Contig 004939:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS099F02Sequence612004939 (3)
JMFS110G02Sequence617004939 (3)
JMSF004I17Sequence396004939 (3)346010563 (4)

Alignment

This contig is upended


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JMFS099F02+                          TAGTCACCCTCATCCTTAACTTTCCTGGGTCTAAGTGTCCGTGAA
                      ____________________________________________________________
consensus                            TAGTCACCCTCATCCTTAACTTTCCTGGGTCTAAGTGTCCGTGAA
 
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JMFS099F02+           CCCTCTGTAATTTCCTTTACTTTCTCTTCTTCACCATCTTCTTCTCCTCTTCTTTCTTCA
                      ____________________________________________________________
consensus             CCCTCTGTAATTTCCTTTACTTTCTCTTCTTCACCATCTTCTTCTCCTCTTCTTTCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS099F02+           TGTTTAGCCCTTTTCCCTCGATTCCTCCTTTTATCTTCAGCATGGCCCTCATTGTCCAAT
                      ____________________________________________________________
consensus             TGTTTAGCCCTTTTCCCTCGATTCCTCCTTTTATCTTCAGCATGGCCCTCATTGTCCAAT
 
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JMFS099F02+           ATCTTTTTCTTCCTACCCCTGTTCCTACTGACCTCTTTGTCTGCTTCATCCCACTCCATC
                      ____________________________________________________________
consensus             ATCTTTTTCTTCCTACCCCTGTTCCTACTGACCTCTTTGTCTGCTTCATCCCACTCCATC
 
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JMFS099F02+           ATTTGTTCCTTGAGTTCCCCAATCTTCTCAATCGCCTTCTGACTTGACAGCCTCCTTGGA
                      ____________________________________________________________
consensus             ATTTGTTCCTTGAGTTCCCCAATCTTCTCAATCGCCTTCTGACTTGACAGCCTCCTTGGA
 
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JMFS099F02+           AATGCCCTTGCATGAGATTTGCAACCCTCATTCTCCTCCTCTTCTTCACCACCTGCCGCC
                      ____________________________________________________________
consensus             AATGCCCTTGCATGAGATTTGCAACCCTCATTCTCCTCCTCTTCTTCACCACCTGCCGCC
 
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JMFS099F02+           TTTCCCTTTTCAATGTCCATTAGCTCTGCACAATCCTCATCCTCTTTTTTATTTCCACCC
                      ____________________________________________________________
consensus             TTTCCCTTTTCAATGTCCATTAGCTCTGCACAATCCTCATCCTCTTTTTTATTTCCACCC
 
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JMFS099F02+           ACTTCTTCCTCATTCTCCGTATTCATTAGCTCCTCTTGCCCATGACCTTGACTGTCATTT
JMFS110G02+                                TTCATTAGCTCCTCTTGCCCATGACCTTGACTGTCATTT
                      ____________________________________________________________
consensus             ACTTCTTCCTCATTCTCCGTATTCATTAGCTCCTCTTGCCCATGACCTTGACTGTCATTT
 
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JMFS099F02+           TCCTGTGTTTTAGCATTACAGAGCTTATTCTTCTTCACTGAATCCCCGCTTTCCATTTCT
JMFS110G02+           TCCTGTGTTTAAGCAATACAGAGCTTATTCTTCTTCACTGAATCCCCGCTTTCCATTTCT
                      ____________________________________________________________
consensus             TCCTGTGTTTTAGCATTACAGAGCTTATTCTTCTTCACTGAATCCCCGCTTTCCATTTCT
 
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JMFS099F02+           TTCTCAACCTTTATTCCTGCTCCCGCTTCACCATTTTCATCTGGTATAAATTCGCTATCC
JMFS110G02+           TTCTCAACCTTTATTCCTGCTCCCGCTTCACCATTTTCATCTGGTATAAATTCGCTATCC
                      ____________________________________________________________
consensus             TTCTCAACCTTTATTCCTGCTCCCGCTTCACCATTTTCATCTGGTATAAATTCGCTATCC
 
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JMFS099F02+           CAGCCCTTCCCACCGGACTTATTCTTC                                 
JMFS110G02+           CAGCCCTTCCCACCGGACTTATTCTTCTTATTCACTGAACCCCCGTTTTCCCCTTCAATC
                      ____________________________________________________________
consensus             CAGCCCTTCCCACCGGACTTATTCTTCTTATTCACTGAACCCCCGTTTTCCCCTTCAATC
 
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JMFS110G02+           TCAGCCCCCATTCCAATTCCCTCTTCACCGCCATCCACTGGAATTTTGTTTATTTTCTGG
JMSF004I17+                                   TCACCGCCATCCACTGGAATTTGGTTTATTTTCTGG
                      ____________________________________________________________
consensus             TCAGCCCCCATTCCAATTCCCTCTTCACCGCCATCCACTGGAATTTTGTTTATTTTCTGG
 
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JMFS110G02+           TGACTCATACCGGAAATTTTCTCCTCTGCTACAGCTACAGCTCCAGTTTCTTCACTATTC
JMSF004I17+           TGACTCATACCGGAAATTTTCTCCTCTGCTACAGCTACAGCTCCAGTTTCTTCACTATTC
                      ____________________________________________________________
consensus             TGACTCATACCGGAAATTTTCTCCTCTGCTACAGCTACAGCTCCAGTTTCTTCACTATTC
 
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JMFS110G02+           TCTTTCCCGGACTCCGAATTTTCCTCGCTTTCCTTGAAACCCGCGCCCTTCTCGGCCGGA
JMSF004I17+           TCTTTCCCGGACTCCGAATTTTCCTCGCTTTCCTTGAAACCCGCGCCCTTCTCGGCCGGA
                      ____________________________________________________________
consensus             TCTTTCCCGGACTCCGAATTTTCCTCGCTTTCCTTGAAACCCGCGCCCTTCTCGGCCGGA
 
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JMFS110G02+           TTACTACGCTTCTTCGTCGGTTCTCCTTTTTTACATGATTGCTGCTGAAGCTCCAAGGAG
JMSF004I17+           TTACTACGCTTCTTCGTCGGTTCTCCTTTTTTACATGATTGCTGCTGAAGCTCCAAGGAG
                      ____________________________________________________________
consensus             TTACTACGCTTCTTCGTCGGTTCTCCTTTTTTACATGATTGCTGCTGAAGCTCCAAGGAG
 
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JMFS110G02+           TCGTCTTCCCCAAATTCCCGATCATCTTTTTCAATCTCCATATCATCCGTCACTGAGACT
JMSF004I17+           TCGTCTTCCCCAAATTCCCGATCATCTTTTTCAATCTCCATATCATCCGTCACTGAGACT
                      ____________________________________________________________
consensus             TCGTCTTCCCCAAATTCCCGATCATCTTTTTCAATCTCCATATCATCCGTCACTGAGACT
 
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JMFS110G02+           CCCTTCTCCGACATGGCATCGGCCTTATTGTTTCCGATCACCGTTTATTGTCCTTGATAA
JMSF004I17+           CCCTTCTCCGACATGGCATCGGCCTTATTGTTTCCGATCACCGTTTATTGTCCTTGATAA
                      ____________________________________________________________
consensus             CCCTTCTCCGACATGGCATCGGCCTTATTGTTTCCGATCACCGTTTATTGTCCTTGATAA
 
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JMFS110G02+           CCCGATTATTCCTCGCGTTTCACCACTCCCCCAGAGAA                      
JMSF004I17+           CCCGATTATTCCTCGCGTTTCACCACTCCCCCAGAGAATCTTCCCCCTTTTACCTTGTTC
                      ____________________________________________________________
consensus             CCCGATTATTCCTCGCGTTTCACCACTCCCCCAGAGAATCTTCCCCCTTTTACCTTGTTC