTCCCTAAGTGCATTTAATTCATCTGGAGGAAGCTGCCCACTC
JMSF006E11+           CCCAATTCATCTGCTATTTCCCTAAGTGCATTTAATTCATCTGGAGGAAGCTGCCCACTC
                      ____________________________________________________________
consensus             CCCAATTCATCTGCTATTTCCCTAAGTGCATTTAATTCATCTGGAGGAAGCTGCCCACTC
 
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JMSF006L07+           TGTGCTTCAACAAATCTTGCATTGAAGGAGAGTAGTATAATTGGTATGAGGATTATGAAC
JMSF006E11+           TGTGCTTCAACAAATCTTGCATTGAAGGAGAGTAGTATAATTGGTATGAGGATTATGAAC
                      ____________________________________________________________
consensus             TGTGCTTCAACAAATCTTGCATTGAAGGAGAGTAGTATAATTGGTATGAGGATTATGAAC
 
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JMSF006L07+           ATGGAGGCTGCCATGG                                            
JMSF006E11+           ATGGAGGCTGCCATGGATGGATTCTGGGGAAGATCAGCTTCAATTCTGCAGTGTTTTTCT
                      ____________________________________________________________
consensus             ATGGAGGCTGCCATGGATGGATTCTGGGGAAGATCAGCTTCAATTCTGCAGTGTTTTTCT
 
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JMSF006E11+           TACAGTGAATTGTCCAATAAAAACATGCGTGTCATTTTATATATTCATTACTGTACATCA
                      ____________________________________________________________
consensus             TACAGTGAATTGTCCAATAAAAACATGCGTGTCATTTTATATATTCATTACTGTACATCA