Contig 004949:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005J08Sequence319004949 (3)345022441
JMSF025C14Sequence678004949 (3)ref|XP_009789225.1|4e-26PREDICTED: AMSH-like ubiquitin thioesterase 2 isoform X5 [Nicotiana sylvestris]716004949 (3)ref|XP_009789192.1|2e-96PREDICTED: AMSH-like ubiquitin thioesterase 2 isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF025C14-              TGATGTTCTCTAGCCCCAAAATGGGTCAAATCATGTCAGTCAATTATTTTGAGGGC
                      ____________________________________________________________
consensus                 TGATGTTCTCTAGCCCCAAAATGGGTCAAATCATGTCAGTCAATTATTTTGAGGGC
 
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rJMSF025C14-          ATGACACCTCTACATCTGAAAAAAGCTACACTACGTAGTACGTACACATATTATTGCTTC
                      ____________________________________________________________
consensus             ATGACACCTCTACATCTGAAAAAAGCTACACTACGTAGTACGTACACATATTATTGCTTC
 
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rJMSF025C14-          ATCTTAGGTCACATATCTCGAGCCGAAGATTTTGATTAACATAGACATTGGAGCAGTCCT
                      ____________________________________________________________
consensus             ATCTTAGGTCACATATCTCGAGCCGAAGATTTTGATTAACATAGACATTGGAGCAGTCCT
 
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rJMSF025C14-          CGTAAATGGAGCTTCCGTCAGCTGGTTCTCTATGAGGATGGAACCCTTTCTCCGAGCAAT
                      ____________________________________________________________
consensus             CGTAAATGGAGCTTCCGTCAGCTGGTTCTCTATGAGGATGGAACCCTTTCTCCGAGCAAT
 
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rJMSF025C14-          CCTTGAGGATTCTCATCCCACCGTTTGATAATCTGAATATTCCATAATCCCTTGATTTGT
                      ____________________________________________________________
consensus             CCTTGAGGATTCTCATCCCACCGTTTGATAATCTGAATATTCCATAATCCCTTGATTTGT
 
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rJMSF025C14-          CAGTTGGTGCCATGACAATGCCGACAGCCTCTGGGACCATTACCTGATATGAATATTGAG
                      ____________________________________________________________
consensus             CAGTTGGTGCCATGACAATGCCGACAGCCTCTGGGACCATTACCTGATATGAATATTGAG
 
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rJMSF025C14-          TGTGCAAATCAATTGATGACATGAAACAACTCTGAGACGGATGTGTATGAATCCATCCAA
                      ____________________________________________________________
consensus             TGTGCAAATCAATTGATGACATGAAACAACTCTGAGACGGATGTGTATGAATCCATCCAA
 
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rJMSF025C14-          TTGGGAAAAGGCCCTGTTGGTTTTGTATGGAAAATATCTCCTCCTCATGTAAAGCTTGGC
JMSF025C14+                                                     CCTCATGTAAAGCTTGGC
                      ____________________________________________________________
consensus             TTGGGAAAAGGCCCTGTTGGTTTTGTATGGAAAATATCTCCTCCTCATGTAAAGCTTGGC
 
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rJMSF025C14-          AAGAATTGGATTCTGATTCTTGCTTTGGTATTATCAGAGTGGTCACATAGAAGGTTCCTT
JMSF025C14+           AAGAATTGGATTCTGATTCTTGCTTTGGTATTATCAGAGTGGTCACATAGAAGGTTCCTT
                      ____________________________________________________________
consensus             AAGAATTGGATTCTGATTCTTGCTTTGGTATTATCAGAGTGGTCACATAGAAGGTTCCTT
 
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rJMSF025C14-          TTTTCAAAGAGGCACCAAGAACTCCACAGGTCTCTAAATCCTTGCTGGTGTTACCACTGG
JMSF025C14+           TTTTCAAAGAGGCACCAAGAACTCCACAGGTCTCTAAATCCTTGCTGGTGTTACCACTGG
                      ____________________________________________________________
consensus             TTTTCAAAGAGGCACCAAGAACTCCACAGGTCTCTAAATCCTTGCTGGTGTTACCACTGG
 
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rJMSF025C14-          CAAGGTCGAGAAACATATCCATCAACCGTGTTGGCTAAGAAAAACCAAAATGCAACATTA
JMSF025C14+           CAAGGTCGAGAAACATATCCATCAACCGTGTTGGCTAAGAAAAACCAAAATGCAACATTA
                      ____________________________________________________________
consensus             CAAGGTCGAGAAACATATCCATCAACCGTGTTGGCTAAGAAAAACCAAAATGCAACATTA
 
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rJMSF025C14-          CAATGCATTTCATTGTTATATGTGATTGAAGGCACACTGGTATTTTACTGCAATGGAGAA
JMSF025C14+           CAATGCATTTCATTGTTATATGTGATTGAAGGCACACTGGTATTTTACTGCAATGGAGAA
                      ____________________________________________________________
consensus             CAATGCATTTCATTGTTATATGTGATTGAAGGCACACTGGTATTTTACTGCAATGGAGAA
 
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JMSF025C14+           GAGAACCGCTAATACAAATAACTGCAAACAAGTCTAGTCTAGTTATAATTACATACTAAA
                      ____________________________________________________________
consensus             GAGAACCGCTAATACAAATAACTGCAAACAAGTCTAGTCTAGTTATAATTACATACTAAA
 
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JMSF025C14+           TGCACATCTTTCAGAGCTTTAGATGCTTCCTGTTCATTGCCCGAGGAAGTTGAAGGACTA
JMSF005J08+                                                    CGAGGAAGTTGAAGGACTA
                      ____________________________________________________________
consensus             TGCACATCTTTCAGAGCTTTAGATGCTTCCTGTTCATTGCCCGAGGAAGTTGAAGGACTA
 
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JMSF025C14+           GCAGATGAACCCGTGTCTGAGTGTAGCAAGGGTTCAGCTCCATACGGTAAAGTGTGCACA
JMSF005J08+           GCAGATGAACCCGTGTCTGAGTGTAGCAAGGGTTCAGCTCCATACGGTAAAGTGTGCACA
                      ____________________________________________________________
consensus             GCAGATGAACCCGTGTCTGAGTGTAGCAAGGGTTCAGCTCCATACGGTAAAGTGTGCACA
 
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JMSF025C14+           AGGGAGATTACAGGAGATGGCGACGATTGTGTAACTGTTTTTACATCAAATTGGTGATGA
JMSF005J08+           AGGGAGATTACAGGAGATGGCGACGATTGTGTAACTGTTTTTACATCAAATTGGTGATGA
                      ____________________________________________________________
consensus             AGGGAGATTACAGGAGATGGCGACGATTGTGTAACTGTTTTTACATCAAATTGGTGATGA
 
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JMSF025C14+           CACACCCCATAAGCCATTAAGTTAATGGAAAAAAGGATTTAGGTTCGGATGCCACTATGC
JMSF005J08+           CACACCCCATAAGCCATTAAGTTAATGGAAAAAAGGATTTAGGTTCGGATGCCACTATGC
                      ____________________________________________________________
consensus             CACACCCCATAAGCCATTAAGTTAATGGAAAAAAGGATTTAGGTTCGGATGCCACTATGC
 
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JMSF025C14+           CAGAACTTCCAAACGAGGTTGTGTAGCCTTTTGTTGTATGGTTACGCTGAAGTCTAGAAA
JMSF005J08+           CAGAACTTCCAAACGAGGTTGTGTAGCCTTTTGTTGTATGGTTACGCTGAAGTCTAGAAA
                      ____________________________________________________________
consensus             CAGAACTTCCAAACGAGGTTGTGTAGCCTTTTGTTGTATGGTTACGCTGAAGTCTAGAAA
 
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JMSF025C14+           TCTGGCTCCGGCTATGGAGGGGCAATTCTCTTATTCTCCGCTCTCTGGATTTTCCCCT  
JMSF005J08+           TCTGGCTCCGGCTATGGAGGGGCAATTCTCTTATTCTCCGCTCTCTGGATTTTCCCCTTC
                      ____________________________________________________________
consensus             TCTGGCTCCGGCTATGGAGGGGCAATTCTCTTATTCTCCGCTCTCTGGATTTTCCCCTTC