Contig 004935:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003F02Sequence393004935 (3)ref|XP_006338678.1|1e-27PREDICTED: sister chromatid cohesion 1 protein 2-like [Solanum tuberosum]767001271 (3)ref|XP_009804306.1|9e-45PREDICTED: sister chromatid cohesion 1 protein 2 isoform X2 [Nicotiana sylvestr
JMSF004B12Sequence204004935 (3)ref|XP_010315930.1|8e-05PREDICTED: sister chromatid cohesion 1 protein 2 isoform X3 [Solanum lycopersic
JMSF042D15Sequence796004935 (3)ref|XP_009804305.1|4e-71PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Nicotiana sylvestr760001271 (3)ref|XP_009804306.1|6e-44PREDICTED: sister chromatid cohesion 1 protein 2 isoform X2 [Nicotiana sylvestr

Alignment

This contig is upended


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JMSF042D15+                                                       CTTCCAAAGAGAACCT
                      ____________________________________________________________
consensus                                                         CTTCCAAAGAGAACCT
 
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JMSF042D15+           AGTTACACAAAGTCTTCCCATTCCTATTGAGTTGGTCTTATAACTTGTTGAGCCACAAGT
                      ____________________________________________________________
consensus             AGTTACACAAAGTCTTCCCATTCCTATTGAGTTGGTCTTATAACTTGTTGAGCCACAAGT
 
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JMSF042D15+           GACATCATCCTCCACAAAGTGAGGTGAACAAACATCTCTGAGTGGAGTGTGATCTGGGGA
                      ____________________________________________________________
consensus             GACATCATCCTCCACAAAGTGAGGTGAACAAACATCTCTGAGTGGAGTGTGATCTGGGGA
 
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JMSF042D15+           ATATGATTGAGGATGAGAAATATCTTCCTGATCATGATACTGTTCAGACACCAGGTCAGA
                      ____________________________________________________________
consensus             ATATGATTGAGGATGAGAAATATCTTCCTGATCATGATACTGTTCAGACACCAGGTCAGA
 
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JMSF042D15+           TAAGCCAATCCGCAAACCATCACTCTTCCATGCATCTGAAAGCATAATTTCTTCATTGGG
                      ____________________________________________________________
consensus             TAAGCCAATCCGCAAACCATCACTCTTCCATGCATCTGAAAGCATAATTTCTTCATTGGG
 
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JMSF042D15+           TCTCACATGAGCACTAAGTCCATCTTGATCATCCAGAATTTCCAACTCAAAAGCATCAAG
                      ____________________________________________________________
consensus             TCTCACATGAGCACTAAGTCCATCTTGATCATCCAGAATTTCCAACTCAAAAGCATCAAG
 
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JMSF042D15+           TTCAAATCTCTTTGGGCGAGAGATTAAGCAGTAAGATGAATGTGTAGCTTTGAACTTTTT
                      ____________________________________________________________
consensus             TTCAAATCTCTTTGGGCGAGAGATTAAGCAGTAAGATGAATGTGTAGCTTTGAACTTTTT
 
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JMSF003F02+                                        CAAGCTTAGTGAGCACCTTGTGGCAGTCATG
JMSF042D15+           GTTTGGTCTCTTTTCGCTTGCAAAATCAACAAGCTTAGTGAGCACCTTGTGGCAGTCATG
                      ____________________________________________________________
consensus             GTTTGGTCTCTTTTCGCTTGCAAAATCAACAAGCTTAGTGAGCACCTTGTGGCAGTCATG
 
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JMSF003F02+           GAAGAGATATTCAACTTTCTTCGAGTATATTCTGACAATGCCCACAAGAAGGTGGCCTAA
JMSF042D15+           GAAGAGATATTCAACTTTCTTCGAGTATATTCTGACAATGCCCACAAGAAGGTGGCCTAA
                      ____________________________________________________________
consensus             GAAGAGATATTCAACTTTCTTCGAGTATATTCTGACAATGCCCACAAGAAGGTGGCCTAA
 
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JMSF003F02+           AATTCTATATGTGACAACAGGGACTTCGTCTAGCAGAATTTTATCGACAGAAGAAGAGAT
JMSF042D15+           AATTCTATATGTGACAACAGGGACTTCGTCTAGCAGAATTTTATCGACAGAAGAAGAGAT
                      ____________________________________________________________
consensus             AATTCTATATGTGACAACAGGGACTTCGTCTAGCAGAATTTTATCGACAGAAGAAGAGAT
 
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JMSF003F02+           GTTGGTTTGGCTGACTTGGTATTTGTTGAGGCGTTTATGA-AATGAGCAGCAACCCAAAT
JMSF042D15+           GTTGGTTTGGCTGACTTGGTATTTGTTGAGGCGTTTATGACAATGAGCAGCAACCCAAAT
JMSF004B12+                                                    AATGAGCAGCAACCCAAAT
                      ____________________________________________________________
consensus             GTTGGTTTGGCTGACTTGGTATTTGTTGAGGCGTTTATGACAATGAGCAGCAACCCAAAT
 
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JMSF003F02+           GTTTCCTAAGGCCCCCTTCTTTGAGAGGAGAACATGCGAGTAGAACATTTTCCTGTCTGC
JMSF042D15+           GTTTCCTAAGGCCCCCTTCTTTGAGAGGAGAACATGCGAGTAGAACATTTTCCTGTCTGC
JMSF004B12+           GTTTCCTAAGGCCCCCTTCTTTGAGAGGAGAACATGCGAGTAGAACATTTTCCTGTCTGC
                      ____________________________________________________________
consensus             GTTTCCTAAGGCCCCCTTCTTTGAGAGGAGAACATGCGAGTAGAACATTTTCCTGTCTGC
 
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JMSF003F02+           TGTATCCCTCCCTTGTATTTGCAAAAGGGTTAGAGATGAGATGAAGAACACTCACTCTCT
JMSF042D15+           TGTATCCCTCCCTTGTATTTGCAAAAGGGTTAGAGATGAGATGAAGAACACTCACTCTCT
JMSF004B12+           TGTATCCCTCCCTTGTATTTGCAAAAGGGTTAGAGATGAGATGAAGAACACTCACTCTCT
                      ____________________________________________________________
consensus             TGTATCCCTCCCTTGTATTTGCAAAAGGGTTAGAGATGAGATGAAGAACACTCACTCTCT
 
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JMSF003F02+           TTCACTCTCACCATTTCTGTGTGTTTAGGAGTTCTTGCTTTGTTTCGGAATTTGGCAGT 
JMSF042D15+           TTCACTCTCACCATTTCTGTGTGTTTAGGAGTTCTTGCTTTGTTTCGGAATTTGGCAGT 
JMSF004B12+           TTCACTCTCACCATTTCTGTGTGTTTAGGAGTTCTTGCTTTGTTTCGGAATTTGGCAGTC
                      ____________________________________________________________
consensus             TTCACTCTCACCATTTCTGTGTGTTTAGGAGTTCTTGCTTTGTTTCGGAATTTGGCAGTC