Contig 004943:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN016N24Sequence622004943 (6)ref|XP_009593067.1|204PREDICTED: uncharacterized protein LOC104089792 [Nicotiana tomentosiformis] ref|
JMFN018A10Sequence588004943 (6)ref|XP_009593067.1|204PREDICTED: uncharacterized protein LOC104089792 [Nicotiana tomentosiformis] ref|
JMFN019J02Sequence601004943 (6)ref|XP_009593067.1|202PREDICTED: uncharacterized protein LOC104089792 [Nicotiana tomentosiformis] ref|
JMSF004M14Sequence383010560 (3)322004943 (6)
JMSF004O16Sequence199004943 (6)251004943 (6)

Alignment

This contig is upended


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JMFN016N24+                                                   CCATTGAGATACATTTTGTC
                      ____________________________________________________________
consensus                                                     CCATTGAGATACATTTTGTC
 
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rJMSF004M14-                   AAGAACCTACCTTGCTATTGGCCAAAAACTACAATTATGCTCAAAAGTTCA
rJMSF004O16-                   AAGAACCTACCTTGCTATTGGCCAAAAACTACAATTATGCTCAAAAGTTCA
JMFN016N24+           TTGAACTTGAAGAACCTACCTTGCTATTGGCCAAAAACTACAATTATGCTCAAAAGTTCA
                      ____________________________________________________________
consensus             TTGAACTTGAAGAACCTACCTTGCTATTGGCCAAAAACTACAATTATGCTCAAAAGTTCA
 
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rJMSF004M14-          AGAGGATAGAAACTCNAAAATCCATCAATGTGAAATGTCTATCGTCTTCTCTTATTACTG
rJMSF004O16-          AGAGGATAGAAACTCTAANATCCATCAATGTGAAATGTCTATCGTCTTCTCTTATTACTG
JMFN016N24+           AGAGGATAGAAACTCTAAAATCCATCAATGTGAAATGTCTATCGTCTTCTCTTATTACTG
JMFN019J02+                              ATCCATCAATGTGAAATGTCTATCGTCTTCTCTTATTACTG
JMFN018A10+                                            AATGTCTATCGTCTTCTCTTATTACTG
                      ____________________________________________________________
consensus             AGAGGATAGAAACTCTAAAATCCATCAATGTGAAATGTCTATCGTCTTCTCTTATTACTG
 
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rJMSF004M14-          GGACCATGAAATCCACACTTCAATGGCGCTATATTGCAGCGTATTGAAATGCCAATTTCC
rJMSF004O16-          GGACCATGAAATCCACACTTCAATGGCGCTATATTGCAGCGTATTGAAATGCCAATTTCC
JMFN016N24+           GGACCATGAAATCCACACTTCAATGGCGCTATATTGCAGCGTATTGAAATGCCAATTTCC
JMFN019J02+           GGACCATGAAATCCACACTTCAATGGCGCTATATTGCAGCGTATTGAAATGCCAATTTCC
JMFN018A10+           GGACCATGAAATCCACACTTCAATGGCGCTATATTGCAGCGTATTGAAATGCCAATTTCC
                      ____________________________________________________________
consensus             GGACCATGAAATCCACACTTCAATGGCGCTATATTGCAGCGTATTGAAATGCCAATTTCC
 
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rJMSF004M14-          CTTACTCCATTGCACCTGCAAAGGGATGGCGGCATTCAGCCGTTACTGACTGGAACTGGT
rJMSF004O16-          CTTACTCCATTGCACCTGCAAAGGGATGGCGGCATTCAGCCGTTACTGACTGGAACTG  
JMFN016N24+           CTTACTCCATTGCACCTGCAAAGGGATGGCGGCATTCAGCCGTTACTGACTGGAACTGGT
JMFN019J02+           CTTACTCCATTGCACCTGCAAAGGGATGGCGGCATTCAGCCGTTACTGACTGGAACTGGT
JMFN018A10+           CTTACTCCATTGCACCTGCAAAGGGATGGCGGCATTCAGCCGTTACTGACTGGAACTGGT
                      ____________________________________________________________
consensus             CTTACTCCATTGCACCTGCAAAGGGATGGCGGCATTCAGCCGTTACTGACTGGAACTGGT
 
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rJMSF004M14-          TGCAGAAGCTGGATGGTGATTTATGACCAATGGGNGGCGCAGGGCACGGNGGTTAGCTGC
JMFN016N24+           TGCAGAAGCTGGATGGTGATTTATGACCAATGGGGGGCGCAGGGCACGGTGGTTAGCTGC
JMFN019J02+           TGCAGAAGCTGGATGGTGATTTATGACCAATGGGGAGCGCAGGGCACGGTGGTTAGCTGC
JMFN018A10+           TGCAGAAGCTGGATGGTGATTTATGACCAATGGGGGGCGCAGGGCACGGTGGTTAGCTGC
                      ____________________________________________________________
consensus             TGCAGAAGCTGGATGGTGATTTATGACCAATGGGGGGCGCAGGGCACGGTGGTTAGCTGC
 
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rJMSF004M14-          TTTCTCCTT                                                   
JMFN016N24+           TTTCTCCTTTCGTGCCTTGTACATCTCTTCTGTTTCAACAACTACCAACCGTTTCACCTG
JMFN019J02+           TTTCTCCTTTCGTGCCTTGTACATCTCTTCTGTTTCAACAACTACCAACCGTTTCACCTG
JMFN018A10+           TTTCTCCTTTCGTGCCTTGTACATCTCTTCTGTTTCAACAACTACCAACCGTTTCACCTG
                      ____________________________________________________________
consensus             TTTCTCCTTTCGTGCCTTGTACATCTCTTCTGTTTCAACAACTACCAACCGTTTCACCTG
 
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JMFN016N24+           CTGGAGCATTCCCCTGACAGTAGGGGTGTTCCAACGCATCACTGTTCGGTTGCATTTCTG
JMFN019J02+           CTGGAGCATTCCCCTGACAGTAGGGGTGTTCCACCGCATCACTGTTCGGTTGCATTTCTG
JMFN018A10+           CTGGAGCATTCCCCTGACAGTAGGGGTGTTCCACCGCATCACTGTTCGGTTGCATTTCTG
                      ____________________________________________________________
consensus             CTGGAGCATTCCCCTGACAGTAGGGGTGTTCCACCGCATCACTGTTCGGTTGCATTTCTG
 
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JMFN016N24+           AAGACGCAATGCTTCTAAGGTTCGCCTATGGAGCCTCCTAGTGCCCGGAATACCTCTTAC
JMFN019J02+           AAGACGCAATGCTTCTAAGGTTCGCCTATGGAGCCTCCTAGTGCCCGGAATACCTCTTAC
JMFN018A10+           AAGACGCAATGCTTCTAAGGTTCGCCTATGGAGCCTCCTAGTGCCCGGAATACCTCTTAC
                      ____________________________________________________________
consensus             AAGACGCAATGCTTCTAAGGTTCGCCTATGGAGCCTCCTAGTGCCCGGAATACCTCTTAC
 
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JMFN016N24+           AAGCGTAATGTACAGATTTGGGCTCCATGCAATTGGAGCACAGGCTTTGAAAGCATTGAA
JMFN019J02+           AAGCGTAATGTACAGATTTGGGCTCCATGCAATTGGAGCACAGGCTTTGAAAGCATTGAA
JMFN018A10+           AAGCGTAATGTACAGATTTGGGCTCCATGCAATTGGAGCACAGGCTTTGAAAGCATTGAA
JMSF004O16+                                                    AGGCTTTGAAAGCATTGAA
                      ____________________________________________________________
consensus             AAGCGTAATGTACAGATTTGGGCTCCATGCAATTGGAGCACAGGCTTTGAAAGCATTGAA
 
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JMFN016N24+           AGCACTCATATCCTTCTTTACTGCTACCTGGAGTACAATTGATACCTTTTGTCAAAGCTT
JMFN019J02+           AGCACTCATATCCTTCTTTACTGCTACCTGGAGTACAATTGATACCTTTTGTCAAAGCTT
JMFN018A10+           AGCACTCATATCCTTCTTTACTGCTACCTGGAGTACAATTGATACCTTTTGTCAAAGCTT
JMSF004O16+           AGCACTCATATCCTTCTTTACTGCTACCTGGAGTACAATTGATACCTTTTGTCAAAGCTT
                      ____________________________________________________________
consensus             AGCACTCATATCCTTCTTTACTGCTACCTGGAGTACAATTGATACCTTTTGTCAAAGCTT
 
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JMFN016N24+           TA                                                          
JMFN019J02+           TACTTCAAAACAGAAGCTAGCGTTCACTGACCGGAGTGTCGCCGAGGGCGGCGCAGAGGC
JMFN018A10+           TACTTCAAAACAGAAGCTAGCGTTCACTGACCGGAGTGTCGCCGAGGGCGGCGCAGAGGC
JMSF004O16+           TACTTCAAAACAGAAGCTAGCGTTCACTGACCGGAGTGTCGCCGAGGGCGGCGCAGAGGC
                      ____________________________________________________________
consensus             TACTTCAAAACAGAAGCTAGCGTTCACTGACCGGAGTGTCGCCGAGGGCGGCGCAGAGGC
 
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JMFN019J02+           GGTGAGAGACGATGGAGAA                                         
JMFN018A10+           GGTGAGAGACGATGGAGAA                                         
JMSF004O16+           GGTGAGAGACGATGGAGAAGTGGAGAACGGAATAAGGGATTAGGGATTAGGTCTATATCC
                      ____________________________________________________________
consensus             GGTGAGAGACGATGGAGAAGTGGAGAACGGAATAAGGGATTAGGGATTAGGTCTATATCC