Contig 004937:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006E19+                               GGGGGATGAACGACAAGCATATGTGATTGAACGCCCGGA
                      ____________________________________________________________
consensus                                  GGGGGATGAACGACAAGCATATGTGATTGAACGCCCGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006E19+          GNCACTCGTGCATTTTGCACTGTGTTCTGGCAACCATTCAGATCCCGCGGTCAGAGTATA
                      ____________________________________________________________
consensus             GNCACTCGTGCATTTTGCACTGTGTTCTGGCAACCATTCAGATCCCGCGGTCAGAGTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006E19+          CACGCCAAAACGAATACTTCAAGAACTGGAAGCAGCAAAAGAAGAGTATATAAGAGCCAC
                      ____________________________________________________________
consensus             CACGCCAAAACGAATACTTCAAGAACTGGAAGCAGCAAAAGAAGAGTATATAAGAGCCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006E19+          CTTTGGTGNGAGGAAGGATCACAAGATCCTTCTACCCAAGATTGTCGAGTCATTCGCCAA
JMSF004H01+                                                   ATTGTCGAGTCATTCGCCAA
                      ____________________________________________________________
consensus             CTTTGGTGNGAGGAAGGATCACAAGATCCTTCTACCCAAGATTGTCGAGTCATTCGCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006E19+          GCANTCAGGCCTGTGCCCCGTGGCTGTAATGGAAATGCTCCAGCAGTCTTTGCCCGATTC
JMSF004H01+           GCACTCAGGCCTGTGCCCCGTGGCTGTAATGGAAATGCTCCAGCAGTCTTTGCCCGATTC
                      ____________________________________________________________
consensus             GCACTCAGGCCTGTGCCCCGTGGCTGTAATGGAAATGCTCCAGCAGTCTTTGCCCGATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006E19+          CCTGAAGAAGAGCCTCAAGAAATGCCAGCAAGGAAAGGCACGCAAGAGCATCGAATGGGT
JMSF004H01+           CCTGAAGAAGAGCCTCAAGAAATGCCAGCAAGGAAAGGCACGCAAGAGCATCGAATGGGT
                      ____________________________________________________________
consensus             CCTGAAGAAGAGCCTCAAGAAATGCCAGCAAGGAAAGGCACGCAAGAGCATCGAATGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006E19+          TCCCCACAGTTCCAGTTTCCGATATCTCATACNGAAGGANCTGGTGGAGTAATATAATTG
JMSF004H01+           TCCCCACAGTTCCAGTTTCCGATATCTCATACTGAAGGAACTGGTGGAGTAATATAATTG
                      ____________________________________________________________
consensus             TCCCCACAGTTCCAGTTTCCGATATCTCATACTGAAGGAACTGGTGGAGTAATATAATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006E19+          GTCGCTTGCTTGCTTGCTTACGGGTAGTTAATCCGAACTGGGAGGATAGATTTTCCATAG
JMSF004H01+           GTCGCTTGCTTGCTTGCTTACGGGTAGTTAATCCGAACTGGGAGGATAGATTTTCCATAG
                      ____________________________________________________________
consensus             GTCGCTTGCTTGCTTGCTTACGGGTAGTTAATCCGAACTGGGAGGATAGATTTTCCATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006E19+          GATAGATTCTCCATTGATGGAACTGAAGTTATTTGTAAGATTNGTGAAAGTT        
JMSF004H01+           GATAGATTCTCCATTGATGGAA-TGAAGTTATTTGTAAGATTTGTGAAAGTTTCCTGCAT
                      ____________________________________________________________
consensus             GATAGATTCTCCATTGATGGAACTGAAGTTATTTGTAAGATTTGTGAAAGTTTCCTGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004H01+           TGTTTGCGATGCTGCAAATTGGTTCTTTGTAGAGCTCTACTGTAAAAACAGTAAAGCTCC
                      ____________________________________________________________
consensus             TGTTTGCGATGCTGCAAATTGGTTCTTTGTAGAGCTCTACTGTAAAAACAGTAAAGCTCC