Contig 004935:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003F02Sequence393004935 (3)ref|XP_006338678.1|1e-27PREDICTED: sister chromatid cohesion 1 protein 2-like [Solanum tuberosum]767001271 (3)ref|XP_009804306.1|9e-45PREDICTED: sister chromatid cohesion 1 protein 2 isoform X2 [Nicotiana sylvestr
JMSF004B12Sequence204004935 (3)ref|XP_010315930.1|8e-05PREDICTED: sister chromatid cohesion 1 protein 2 isoform X3 [Solanum lycopersic
JMSF042D15Sequence796004935 (3)ref|XP_009804305.1|4e-71PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Nicotiana sylvestr760001271 (3)ref|XP_009804306.1|6e-44PREDICTED: sister chromatid cohesion 1 protein 2 isoform X2 [Nicotiana sylvestr

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF042D15+ CTTCCAAAGAGAACCT
                      ____________________________________________________________
consensus CTTCCAAAGAGAACCT
 
. : . : . : . : . : . :
JMSF042D15+ AGTTACACAAAGTCTTCCCATTCCTATTGAGTTGGTCTTATAACTTGTTGAGCCACAAGT
                      ____________________________________________________________
consensus AGTTACACAAAGTCTTCCCATTCCTATTGAGTTGGTCTTATAACTTGTTGAGCCACAAGT
 
. : . : . : . : . : . :
JMSF042D15+ GACATCATCCTCCACAAAGTGAGGTGAACAAACATCTCTGAGTGGAGTGTGATCTGGGGA
                      ____________________________________________________________
consensus GACATCATCCTCCACAAAGTGAGGTGAACAAACATCTCTGAGTGGAGTGTGATCTGGGGA
 
. : . : . : . : . : . :
JMSF042D15+ ATATGATTGAGGATGAGAAATATCTTCCTGATCATGATACTGTTCAGACACCAGGTCAGA
                      ____________________________________________________________
consensus ATATGATTGAGGATGAGAAATATCTTCCTGATCATGATACTGTTCAGACACCAGGTCAGA
 
. : . : . : . : . : . :
JMSF042D15+ TAAGCCAATCCGCAAACCATCACTCTTCCATGCATCTGAAAGCATAATTTCTTCATTGGG
                      ____________________________________________________________
consensus TAAGCCAATCCGCAAACCATCACTCTTCCATGCATCTGAAAGCATAATTTCTTCATTGGG
 
. : . : . : . : . : . :
JMSF042D15+ TCTCACATGAGCACTAAGTCCATCTTGATCATCCAGAATTTCCAACTCAAAAGCATCAAG
                      ____________________________________________________________
consensus TCTCACATGAGCACTAAGTCCATCTTGATCATCCAGAATTTCCAACTCAAAAGCATCAAG
 
. : . : . : . : . : . :
JMSF042D15+ TTCAAATCTCTTTGGGCGAGAGATTAAGCAGTAAGATGAATGTGTAGCTTTGAACTTTTT
                      ____________________________________________________________
consensus TTCAAATCTCTTTGGGCGAGAGATTAAGCAGTAAGATGAATGTGTAGCTTTGAACTTTTT
 
. : . : . : . : . : . :
JMSF003F02+ CAAGCTTAGTGAGCACCTTGTGGCAGTCATG
JMSF042D15+ GTTTGGTCTCTTTTCGCTTGCAAAATCAACAAGCTTAGTGAGCACCTTGTGGCAGTCATG
                      ____________________________________________________________
consensus GTTTGGTCTCTTTTCGCTTGCAAAATCAACAAGCTTAGTGAGCACCTTGTGGCAGTCATG
 
. : . : . : . : . : . :
JMSF003F02+ GAAGAGATATTCAACTTTCTTCGAGTATATTCTGACAATGCCCACAAGAAGGTGGCCTAA
JMSF042D15+ GAAGAGATATTCAACTTTCTTCGAGTATATTCTGACAATGCCCACAAGAAGGTGGCCTAA
                      ____________________________________________________________
consensus GAAGAGATATTCAACTTTCTTCGAGTATATTCTGACAATGCCCACAAGAAGGTGGCCTAA
 
. : . : . : . : . : . :
JMSF003F02+ AATTCTATATGTGACAACAGGGACTTCGTCTAGCAGAATTTTATCGACAGAAGAAGAGAT
JMSF042D15+ AATTCTATATGTGACAACAGGGACTTCGTCTAGCAGAATTTTATCGACAGAAGAAGAGAT
                      ____________________________________________________________
consensus AATTCTATATGTGACAACAGGGACTTCGTCTAGCAGAATTTTATCGACAGAAGAAGAGAT
 
. : . : . : . : . : . :
JMSF003F02+ GTTGGTTTGGCTGACTTGGTATTTGTTGAGGCGTTTATGA-AATGAGCAGCAACCCAAAT
JMSF042D15+ GTTGGTTTGGCTGACTTGGTATTTGTTGAGGCGTTTATGACAATGAGCAGCAACCCAAAT
JMSF004B12+ AATGAGCAGCAACCCAAAT
                      ____________________________________________________________
consensus GTTGGTTTGGCTGACTTGGTATTTGTTGAGGCGTTTATGACAATGAGCAGCAACCCAAAT
 
. : . : . : . : . : . :
JMSF003F02+ GTTTCCTAAGGCCCCCTTCTTTGAGAGGAGAACATGCGAGTAGAACATTTTCCTGTCTGC
JMSF042D15+ GTTTCCTAAGGCCCCCTTCTTTGAGAGGAGAACATGCGAGTAGAACATTTTCCTGTCTGC
JMSF004B12+ GTTTCCTAAGGCCCCCTTCTTTGAGAGGAGAACATGCGAGTAGAACATTTTCCTGTCTGC
                      ____________________________________________________________
consensus GTTTCCTAAGGCCCCCTTCTTTGAGAGGAGAACATGCGAGTAGAACATTTTCCTGTCTGC
 
. : . : . : . : . : . :
JMSF003F02+ TGTATCCCTCCCTTGTATTTGCAAAAGGGTTAGAGATGAGATGAAGAACACTCACTCTCT
JMSF042D15+ TGTATCCCTCCCTTGTATTTGCAAAAGGGTTAGAGATGAGATGAAGAACACTCACTCTCT
JMSF004B12+ TGTATCCCTCCCTTGTATTTGCAAAAGGGTTAGAGATGAGATGAAGAACACTCACTCTCT
                      ____________________________________________________________
consensus TGTATCCCTCCCTTGTATTTGCAAAAGGGTTAGAGATGAGATGAAGAACACTCACTCTCT
 
. : . : . : . : . : . :
JMSF003F02+ TTCACTCTCACCATTTCTGTGTGTTTAGGAGTTCTTGCTTTGTTTCGGAATTTGGCAGT
JMSF042D15+ TTCACTCTCACCATTTCTGTGTGTTTAGGAGTTCTTGCTTTGTTTCGGAATTTGGCAGT
JMSF004B12+ TTCACTCTCACCATTTCTGTGTGTTTAGGAGTTCTTGCTTTGTTTCGGAATTTGGCAGTC
                      ____________________________________________________________
consensus TTCACTCTCACCATTTCTGTGTGTTTAGGAGTTCTTGCTTTGTTTCGGAATTTGGCAGTC