Contig 004940:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS107C04Sequence623004940 (4)dbj|BAF46306.1|6e-40ataxin-2 related protein [Ipomoea nil]
JMSF004J23Sequence349004940 (4)422005835 (4)
JMSF050C05Sequence608004940 (4)dbj|BAF46306.1|2e-43ataxin-2 related protein [Ipomoea nil]738005835 (4)ref|XP_009609058.1|2e-35PREDICTED: polyadenylate-binding protein-interacting protein 4-like isoform X2
JMSF050F18Sequence729004940 (4)dbj|BAF46306.1|1e-58ataxin-2 related protein [Ipomoea nil]779005835 (4)ref|XP_009609056.1|7e-35PREDICTED: polyadenylate-binding protein-interacting protein 4-like isoform X1

Alignment

This contig is upended


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JMSF050F18+                                                  TTGCGATATGCATGAATCAGT
                      ____________________________________________________________
consensus                                                    TTGCGATATGCATGAATCAGT
 
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JMFS107C04+                                 CGCTGGTACTCATNTGTTACATCATCTGGGGTTAAATG
JMSF050F18+           CATTAACTCATGCTGCTTTTCCCGCTGGTACTCATTTGTTACATCATCTGGGGTTAAATG
                      ____________________________________________________________
consensus             CATTAACTCATGCTGCTTTTCCCGCTGGTACTCATTTGTTACATCATCTGGGGTTAAATG
 
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JMFS107C04+           CACACCCTTAGATGTAACTTGCACAAGCTCTTTAGCTGGAATTATGAATGTCCTTGATGC
JMSF050F18+           CACACCCTTAGATGTAACTTGCACAAGCTCTTTAGCTGGAATTATGAATGTCCTTGATGC
JMSF050C05+                                                   ATTATGAATGTCCTTGATGC
                      ____________________________________________________________
consensus             CACACCCTTAGATGTAACTTGCACAAGCTCTTTAGCTGGAATTATGAATGTCCTTGATGC
 
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JMFS107C04+           AGGCTTGCTAAGGGATTCAGAAGTATAGTTCTGTCCACGAGAACCATCTTTTACCAAGCG
JMSF050F18+           AGGCTTGCTAAGGGATTCAGAAGTATAGTTCTGTCCACGAGAACCATCTTTTACCAAGCG
JMSF050C05+           AGGCTTGCTAAGGGATTCAGAAGTATAGTTCTGTCCACGAGAACCATCTTTTACCAAGCG
                      ____________________________________________________________
consensus             AGGCTTGCTAAGGGATTCAGAAGTATAGTTCTGTCCACGAGAACCATCTTTTACCAAGCG
 
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JMFS107C04+           AGCCATTTTCAGAACAATATCAAAATCCTTATCCGCATTAGTTGCATGAAGTATCCCTGA
JMSF050F18+           AGCCATTTTCAGAACAATATCAAAATCCTTATCCGCATTAGTTGCATGAAGTATCCCTG-
JMSF050C05+           AGCCATTTTCAGAACAATATCAAAATCCTTATCCGCATTAGTTGCATGAAGTATCCCTG-
                      ____________________________________________________________
consensus             AGCCATTTTCAGAACAATATCAAAATCCTTATCCGCATTAGTTGCATGAAGTATCCCTG-
 
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JMFS107C04+           AAAAAACTGAACCATCCAACACCTGTACTTCCACTTGATGTCCAATAAGGCATGCAGTTA
JMSF050F18+           AAAAAACTGAACCATCCAACACCTGTACTTCCACTTGATGTCCAATAAGGCATGCAGTTA
JMSF050C05+           AAAAAACTGAACCATCCAACACCTGTACTTCCACTTGATGTCCAATAAGGCATGCAGTTA
                      ____________________________________________________________
consensus             AAAAAACTGAACCATCCAACACCTGTACTTCCACTTGATGTCCAATAAGGCATGCAGTTA
 
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JMFS107C04+           CATAAAATAGTCGATCACGTGGAGAGCTTTCAAACCCTCCCCCTTTACCTGCACTTGTCA
JMSF050F18+           CATAAAATAGTCGATCACGTGGAGAGCTTTCAAACCCTCCCCCTTTACCTGCACTTGTCA
JMSF050C05+           CATAAAATAGTCGATCACGTGGAGAGCTTTCAAACCCTCCCCCTTTACCTGCACTTGTCA
                      ____________________________________________________________
consensus             CATAAAATAGTCGATCACGTGGAGAGCTTTCAAACCCTCCCCCTTTACCTGCACTTGTCA
 
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JMFS107C04+           ACCGGATGGAATTTGCTTTTGCATTCTGCAGCTTACGACGGCCAAATCCATTGACAGAAG
JMSF050F18+           ACCGGATGGAATTTGCTTTTGCATTCTGCAGCTTACGACGGCCAAATCCATTGACAGAAG
JMSF050C05+           ACCGGATGGAATTNGCTTTTGCATTCTGCAGCTTACGACGGCCAAATCCATTGACAGAAG
JMSF004J23+                            TTTGCATTNTGCAGCTTACGACGGCCAAATCCATTGACAGAAG
                      ____________________________________________________________
consensus             ACCGGATGGAATTTGCTTTTGCATTCTGCAGCTTACGACGGCCAAATCCATTGACAGAAG
 
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JMFS107C04+           ATTTGGTCTGCACAGCTTGCTGCATATTCATCCTCAAAAGATGATGGATAATATGATCGA
JMSF050F18+           ATTTGGTCTGCACAGCTTGCTGCATATTCATCCTCAAAAGATGATGGATAATATGATCGA
JMSF050C05+           ATTTGGTCTGCACAGCNTGCTGCATATTCATCCTCAAAAGATGATGGATAATATGATCGA
JMSF004J23+           ATTTGGTCTGCACAGCTTGCTGCATATTCATCCTCAAAAGATGATGGATAATATGATCGA
                      ____________________________________________________________
consensus             ATTTGGTCTGCACAGCTTGCTGCATATTCATCCTCAAAAGATGATGGATAATATGATCGA
 
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JMFS107C04+           CAGGAGATTCAACTAAGATTTAGCTAGTAACTTGAATTGTCACTGAACAAAGTGCCTGTA
JMSF050F18+           CAGGAGATTCAACTAAGATTTAGCTAGTAACTTGAATTGTCACTGAACAAAGTGCCTGTA
JMSF050C05+           CAGGAGATTCAACTAAGATTTAGCTAGTAACTTGAATTGTCACTGAACAAAGTGCCTGTA
JMSF004J23+           CAGGAGATTCAACTAAGATTTAGCTAGTAACTTGAATTGTCACTGAACAAAGTGCCTGTA
                      ____________________________________________________________
consensus             CAGGAGATTCAACTAAGATTTAGCTAGTAACTTGAATTGTCACTGAACAAAGTGCCTGTA
 
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JMFS107C04+           CAGCTGTCCGTGAAGGTTTACAGCATGGGTATCATCACTGTGTAATGGTGGATTGGTAGA
JMSF050F18+           CAGCTGTCCGTGAAGGTTTACAGCATGGGTATCATCACTGTGTAATGGTGGATTGGTAGA
JMSF050C05+           CAGCTGTCCGTGAAGGTTTACAGCATGGGTATCATCACTGTGTAATGGTGGATTGGTAGA
JMSF004J23+           CAGCTGTCCGTGAAGGTTTACAGCATGGGTATCATCACTGTGTAATGGTGGATTGGTAGA
                      ____________________________________________________________
consensus             CAGCTGTCCGTGAAGGTTTACAGCATGGGTATCATCACTGTGTAATGGTGGATTGGTAGA
 
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JMFS107C04+           GGATGACGGAAGAGGAGAATATGCTCCGAGAGACGACACAATGGG               
JMSF050F18+           GGATGACGGAAGAGGAGAATATGCTCCGAGAGACGACACAATGGGTTTGATCGGAGAGAA
JMSF050C05+           GGATGACGGAAGAGGAGAATATGCTCCGAGAGACGACACAATGGGTTTGATCGGAGAGAA
JMSF004J23+           GGATGACGGAAGAGGAGAATATGCTCCGAGAGACGACACAATGGGTTTGATCGGAGAGAA
                      ____________________________________________________________
consensus             GGATGACGGAAGAGGAGAATATGCTCCGAGAGACGACACAATGGGTTTGATCGGAGAGAA
 
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JMSF050F18+           AACTTTGGATATGAGAATAGAAATTTTGAAGAATGGACGTCAAGTCT             
JMSF050C05+           AACTTCGGATATGAGAATAGAAATTTTGAAGAATGGACGTCAAGTCT             
JMSF004J23+           AACTTTGGATATGAGAATAGAAATTTTGAAGAATGGACGTCAAGTCTCAGCGAGTCCGTC
                      ____________________________________________________________
consensus             AACTTTGGATATGAGAATAGAAATTTTGAAGAATGGACGTCAAGTCTCAGCGAGTCCGTC