Contig 004951:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001H09Sequence488004951 (4)ref|XP_011037022.1|3e-39PREDICTED: UBX domain-containing protein 4-like isoform X1 [Populus euphratica]
JMSF005L11Sequence337004951 (4)emb|CDP16563.1|1e-18unnamed protein product [Coffea canephora]
JMSF025B09Sequence706004951 (4)ref|XP_009762765.1|3e-68PREDICTED: UBX domain-containing protein 4 isoform X2 [Nicotiana sylvestris]725001369 (3)ref|XP_009589547.1|8e-39PREDICTED: UBX domain-containing protein 4 isoform X1 [Nicotiana tomentosiformi
JMSF027H11Sequence602004951 (4)emb|CDP16563.1|2e-29unnamed protein product [Coffea canephora]779001369 (3)ref|XP_009589547.1|6e-49PREDICTED: UBX domain-containing protein 4 isoform X1 [Nicotiana tomentosiformi

Alignment

This contig is upended


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JMSF025B09+                        TGAGAGTCCATAGATGGTCTAGCCTCAAGAGACTCTGCTTCCTTCAC
                      ____________________________________________________________
consensus                          TGAGAGTCCATAGATGGTCTAGCCTCAAGAGACTCTGCTTCCTTCAC
 
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JMSF025B09+           TTTGGTCTGAGAGTCCATAGATGGTCCAGGCACAACCGCCTCTGCTTCTATTTCTGATGA
                      ____________________________________________________________
consensus             TTTGGTCTGAGAGTCCATAGATGGTCCAGGCACAACCGCCTCTGCTTCTATTTCTGATGA
 
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JMSF025B09+           AGGTGGTGGTGGAACATTTTCCCTCGATGAACTGCCCTGCTCAGGTGAGGCAGAATTCAA
                      ____________________________________________________________
consensus             AGGTGGTGGTGGAACATTTTCCCTCGATGAACTGCCCTGCTCAGGTGAGGCAGAATTCAA
 
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JMSF025B09+           AGTTCCAGGAGATGATTCAGCCTTAGAGGCAAGTGCAGCAGTCAACAGTGTCTCCTGAAT
                      ____________________________________________________________
consensus             AGTTCCAGGAGATGATTCAGCCTTAGAGGCAAGTGCAGCAGTCAACAGTGTCTCCTGAAT
 
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JMSF025B09+           ATGAAGACTTAGCCATGCCTTTTCTAAGCTGGATGCTAGAACGTCTGCAGCAACAAAGCC
                      ____________________________________________________________
consensus             ATGAAGACTTAGCCATGCCTTTTCTAAGCTGGATGCTAGAACGTCTGCAGCAACAAAGCC
 
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JMSF025B09+           CTCATGTTGCCATAGTTGTACGCCATTGTATCCAATAGCAGTTATACATGGGGCAGCTTT
                      ____________________________________________________________
consensus             CTCATGTTGCCATAGTTGTACGCCATTGTATCCAATAGCAGTTATACATGGGGCAGCTTT
 
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JMSF025B09+           CTGTGGATACAATGCTGAGAAATTTATTGCATCACTACTTCCTTCCACAATGTGCAACAA
JMSF001H09+                   ACAATGCTGAGAAATTTATTGCATCACTACTTCCTTCCACAATGTGCAACAA
JMSF027H11+                   ACAATGCTGAGAAATTTATTGCATCACTACTTCCTTCCACAATGTGCAACAA
                      ____________________________________________________________
consensus             CTGTGGATACAATGCTGAGAAATTTATTGCATCACTACTTCCTTCCACAATGTGCAACAA
 
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JMSF025B09+           AATGCAATACTTAGATAAAGACCCTGCCACTTGTGAGTCCAACCATGTAGAGGTTTCCAA
JMSF001H09+           AATGCAATACTTAGATAAAGACCCTGCCACTTGTGAGTCCAACCATGTAGAGGTTTCCAA
JMSF027H11+           AATGCAATACTTAGATAAAGACCCTGCCACTTGTGAGTCCAACCATGTAGAGGTTTCCAA
JMSF005L11+                          TAAAGACCCTGCCACTTGTGAGTCCAACCATGTAGAGGTTTCCAA
                      ____________________________________________________________
consensus             AATGCAATACTTAGATAAAGACCCTGCCACTTGTGAGTCCAACCATGTAGAGGTTTCCAA
 
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JMSF025B09+           ATTATTAGATTCTGAGTTATCACCTGAGATGTAAACTACAAAAAGTTTCTTCTGCTGTTT
JMSF001H09+           ATTATTAGATTCTGAGTTATCACCTGAGATGTAAACTACAAAAAGTTTCTTCTGCTGTTT
JMSF027H11+           ATTATTAGATTCTGAGTTATCACCTGAGATGTAAACTACAAAAAGTTTCTTCTGCTGTTT
JMSF005L11+           ATTATTAGATTCTGAGTTATCACCTGAGATGTAAACTACAAAAAGTTTCTTCTGCTGTTT
                      ____________________________________________________________
consensus             ATTATTAGATTCTGAGTTATCACCTGAGATGTAAACTACAAAAAGTTTCTTCTGCTGTTT
 
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JMSF025B09+           GGCTTCAGTAATTGCTTCACCAATAGACCCCTTGAATGCAAGAGATGACAGAGACTGCTC
JMSF001H09+           GGCTTCAGTAATTGCTTCACCAATAGACCCCTTGAATGCAAGAGATGACAGAGACTGCTC
JMSF027H11+           GGCTTCAGTAATTGCTTCACCAATAGACCCCTTGAATGCAAGAGATGACAGAGACTGCTC
JMSF005L11+           GGCTTCAGTAATTGCTTCACCAATAGACCCCTTGAATGCAAGAGATGACAGAGACTGCTC
                      ____________________________________________________________
consensus             GGCTTCAGTAATTGCTTCACCAATAGACCCCTTGAATGCAAGAGATGACAGAGACTGCTC
 
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JMSF025B09+           CATCTAAATCAGGTATGTAACAACAATACCTCTAATTGTAGTCAACAGCCCTCTTTACCT
JMSF001H09+           CATCTAAATCAGGTATGTAACAACAATACCTCTAATTGTAGTCAACAGCCCTCTTTACCT
JMSF027H11+           CATCTAAATCAGGTATGTAACAACAATACCTCTAATTGTAGTCAACAGCCCTCTTTACCT
JMSF005L11+           CATCTAAATCAGGTATGTAACAACAATACCTCTAATTGTAGTCAACAGC--------CCT
                      ____________________________________________________________
consensus             CATCTAAATCAGGTATGTAACAACAATACCTCTAATTGTAGTCAACAGCCCTCTTTACCT
 
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JMSF025B09+           ATTCCTCCTCCTCGGAGTGGGTTTCCGTCTCTGATGTCTCTCAGCTTCCTTCCAGTTC  
JMSF001H09+           ATTCCTCCTCCTCGGAGTGGGTTTCCGTCTCTGATGTCTCTCAGCTTCCTTCCAGTTCGA
JMSF027H11+           ATTCCTCCTCCTCGGAGTGGGTTTCCGTCTCTGATGTCTCTCAGCTTCCTTCCAGTTCGA
JMSF005L11+           ATTCCTCCTCCTCGGAGTGGGTTTCCGTCTCTGATGTCTCTCAGCTTCCTTCCAGTTCGA
                      ____________________________________________________________
consensus             ATTCCTCCTCCTCGGAGTGGGTTTCCGTCTCTGATGTCTCTCAGCTTCCTTCCAGTTCGA
 
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JMSF001H09+           GACGACACCTAT                                                
JMSF027H11+           GACGACACCTAT                                                
JMSF005L11+           GACGACACCTATTCGTTTTCCCCTTTTTCCTCACTAGGCGGTTTTGGCCTGTTGGTGTCC
                      ____________________________________________________________
consensus             GACGACACCTATTCGTTTTCCCCTTTTTCCTCACTAGGCGGTTTTGGCCTGTTGGTGTCC