| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF005B14 | Sequence | 252 | 004946 (3) | ref|XP_007023315.1| | 3e-06 | Leucine-rich repeat family protein isoform 2, partial [Theobroma cacao] gb|EOY2 | 340 | 009930 (3) | ref|XP_009611338.1| | 5e-05 | PREDICTED: F-box/LRR-repeat protein 13 isoform X1 [Nicotiana tomentosiformis] r |
| JMSF015H06 | Sequence | 552 | 004946 (3) | ref|XP_004235905.1| | 9e-52 | PREDICTED: putative adenylate cyclase regulatory protein [Solanum lycopersicum] | 739 | 009930 (3) | ref|XP_009796749.1| | 1e-33 | PREDICTED: F-box/LRR-repeat protein 14 isoform X2 [Nicotiana sylvestris] |
| JMSF043C20 | Sequence | 816 | 004946 (3) | ref|XP_009611340.1| | 1e-93 | PREDICTED: F-box/LRR-repeat protein 13 isoform X2 [Nicotiana tomentosiformis] | 838 | 009930 (3) | ref|XP_009796749.1| | 5e-46 | PREDICTED: F-box/LRR-repeat protein 14 isoform X2 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF043C20+ TTAGGGCATCTCTCCAGGTCCNATTTCACCAAATTGAT
____________________________________________________________
consensus TTAGGGCATCTCTCCAGGTCCNATTTCACCAAATTGAT
. : . : . : . : . : . :
JMSF043C20+ TAAGCCAGATAGAGCATCCATTCCCTGAGCTGTAATCATGGTGTTTCTTCTAAAACTTAG
____________________________________________________________
consensus TAAGCCAGATAGAGCATCCATTCCCTGAGCTGTAATCATGGTGTTTCTTCTAAAACTTAG
. : . : . : . : . : . :
JMSF043C20+ ACTCGTCAAGTTTGAAAAACCACTAACATGCTCCAGTCCATGGTCTGTAATTTGGTCACA
____________________________________________________________
consensus ACTCGTCAAGTTTGAAAAACCACTAACATGCTCCAGTCCATGGTCTGTAATTTGGTCACA
. : . : . : . : . : . :
JMSF043C20+ ATAGTTAAAATTTAGTGCTTGCAGATTTTTGCAATCTTTTAGCTGCACTATTCCAGAATC
____________________________________________________________
consensus ATAGTTAAAATTTAGTGCTTGCAGATTTTTGCAATCTTTTAGCTGCACTATTCCAGAATC
. : . : . : . : . : . :
JMSF043C20+ AGTGATATCGGAAGCAGAAAGATCCACGGATAGCAGGGAAGAACCCTGTGAAGAGATTAC
JMSF015H06+ TGAAGAGATTAC
____________________________________________________________
consensus AGTGATATCGGAAGCAGAAAGATCCACGGATAGCAGGGAAGAACCCTGTGAAGAGATTAC
. : . : . : . : . : . :
JMSF043C20+ ATCCATCCAAGTATCATCAAGGCAAGGATATTCTCCCAAATTAAGATCCTGAAGAGCACA
JMSF015H06+ ATCCATCCAAGTATCATCAAGGCAAGGATATTCTCCCAAATTAAGATCCTGAAGAGCACA
____________________________________________________________
consensus ATCCATCCAAGTATCATCAAGGCAAGGATATTCTCCCAAATTAAGATCCTGAAGAGCACA
. : . : . : . : . : . :
JMSF043C20+ ATCTCGAAATGCTTCAAGAATGACTTTAGTAAGACGTTGTGAACAAACCAATTCATCAAA
JMSF015H06+ ATCTCGAAATGCTTCAAGAATGACTTTAGTAAGACGTTGTGAACAAACCAATTCATCAAA
____________________________________________________________
consensus ATCTCGAAATGCTTCAAGAATGACTTTAGTAAGACGTTGTGAACAAACCAATTCATCAAA
. : . : . : . : . : . :
JMSF043C20+ GATTTGTTGACTTATGTCCCTTGGCAGCATAGAGAAGGTGCTATATTTGTCAATGTCTTG
JMSF015H06+ GATTTGTTGACTTATGTCCCTTGGCAGCATAGAGAAGGTGCTATATTTGTCAATGTCTTG
____________________________________________________________
consensus GATTTGTTGACTTATGTCCCTTGGCAGCATAGAGAAGGTGCTATATTTGTCAATGTCTTG
. : . : . : . : . : . :
JMSF043C20+ ACAAATTTGATAGATGCACAATTCCATGAGAGAAGGGCAATTTCCATTTCCATGCCTAGG
JMSF015H06+ ACAAATTTGATAGATGCACAATTCCATGAGAGAAGGGCAATTTCCATTTCCATGCCTAGG
____________________________________________________________
consensus ACAAATTTGATAGATGCACAATTCCATGAGAGAAGGGCAATTTCCATTTCCATGCCTAGG
. : . : . : . : . : . :
JMSF043C20+ ATCTATAGATGACCGCGAAAGTGAACTTCCTAGCCATTTTGAACTACCACTCTTGCAATA
JMSF015H06+ ATCTATAGATGACCGCGAAAGTGAACTTCCTAGCCATTTTGAACTACCACTCTTGCAATA
JMSF005B14+ ACTCTTGCAATA
____________________________________________________________
consensus ATCTATAGATGACCGCGAAAGTGAACTTCCTAGCCATTTTGAACTACCACTCTTGCAATA
. : . : . : . : . : . :
JMSF043C20+ TCGTCCTGAAACTCCTCTATGTATGCTGTCATCCTCAGCCAGTTGGTCTCGCTTTCTAGA
JMSF015H06+ TCGTCCTGAAACTCCTCTATGTATGCTGTCATCCTCAGCCAGTTGGTCTCGCTTTCTAGA
JMSF005B14+ TCGTCCTGAAACTCCTCTATGTATGCTGTCATCCTCAGCCAGTTGGTCTCGCTTTCTAGA
____________________________________________________________
consensus TCGTCCTGAAACTCCTCTATGTATGCTGTCATCCTCAGCCAGTTGGTCTCGCTTTCTAGA
. : . : . : . : . : . :
JMSF043C20+ ACAAACTCCCCCCATCTGAGACACTGTTGTTGATTCACATTTGCAGATCACAGGTGGAAT
JMSF015H06+ ACAAACTCCCCCCATCTGAGACACTGTTGTTGATTCACATTTGCAGATCACAGGTGGAAT
JMSF005B14+ ACAAACTCCCCCCATCTGAGACACTGTTGTTGATTCACATTTGCAGATCACAGGTGGAAT
____________________________________________________________
consensus ACAAACTCCCCCCATCTGAGACACTGTTGTTGATTCACATTTGCAGATCACAGGTGGAAT
. : . : . : . : . : . :
JMSF043C20+ AGTACATTTGGCTGTTAAATTTTTAAGGCAGACATTCTACAGAGC
JMSF015H06+ AGTACACTTGGCTGTTAAATTTTTAAGGCAGACATTCTACAGAGC
JMSF005B14+ AGTACATTTGGCTGTTAAATTTTTAAGGCAGACATTCTACAGAGCCTTCAACTCTGGAAA
____________________________________________________________
consensus AGTACATTTGGCTGTTAAATTTTTAAGGCAGACATTCTACAGAGCCTTCAACTCTGGAAA
. : . : . : . : . : . :
JMSF005B14+ ACTGAACGATCAATTTGTTTAAAGTCTGGAGAGAGAGAGAGGGAGAAGTGGAAAGTTTCC
____________________________________________________________
consensus ACTGAACGATCAATTTGTTTAAAGTCTGGAGAGAGAGAGAGGGAGAAGTGGAAAGTTTCC