Contig 004941:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045D17Sequence647004941 (5)ref|XP_009610243.1|1e-89PREDICTED: protein farnesyltransferase subunit beta isoform X3 [Nicotiana tomen605001203 (5)gb|AAB38796.1|8e-44farnesyltransferase beta subunit, partial [Nicotiana glutinosa]
JMFF045N15Sequence647004941 (5)ref|XP_009610243.1|3e-85PREDICTED: protein farnesyltransferase subunit beta isoform X3 [Nicotiana tomen578001203 (5)gb|AAB38796.1|1e-43farnesyltransferase beta subunit, partial [Nicotiana glutinosa]
JMSF001H10Sequence481004941 (5)ref|XP_009610243.1|1e-57PREDICTED: protein farnesyltransferase subunit beta isoform X3 [Nicotiana tomen683001203 (5)ref|XP_010315876.1|1e-49PREDICTED: farnesyl protein transferase subunit B isoform X2 [Solanum lycopersi
JMSF004L07Sequence385004941 (5)emb|CDI30234.1|2e-35protein farnesyltransferase beta-subunit [Nicotiana tabacum]381001203 (5)gb|AAB38796.1|2e-38farnesyltransferase beta subunit, partial [Nicotiana glutinosa]
JMSF033A16Sequence606004941 (5)ref|XP_009610243.1|7e-54PREDICTED: protein farnesyltransferase subunit beta isoform X3 [Nicotiana tomen701001203 (5)gb|AAB69757.1|9e-66farnesyl-protein transferase beta subunit [Solanum lycopersicum]

Alignment

This contig is upended


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JMFF045D17+                         TCAAGAATGTTCAGGATGCTTGCAACTGAAATGGCAGTATAGCACG
JMFF045N15+                         TCAAGAATGTTCAGGATGCTTGCAACTGAAATGGCAGTATAGCACG
                      ____________________________________________________________
consensus                           TCAAGAATGTTCAGGATGCTTGCAACTGAAATGGCAGTATAGCACG
 
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JMFF045D17+           CACGAACATCCACTTCCCCACCATCGTGCATCCTGAAGCCGCCATTTGCTTCTTTCATTC
JMFF045N15+           CACGAACATCCACTTCCCCACCATCGTGCATCCTGAAGCCGCCATTTGCTTCTTTCATTC
JMSF033A16+                                                                TTCATTC
                      ____________________________________________________________
consensus             CACGAACATCCACTTCCCCACCATCGTGCATCCTGAAGCCGCCATTTGCTTCTTTCATTC
 
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JMFF045D17+           GCAGCAAAAAGGAGTATAATTTATCTCTCTTAATTGATGAGAAAGATTTTTGACCTCCCA
JMFF045N15+           GCAGCAAAAAGGAGTATAATTTATCTCTCTTAATTGATGAGAAAGATTTTTGACCTCCCA
JMSF033A16+           GCAGCAAAAAGGAGTATAATTTATCTCTCTTAATTGATGAGAAAGATTTTTGACCTCCCA
                      ____________________________________________________________
consensus             GCAGCAAAAAGGAGTATAATTTATCTCTCTTAATTGATGAGAAAGATTTTTGACCTCCCA
 
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JMFF045D17+           AAGTTATGAGTGCATTAACTGCAGCATAGGTTGTTGCAAGATGTGGCATCTGACCAGGTC
JMFF045N15+           AAGTTATGAGTGCATTAACTGCAGCATAGGTTGTTGCAAGATGTGGCATCTGACCAGGTC
JMSF001H10+                          TAACTGCAGCATAGGTTGTTGCAAGATGTGGCATCTGACCAGGTC
JMSF033A16+           AAGTTATGAGTGCA-TAACTGCAGCATAGGTTGTTGCAAGATGTGGCATCTGACCAGGTC
                      ____________________________________________________________
consensus             AAGTTATGAGTGCATTAACTGCAGCATAGGTTGTTGCAAGATGTGGCATCTGACCAGGTC
 
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JMFF045D17+           CACCGCCATATCCACCATTTGGATCCTGGCAGCGACTGAGAAAATCAANGGCGTCGTCTT
JMFF045N15+           CACCGCCATATCCACCATTTGGATCCTGGCAGCGACTGAGAAAATCAATGGCGTCGTCTT
JMSF001H10+           CACCGCCATATCCACCATTTGGATCCTGGCAGCGACTGAGAAAATCAAGGGCGTCGTCTT
JMSF033A16+           CACCGCCATATCCACCATTTGGATCCTGGCAGCGACTGAGAAAATCAANGGCGTCGTCTT
                      ____________________________________________________________
consensus             CACCGCCATATCCACCATTTGGATCCTGGCAGCGACTGAGAAAATCAATGGCGTCGTCTT
 
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JMFF045D17+           TCAATTTATCGTCAATAGACTCGCCCAATAAAGCAATCGAATGGATTATCCAATAGCAAA
JMFF045N15+           TCAATTTATCGTCAATAGACTCGCCCAATAAAGCAATCGAATGGATTATCCAATAGCAAA
JMSF001H10+           TCAATTTATCGTCAATAGACTCGCCCAATAAAGCAATCGAATGGATTATCCAATAGCAAA
JMSF033A16+           TCAATTTATCGTCAATAGACTCGCCCAATAAAGCAATCGAATGGATTATCCAATAGCAAA
JMSF004L07+                                              ATCGAATGGATTATCCAATAGCAAA
                      ____________________________________________________________
consensus             TCAATTTATCGTCAATAGACTCGCCCAATAAAGCAATCGAATGGATTATCCAATAGCAAA
 
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JMFF045D17+           GCCAAGGTCGATTGGCATCGAGAACAGAAAACGATGGACCGAGGTGATGGAGTCCTCTGT
JMFF045N15+           GCCAAGGTCGATTGGCATCGAGAACAGAAAACGATGGACCGAGGTGATGGAGTCCTCTGT
JMSF001H10+           GCCAAGGTCGATTGGCATCGAGAACAGAAAACGATGGACCGAGGTGATGGAGTCCTCTGT
JMSF033A16+           GCCAAGGTCGATTGGCATCGAGAACAGAAAACGATGGACCGAGGTGATGGAGTCCTCTGT
JMSF004L07+           GCCAAGGTCGATNGGCATCGAGAACAGAAAACGATGGACCGAGGTGATGGAGTCCTCTGT
                      ____________________________________________________________
consensus             GCCAAGGTCGATTGGCATCGAGAACAGAAAACGATGGACCGAGGTGATGGAGTCCTCTGT
 
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JMFF045D17+           ATAGATACTCAACGTGCTTCTCACGTTGAAGCTCCAAGATGACGGACTGAGAGTTGGGAG
JMFF045N15+           ATAGATACTCAACGTGCTTCTCACGTTGAAGCTCCAAGATGACGGACTGAGAGTTGGGAG
JMSF001H10+           ATAGATACTCAACGTGCTTCTCACGTTGAAGCTCCAAGATGACGGACTGAGAGTTGGGAG
JMSF033A16+           ATAGATACTCAACGTGCTTCTCACGTTGAAGCTCCAAGATGACGGACTGAGAGTTGGGAG
JMSF004L07+           ATAGATACTCAACGTGCTTCTCACGTTGAAGCTCCAAGATGACGGACTGAGAGTTGGGAG
                      ____________________________________________________________
consensus             ATAGATACTCAACGTGCTTCTCACGTTGAAGCTCCAAGATGACGGACTGAGAGTTGGGAG
 
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JMFF045D17+           GGATGCTGTAGAAGAAGTTGTAAATTTCGCGGACTTGACGCTCTACCGTCCATTGTTCTT
JMFF045N15+           GGATGCTGTAGAAGAAGTTGTAAATTTCGCGGACTTGACGCTCTACCGTCCGTTGTTCTT
JMSF001H10+           GGATGCTGTAGAAGAAGTTGTAAATTTCGCGGACTTGACGCTCTACCGTCCATTGTTCTT
JMSF033A16+           GGATGCTGTAGAAGAAGTTGTAAATTTCGCGGACTTGACGCTCTACCGTCCATTGTTCTT
JMSF004L07+           GGATGCTGTAGAAGAAGTTGTAAATTTCGCGGACTTGACGCTCTACCGTCCATTGTTCTT
                      ____________________________________________________________
consensus             GGATGCTGTAGAAGAAGTTGTAAATTTCGCGGACTTGACGCTCTACCGTCCATTGTTCTT
 
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JMFF045D17+           CCTGAGTCTTCGTCCCTGTCGTAGACTCCATCGTCGCTATTCCGACCACCGGAAAAAAGC
JMFF045N15+           CCTGAGTCTTCGTCCCTGTCGTAGACTCCATCGTCGCTATTCCGACCACCGGAAAAAAGC
JMSF001H10+           CCTGAGTCTTCGTCCCTGTCGTAGACTCCATCGTCGCTATTCCGACCACCGGAAAAAAGC
JMSF033A16+           CCTGAGTCTTCGTCCCTGTCGTAGACTCCATCGTCGCTATTCCGACCACCGGAAAAAAGC
JMSF004L07+           CCTGAGTCTTCGTCCCTGTCGTAGACTCCATCGTCGCTATTCCGACCACCGGAAAAAAGC
                      ____________________________________________________________
consensus             CCTGAGTCTTCGTCCCTGTCGTAGACTCCATCGTCGCTATTCCGACCACCGGAAAAAAGC
 
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JMFF045D17+           ACTCAATCTGACCGGCGGGCGAAGACCCTGACGTTGACCTTCTATGCTTCCAGCCTTCAA
JMFF045N15+           ACTCAATCTGACCGGCGGGCGAAGACCCTGACGTTGACCTTCTATGCTTCCAGCCTTCAA
JMSF001H10+           ACTCAATCTGACCGGCGGGCGAAGACCCTGACGTTGACCTTCTATGCTTCCAGCCTTCAA
JMSF033A16+           ACTCAATCTGACCGGCGGGCGAAGACCCTGACGTTGACCTTCTATGCTTCCAGCCTTCAA
JMSF004L07+           ACTCAATCTGACCGGCGGGCGAAGACCCTGACGTTGACCTTCTATGCTTCCAGCCTTCAA
                      ____________________________________________________________
consensus             ACTCAATCTGACCGGCGGGCGAAGACCCTGACGTTGACCTTCTATGCTTCCAGCCTTCAA
 
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JMFF045D17+           C                                                           
JMFF045N15+           C                                                           
JMSF001H10+           C                                                           
JMSF033A16+           CAGTTCAACTTCGACTTCGATTCGCTTACTTGTACGGCCCGCAGGGCATATGCGTTGTCC
JMSF004L07+           CAGTTCAACTTCGACTTCGATTCGCTTACTTGTACGGCCCGCAGGGCATATGCGTTGTCC
                      ____________________________________________________________
consensus             CAGTTCAACTTCGACTTCGATTCGCTTACTTGTACGGCCCGCAGGGCATATGCGTTGTCC