Contig 004942:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN043I08Sequence627004942 (2)ref|XP_011087772.1|6e-71PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic isoform X
JMSF004M08Sequence241004942 (2)499013056 (5)ref|XP_007039159.1|2e-76Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi

Alignment

This contig is upended


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JMFN043I08+                              TGCTTGCATTTACTGGTGTTAAATCTGCTGTCACCTGATTG
                      ____________________________________________________________
consensus                                TGCTTGCATTTACTGGTGTTAAATCTGCTGTCACCTGATTG
 
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JMFN043I08+           AAAGTTGGCCAAGATTCCAAATTCTGGGCTCGAAGTGTATCAGCATTGATTCCTTGGTAG
                      ____________________________________________________________
consensus             AAAGTTGGCCAAGATTCCAAATTCTGGGCTCGAAGTGTATCAGCATTGATTCCTTGGTAG
 
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JMFN043I08+           TTTGTTCTTGATCTTAAGAACTTTGGCCTATTCGTTTGGAGAATCGATTGTGAAGTTGTG
                      ____________________________________________________________
consensus             TTTGTTCTTGATCTTAAGAACTTTGGCCTATTCGTTTGGAGAATCGATTGTGAAGTTGTG
 
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JMFN043I08+           TATATAAGTTCCCATTTGCCATTTAGGAAAGGAGACTTCAGTGGCTCCTTTGTCGGATTG
                      ____________________________________________________________
consensus             TATATAAGTTCCCATTTGCCATTTAGGAAAGGAGACTTCAGTGGCTCCTTTGTCGGATTG
 
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JMFN043I08+           GCTGCTTCCAGCTTCCGAACAATTTGCTCAATCTTTTCTTGATCTTCAGGAGTGGCATCC
                      ____________________________________________________________
consensus             GCTGCTTCCAGCTTCCGAACAATTTGCTCAATCTTTTCTTGATCTTCAGGAGTGGCATCC
 
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JMFN043I08+           GCGCCACGATCAAGTGGCGCAAGAGCTTCAAAGAGTTCTTCTTTGATGGGCTCTGGGTCT
                      ____________________________________________________________
consensus             GCGCCACGATCAAGTGGCGCAAGAGCTTCAAAGAGTTCTTCTTTGATGGGCTCTGGGTCT
 
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JMFN043I08+           TTGGTTTTGTTCAAGTTCAAGAAGCCTGGGAAGAACGAAACACTGGCTCTCCATTTGCAA
JMSF004M08+                                                                      A
                      ____________________________________________________________
consensus             TTGGTTTTGTTCAAGTTCAAGAAGCCTGGGAAGAACGAAACACTGGCTCTCCATTTGCAA
 
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JMFN043I08+           GGGGCGGAAATGCTGGCAAGCCCACTGCTACTATGGCCGTTGTGGGTGGCGGGGAAAGAG
JMSF004M08+           GGGGCGGAAATGCTGGCAAGCCCACTGCTACTATGGCCGTTGTGGGTGGCGGGGAAAGAG
                      ____________________________________________________________
consensus             GGGGCGGAAATGCTGGCAAGCCCACTGCTACTATGGCCGTTGTGGGTGGCGGGGAAAGAG
 
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JMFN043I08+           AAGGCGGCGGCGGAGAGAGAGTGAGTGTGGAGGAGCTTTGGGTGGTTGTGGGCGGAGGAG
JMSF004M08+           AAGGCGGCGGCGGAGAGAGAGTGAGTGTGGAGGAGCTTTGGGTGGTTGTGGGCGGAGGAG
                      ____________________________________________________________
consensus             AAGGCGGCGGCGGAGAGAGAGTGAGTGTGGAGGAGCTTTGGGTGGTTGTGGGCGGAGGAG
 
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JMFN043I08+           TGAGCAGCGATGAGCTGCGTCGCCGGAGCTGAAAGTGTAGAAAATGCCATGGGGCCGGAA
JMSF004M08+           TGAGCAGCGATGAGCTGCGTCGCCGGAGCTGAAAGTGTAGAAAATGCCATGGGGCCGGAA
                      ____________________________________________________________
consensus             TGAGCAGCGATGAGCTGCGTCGCCGGAGCTGAAAGTGTAGAAAATGCCATGGGGCCGGAA
 
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JMFN043I08+           GTATATGAATAATGAAGAAAGTGGAGGTTTAGTGGGCGGTGAGATT              
JMSF004M08+           GTATATGAATAATGAAGAAAGTGGAGGTTTAGTGGGCGGTGAGATTTGTATTTTGTGGTC
                      ____________________________________________________________
consensus             GTATATGAATAATGAAGAAAGTGGAGGTTTAGTGGGCGGTGAGATTTGTATTTTGTGGTC