Contig 004954:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF026I13-                                TGGCTTTGTCTTTTGCTTTCTATCAAGCCAACTTCTCA
rJMSF053K17-                     TATCTTAAAAATGGCTTTGTCTTTTGCTTTCTATCAAGCCAACTTCTCA
                      ____________________________________________________________
consensus                        TATCTTAAAAATGGCTTTGTCTTTTGCTTTCTATCAAGCCAACTTCTCA
 
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rJMSF026I13-          AGATTAATAATAAATGCTGCTGCAACCGCCTCTCATCATCTCAAACTTCCATCGTATGTA
rJMSF053K17-          AGATTAATAATAAATGCTGCTGCAACCGCCTCTCATCATCTCAAACTTCCATCGTATGTA
                      ____________________________________________________________
consensus             AGATTAATAATAAATGCTGCTGCAACCGCCTCTCATCATCTCAAACTTCCATCGTATGTA
 
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rJMSF026I13-          CAGGTATAAGAAAATGAACCCAAAACACAGTGAAAGCCAAAGAAACTTGCTACGGCTTGT
rJMSF053K17-          CAGGTATAAGAAAATGAACCCAAAACACAGTGAAAGCCAAAGAAACTTGCTACGGCTTGT
                      ____________________________________________________________
consensus             CAGGTATAAGAAAATGAACCCAAAACACAGTGAAAGCCAAAGAAACTTGCTACGGCTTGT
 
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rJMSF026I13-          AATTTGTTAGGATCCCTGCACAAGACCCTCCCTAGGAACATTGGTCACTCGAAGGACAGC
rJMSF053K17-          AATTTGTTAGGATCCCTGCACAAGACCCTCCCTAGGAACATTGGTCACTCGAAGGACAGC
                      ____________________________________________________________
consensus             AATTTGTTAGGATCCCTGCACAAGACCCTCCCTAGGAACATTGGTCACTCGAAGGACAGC
 
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rJMSF026I13-          TTGAGCGTTCAAGGGTGAGAGCTTTGATTGGCAAAATTGCTCCCAAGAAATTGCTTCTTG
rJMSF053K17-          TTGAGCGTTCAAGGGTGAGAGCTTTGATTGGCAAAATTGCTCCCAAGAAATTGCTTCTTG
                      ____________________________________________________________
consensus             TTGAGCGTTCAAGGGTGAGAGCTTTGATTGGCAAAATTGCTCCCAAGAAATTGCTTCTTG
 
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rJMSF026I13-          ATCTTCAGTCACTGTTGTTGTTATCTTCTCATAGACACTTTGCAGCTCCAATAAAAGAGC
rJMSF053K17-          ATCTTCAGTCACTGTTGTTGTTATCTTCTCATAGACACTTTGCAGCTCCAATAAAAGAGC
JMSF053K17+                                        CATAGACACTTTGCAGCTCCAATAAAAGAGC
JMSF026I13+                                        CATAGACACTTTGCAGCTCCAATAAAAGAGC
                      ____________________________________________________________
consensus             ATCTTCAGTCACTGTTGTTGTTATCTTCTCATAGACACTTTGCAGCTCCAATAAAAGAGC
 
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rJMSF026I13-          ACGGGCAGCTTCCCTAGACTCAGGAAGTTGGTCACTAAGCTGAGATGCAGCAAATTGGAT
rJMSF053K17-          ACGGGCAGCTTCCCTAGACTCAGGAAGTTGGTCACTAAGCTGAGATGCAGCAAATTGGAT
JMSF053K17+           ACGGGCAGCTTCCCTAGACTCAGGAAGTTGGTCACTAAGCTGAGATGCAGCAAATTGGAT
JMSF026I13+           ACGGGCAGCTTCCCTAGACTCAGGAAGTTGGTCACTAAGCTGAGATGCAGCAAATTGGAT
                      ____________________________________________________________
consensus             ACGGGCAGCTTCCCTAGACTCAGGAAGTTGGTCACTAAGCTGAGATGCAGCAAATTGGAT
 
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rJMSF026I13-          CAACTTGTCTAGACCATAAGCTTCAATTCCCTCAACTCCTTGAGAATCATAGCTGCTGAG
rJMSF053K17-          CAACTTGTCTAGACCATAAGCTTCAATTCCCTCAACTCCTTGAGAATCATAGCTGCTGAG
JMSF053K17+           CAACTTGTCTAGACCATAAGCTTCAATTCCCTCAACTCCTTGAGAATCATAGCTGCTGAG
JMSF026I13+           CAACTTGTCTAGACCATAAGCTTCAATTCCCTCAACTCCTTGAGAATCATAGCTGCTGAG
                      ____________________________________________________________
consensus             CAACTTGTCTAGACCATAAGCTTCAATTCCCTCAACTCCTTGAGAATCATAGCTGCTGAG
 
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rJMSF026I13-          AGTTGTGTTGTTGTATCTCTGGGAGAGAACAACCCTAATCATAAATTCTTTATATTGATA
rJMSF053K17-          AGTTGTGTTGTTGTATCTCTGGGAGAGAACAACCCTAATCATAAATTCTTTATATTGATA
JMSF053K17+           AGTTGTGTTGTTGTATCTCTGGGAGAGAACAACCCTAATCATAAATTCTTTATATTGATA
JMSF026I13+           AGTTGTGTTGTTGTATCTCTGGGAGAGAACAACCCTAATCATAAATTCTTTATATTGATA
                      ____________________________________________________________
consensus             AGTTGTGTTGTTGTATCTCTGGGAGAGAACAACCCTAATCATAAATTCTTTATATTGATA
 
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rJMSF026I13-          CCGGATCAAGGTCAATATAAGTTGGACAAATCGAGCATTTGAATGCGTAGAGTAGTAATA
rJMSF053K17-          CCGGATCAAGGTCAATATAAGTTGGACAAATCGAGCATTTGAATGCGTAGAGTAGTAATA
JMSF053K17+           CCGGATCAAGGTCAATATAAGTTGGACAAATCGAGCATTTGAATGCGTAGAGTAGTAATA
JMSF026I13+           CCGGATCAAGGTCAATATAAGTTGGACAAATCGAGCATTTGAATGCGTAGAGTAGTAATA
                      ____________________________________________________________
consensus             CCGGATCAAGGTCAATATAAGTTGGACAAATCGAGCATTTGAATGCGTAGAGTAGTAATA
 
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rJMSF026I13-          TGAAACAGAGATGCCAAATCATGAAACCCAGCTTCTCTTCTGCCTGTAATTCTCATGAAC
rJMSF053K17-          TGAAACAGAGATGCCAAATCATGAAACCCAGCTTCTCTTCTGCCTGTAATTCTCATGAAC
JMSF053K17+           TGAAACAGAGATGCCAAATCATGAAACCCAGCTTCTCTTCTGCCTGTAATTCTCATGAAC
JMSF026I13+           TGAAACAGAGATGCCAAATCATGAAACCCAGCTTCTCTTCTGCCTGTAATTCTCATGAAC
                      ____________________________________________________________
consensus             TGAAACAGAGATGCCAAATCATGAAACCCAGCTTCTCTTCTGCCTGTAATTCTCATGAAC
 
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rJMSF026I13-          AATAGGCTATTTCCCTAAACTCATTGTCCTCATCGGCTAATTTATTGTACAATCTTTTCT
rJMSF053K17-          AATAGGCTATTTCCCTAAACTCATTGTCCTCATCGGCTAATTTATTGTACAATCTTTTCT
JMSF053K17+           AATAGGCTATTTCCCTAAACTCATTGTCCTCATCGGCTAATTTATTGTACAATCTTTTCT
JMSF026I13+           AATAGGCTATTTCCCTAAACTCATTGTCCTCATCGGCTAATTTATTGTACAATCTTTTCT
                      ____________________________________________________________
consensus             AATAGGCTATTTCCCTAAACTCATTGTCCTCATCGGCTAATTTATTGTACAATCTTTTCT
 
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rJMSF026I13-          TCTAGATCATATGCTATCTCTACTTGTTTCCTGGTATAGTAGCTCTAGAATCATGAGCTG
rJMSF053K17-          TCTAGATCATATGCTATCTCTACTTGTTTCCTGGTATAGTAGCTCTAGAATCATGAGCTG
JMSF053K17+           TCTAGATCATATGCTATCTCTACTTGTTTCCTGGTATAGTAGCTCTAGAATCATGAGCTG
JMSF026I13+           TCTAGATCATATGCTATCTCTACTTGTTTCCTGGTATAGTAGCTCTAGAATCATGAGCTG
JMSF005O06+                                                 GTAGCTCTAGAATCATGAGCTG
                      ____________________________________________________________
consensus             TCTAGATCATATGCTATCTCTACTTGTTTCCTGGTATAGTAGCTCTAGAATCATGAGCTG
 
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rJMSF026I13-          TGGCTCGGGCANGG--GTTTCGAAATTGGGATTTCTAGTG                    
rJMSF053K17-          TGGCTCGGGCAAGG-GTTTTCGAAATTGGGATTTCTAGTGGAAAATGCGATGAAGACCTA
JMSF053K17+           TGGCTCGGGCAAGG-GTTTTCGAAATTGGGATTTCTAGT-GAAAATGCGATGAAGACCTA
JMSF026I13+           TGGCTCGGGCAAGG-GTTTTCGAAATTGGGATTTCTAGT-GAAAATGCGATGAAGACCTA
JMSF005O06+           TGGCTCGGGCAAGGATTTTTCGAAATACCAATTTCTAGT-GAAAATACGATGAAGACCTA
                      ____________________________________________________________
consensus             TGGCTCGGGCAAGG-GTTTTCGAAATTGGGATTTCTAGT-GAAAATGCGATGAAGACCTA
 
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rJMSF053K17-          GGTGAAAGGAGGCTCAGGCGCGGGCAGTCTTCATCGCGGTAAACCGGGAGGTCTGTGATT
JMSF053K17+           GGTGAAAGGAGGCTCAGGCGCGGGCAGTCTTCATCGCGGTAAACC-GGAGGTCTGTGATT
JMSF026I13+           GGTGAAAGGAGGCTCAGGCGCGGGCAGTCTTCATCGCGGTAAACC-GGAGGTCTGTGATT
JMSF005O06+           GGTGAAAGGATGCTCAGGCGTGGGAAGTCTTCATCGCGGTAAACC-AGAGGTGTGTGATT
                      ____________________________________________________________
consensus             GGTGAAAGGAGGCTCAGGCGCGGGCAGTCTTCATCGCGGTAAACC-GGAGGTCTGTGATT
 
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rJMSF053K17-          CTTCTTGCTTCCGATGAAANGGAGGCTCAGGCGCGGGCAGTCTTCATCGCGCT-AACGGG
JMSF053K17+           CTTCTTGCTTCCGATGAAA-GGAGGCTCAGGCGCGGGCAGTCTTCATCGCGCTAAACGGG
JMSF026I13+           CTTCTTGCTTCCGATGAAA-GGAGGCTCAGGCGCGGGCAGTCTTCATCGCGCTAAACGGG
JMSF005O06+           CTTCTTGCTTCCGATGAAA-GGAGGCTCAGGCGCGGGCAGTCTTCATCGCGGTAAACCGG
                      ____________________________________________________________
consensus             CTTCTTGCTTCCGATGAAA-GGAGGCTCAGGCGCGGGCAGTCTTCATCGCGCTAAACGGG
 
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rJMSF053K17-          AGGGGTGTGATTCTTCTTACTTCCGATG                                
JMSF053K17+           AGGTGTGTGATTCTTCTTACTTCCGATGAAAGGATGCTCA                    
JMSF026I13+           AGGTGTGTGATTCTTCTTACTTCCGATGAAAGGATGCTCA                    
JMSF005O06+           AGGTGTGTGATTCTTCTTGCTTCCGATGAAAGGAGGCTCAAGCGCGAGCAGTCTTCATCC
                      ____________________________________________________________
consensus             AGGTGTGTGATTCTTCTTACTTCCGATGAAAGGATGCTCAAGCGCGAGCAGTCTTCATCC