Contig 004934:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008C14Sequence643004934 (11)ref|XP_010669376.1|90.1PREDICTED: uncharacterized protein LOC104886611 [Beta vulgaris subsp. vulgaris]612004934 (11)ref|XP_010669376.1|90.1PREDICTED: uncharacterized protein LOC104886611 [Beta vulgaris subsp. vulgaris]
JMFF018K04Sequence549004934 (11)ref|XP_006344376.1|192PREDICTED: uncharacterized protein LOC102580040 [Solanum tuberosum]
JMFF021L22Sequence524004934 (11)ref|XP_006344376.1|192PREDICTED: uncharacterized protein LOC102580040 [Solanum tuberosum]529004934 (11)ref|XP_006344376.1|192PREDICTED: uncharacterized protein LOC102580040 [Solanum tuberosum]
JMFF051C03Sequence446004934 (11)ref|XP_006344376.1|184PREDICTED: uncharacterized protein LOC102580040 [Solanum tuberosum]483004934 (11)ref|XP_006344376.1|184PREDICTED: uncharacterized protein LOC102580040 [Solanum tuberosum]
JMFN005F17Sequence566004934 (11)ref|XP_006344376.1|192PREDICTED: uncharacterized protein LOC102580040 [Solanum tuberosum]
JMFN008M04Sequence433004934 (11)ref|XP_006344376.1|187PREDICTED: uncharacterized protein LOC102580040 [Solanum tuberosum]
JMFN012F15Sequence564004934 (11)ref|XP_006344376.1|196PREDICTED: uncharacterized protein LOC102580040 [Solanum tuberosum]
JMSF004A24Sequence268004934 (11)459002830 (3)ref|XP_006359395.1|3e-21PREDICTED: dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase-like

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008C14+                                                                    TTT
                      ____________________________________________________________
consensus                                                                      TTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008C14+           TTTTTTTGGACTACAGTAAAATTTGCCACTAATCAGCTATCAAAATGTGTATACATAATA
rJMFF008C14-                                      CTAATCAGCTATCAAAATGTGTATACATAATA
                      ____________________________________________________________
consensus             TTTTTTTGGACTACAGTAAAATTTGCCACTAATCAGCTATCAAAATGTGTATACATAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008C14+           CATATATAGTAATATAGTATAACTGTATAAGCCTAATCCATTGATAATGGCAAATCAAGC
rJMFF008C14-          CATATATAGTAATATAGTATAACTGTATAAGCCTAATCCATTGATAATGGCAAATCAAGC
                      ____________________________________________________________
consensus             CATATATAGTAATATAGTATAACTGTATAAGCCTAATCCATTGATAATGGCAAATCAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008C14+           TGGACAAATTTGTGCAAGAAACAGCTTCTCTTTTGCCAGAGAAACCTAATCCAACCACAA
rJMFF008C14-          TGGACAAATTTGTGCAAGAAACAGCTTCTCTTTTGCCAGAGAAACCTAATCCAACCACAA
                      ____________________________________________________________
consensus             TGGACAAATTTGTGCAAGAAACAGCTTCTCTTTTGCCAGAGAAACCTAATCCAACCACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008C14+           TTCTTAGGGATTCAGAAATTCAAACTGGATTCATTATCATACCAAGTGAAGTGTTTATTA
rJMFF008C14-          TTCTTAGGGATTCAGAAATTCAAACTGGATTCATTATCATACCAAGTGAAGTGTTTATTA
JMFN008M04+                       CAGAAATTCAAACTGGATTCATTATCATACCAAGTGAAGTGTTTATTA
JMFN012F15+                       CAGAAATTCAAACTGGATTCATTATCATACCAAGTGAAGTGTTTATTA
JMFF018K04+                                                                     TA
                      ____________________________________________________________
consensus             TTCTTAGGGATTCAGAAATTCAAACTGGATTCATTATCATACCAAGTGAAGTGTTTATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008C14+           CACGAAATAATAATAATAATCCCGTTTGTAGAGAGGGAGGGATAATACCTAAAGGTTCAT
rJMFF008C14-          CACGAAATAATAATAATAATCCCGTTTGTAGAGAGGGAGGGATAATACCTAAAGGTTCAT
JMFN008M04+           CACGAAATAATAATAATAATCCCGTTTGTAGAGAGGGAGGGATAATACCTAAAGGTTCAT
JMFN012F15+           CACGAAATAATAATAATAATCCCGTTTGTAGAGAGGGAGGGATAATACCTAAAGGTTCAT
JMFF021L22+                                  GTTTGTAGAGAGGGAGGGATAATACCTAAAGGTTCAT
rJMFF021L22-                            ATCCTGTTTGTAGAGAGGGAGGGATAATACCTAAAGGTTCAT
JMFN005F17+                      AATAACAATCCTGTTTGTAGAGAGGGAGGGATAATACCTAAAGGTTCAT
JMFF051C03+                      AATAACAATCCTGTTTGTAGAGAGGGAGGGATAATACCTAAAGGTTCAT
rJMFF051C03-                     AATAACAATCCTGTTTGTAGAGAGGGAGGGATAATACCTAAAGGTTCAT
JMFF018K04+           TTACACAAAACAATAACAATCCTGTTTGTAGAGAGGGAGGGATAATACCTAAAGGTTCAT
                      ____________________________________________________________
consensus             CACGAAATAATAATAATAATCCTGTTTGTAGAGAGGGAGGGATAATACCTAAAGGTTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008C14+           TCGAAGTTATAATGCTTGTCAACCTCTTCAGATACATCCCAAGTGCAGCTCATGCCCTTT
rJMFF008C14-          TCGAAGTTATAATGCTTGTCAACCTCTTCAGATACATCCCAAGTGCAGCTCATGCCCTTT
JMFN008M04+           TCGAAGTTATAATGCTTGTCAACCTCTTCAGATACATCCCAAGTGCAGCTCATGCCCTTT
JMFN012F15+           TCGAAGTTATAATGCTTGTCAACCTCTTCAGATACATCCCAAGTGCAGCTCATGCCCTTT
JMFF021L22+           TCGAACTTATAATGCTTGTCAACCTCTTCAGATACATCCCAAGTGCAGCTCATGCCCTTT
rJMFF021L22-          TCGAACTTATAATGCTTGTCAACCTCTTCAGATACATCCCAAGTGCAGCTCATGCCCTTT
JMFN005F17+           TCGAACTTATAATGCTTGTCAACCTCTTCAGATACATCCCAAGTGCAGCTCATGCCCTTT
JMFF051C03+           TCGAACTTATAATGCTTGTCAACCTCTTCAGATGCATCCCAAGTGCAGCTCATGCCCTTT
rJMFF051C03-          TCGAACTTATAATGCTTGTCAACCTCTTCAGATGCATCCCAAGTGCAGCTCATGCCCTTT
JMFF018K04+           TCGAACTTATAATGCTTGTCAACCTCTTCAGATACATCCCAAGTGCAGCTCATGCCCTTT
                      ____________________________________________________________
consensus             TCGAACTTATAATGCTTGTCAACCTCTTCAGATACATCCCAAGTGCAGCTCATGCCCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008C14+           GGGAACTCGACCAAGTCGCCCGCCCCAATTTCAACAGCTTCATTTGATCCGTCTGGGTAC
rJMFF008C14-          GGGAACTCGACCAAGTCGCCCGCCCCAATTTCAACAGCTTCATTTGATCCGTCTGGGTAC
JMFN008M04+           GGGAACTCGACCAAGTCGCCCGCCCCAATTTCAACAGCTTCATTTGATCCGTCTGGGTAC
JMFN012F15+           GGGAACTCGACCAAGTCGCCCGCCCCAATTTCAACAGCTTCATTTGATCCGTCTGGGTAC
JMFF021L22+           GGGAACTCGACCAAGTCGCCCGCCCCAATTTCAACACCTTCATTTGATCCGTCCGGGTAC
rJMFF021L22-          GGGAACTCGACCAAGTCGCCCGCCCCAATTTCAACACCTTCATTTGATCCGTCCGGGTAC
JMFN005F17+           GGGAACTCGACCAAGTCGCCCGCCCCAATTTCAACACCTTCATTTGATCCGTCCGGGTAC
JMFF051C03+           GGGAACTCGACCAAGTCGCCCGCCCCAATTTCAACACCTTCATTTGATCCGTCCGGGTAA
rJMFF051C03-          GGGAACTCGACCAAGTCGCCCGCCCCAATTTCAACACCTTCATTTGATCCGTCCGGGTAA
JMFF018K04+           GGGAACTCGACCAAGTCGCCCGCCCCAATTTCAACACCTTCATTTGATCCGTCCGGGTAC
                      ____________________________________________________________
consensus             GGGAACTCGACCAAGTCGCCCGCCCCAATTTCAACACCTTCATTTGATCCGTCCGGGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008C14+           ACTTTCACCTTCCCCTTCAG-AAATAGCACGTCTCCTAGGAAGAGTATGTCCACGGGAAT
rJMFF008C14-          ACTTTCACCTTCCCCTTCAG-AAATAGCACGTCTCCTAGGAAGAGTATGTCCACGGGAAT
JMFN008M04+           ACTTTCACCTTCCCCTTCAGCAAATAGCACGTCTCCTTGGAAGAGTATGTCCACGGGAAT
JMFN012F15+           ACTTTCACCTTCCCCTTCAGCAAATAGCACGTCTCCTTGGAAGAGTATGTCCACGGGAAT
JMFF021L22+           ACTTTCACCTTCCCCTTCAGCAGATAGCACGTCTCCTTGGAAGAGTATGTCCATGGGAAT
rJMFF021L22-          ACTTTCACCTTCCCCTTCAGCAGATAGCACGTCTCCTTGGAAGAGTATGTCCATGGGAAT
JMFN005F17+           ACTTTCACCTTCCCCTTCAGCAGATAGCACGTCTCCTTGGAAGAGTATGTCCATGGGAAT
JMFF051C03+           ACTTTCACCTTCCCCTTCAGCAGATAGCACGTCTCCTTGGAAGAGTATGTCCATGGGAAT
rJMFF051C03-          ACTTTCACCTTCCCCTTCAGCAGATAGCACGTCTCCTTGGAAGAGTATGTCCATGGGAAT
JMFF018K04+           ACTTTCACCTTCCCCTTCAGCAGATAGCACGTCTCCTTGGAAGAGTATGTCCATGGGAAT
                      ____________________________________________________________
consensus             ACTTTCACCTTCCCCTTCAGCAGATAGCACGTCTCCTTGGAAGAGTATGTCCATGGGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008C14+           TTGCTCGGAGGGCATCCCCACTTGGGCCAAGATCTGACTCCCAACTCAGAGAGTTTGGAC
rJMFF008C14-          TTGCTCGGAGGGCATCCCCACTTGGGCCAAGATCTGACTCCCAACTCAGAGAGTTTGGAC
JMFN008M04+           TTGCTCGGAGGGCATCCCCACTTGGGCCAAGATCTGACTCCCAACTCAGAGAGTTTGGAC
JMFN012F15+           TTGCTCGGAGGGCATCCCCACTTGGGCCAAGATCTGACTCCCAACTCAGAGAGTTTGGAC
JMFF021L22+           TTGCTCGGAGGGCATCCCCACTTGGGCCAAGATCTGACTCCCAACTCAGAGAGTTTGGAC
rJMFF021L22-          TTGCTCGGAGGGCATCCCCACTTGGGCCAAGATCTGACTCCCAACTCAGAGAGTTTGGAC
JMFN005F17+           TTGCTCGGAGGGCATCCCCACTTGGGCCAAGATCTGACTCCCAACTCAGAGAGTTTGGAC
JMFF051C03+           TTGCTCGGAGGGCATCCCCACTTGGGCCAAGATCTGACTCCCAACTCAGAGAGTTTGGAC
rJMFF051C03-          TTGCTCGGAGGGCATCCCCACTTGGGCCAAGATCTGACTCCCAACTCAGAGAGTTTGGAC
JMFF018K04+           TTGCTCGGAGGGCATCCCCACTTGGGCCAAGATCTGACTCCCAACTCAGAGAGTTTGGAC
                      ____________________________________________________________
consensus             TTGCTCGGAGGGCATCCCCACTTGGGCCAAGATCTGACTCCCAACTCAGAGAGTTTGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008C14+           TCGGGAGGGTCGGTGATGATCTTGATTCCGCCTTTCTCAGTGGCCATCACGCCGCCGTGA
rJMFF008C14-          TCGGGAGGGTCGGTGATGATCTTGATTCCGCCTTTCTCAGTGGCCATCACGCCGCCGTGA
JMFN008M04+           TCGGGAGGGTCGGTGATGATCTTGATTCCGCCTTTCTCAGTGGCCATCACGCCGCCGTGA
JMFN012F15+           TCGGGAGGGTCGGTGATGATCTTGATTCCGCCTTTCTCAGTGGCCATCACGCCGCCGTGA
JMFF021L22+           TCGGGAGGGTCGGTGATGATCTTGATTCCGCCTTTCTCAATGGCCATCACGCCGCCGTGA
rJMFF021L22-          TCGGGAGGGTCGGTGATGATCTTGATTCCGCCTTTCTCAATGGCCATCACGCCGCCGTGA
JMFN005F17+           TCGGGAGGGTCGGTGATGATCTTGATTCCGCCTTTCTCAATGGCCATCACGCCGCCGTGA
JMFF051C03+           TCGGGAGGGTCGGTGATGATCTTGATTCCGCCTTTCTCAATGGCCATCACGCCGCCGTGA
rJMFF051C03-          TCGGGAGGGTCGGTGATGATCTTGATTCCGCCTTTCTCAATGGCCATCACGCCGCCGTGA
JMFF018K04+           TCGGGAGGGTCGGTGATGATCTTGATTCCGCCTTTCTCAATGGCCATCACGCCGCCGTGA
JMSF004A24+                                           TTTCTCAATGGCCATCACGCCGCCGTGA
                      ____________________________________________________________
consensus             TCGGGAGGGTCGGTGATGATCTTGATTCCGCCTTTCTCAATGGCCATCACGCCGCCGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008C14+           GGTTCCGTCGAAGCTCTTATCACGATTCGGAGTGCTCTTT                    
rJMFF008C14-          GGTTCCGTCGAAGCTCTTATCACGATTCGGAGTGCTCTTT                    
JMFN008M04+           GGTTCCGTCGAAGCTCTTATCACGA                                   
JMFN012F15+           GGTTCCGTCGAAGCTCTTATCACGATTCGGAGTGCTCTTTTGGTTTTGGTTTGGGATTTC
JMFF021L22+           GGTTCCGTCGAAGCTCTTATCACGATTCGGAGTGCTCTTTCGGTTTGGGTTTGGGACTTC
rJMFF021L22-          GGTTCCGTCGAAGCTCTTATCACGATTCGGAGTGCTCTTTCGGTTTGGGTTTGGGACTTC
JMFN005F17+           GGTTCCGTCGAAGCTCTTATCACGATTCGGAGTGCTCTTTCGGTTTGGGTTTGGGACTTC
JMFF051C03+           GGTTCCGTCGAAGCTCTTATCACGATTCGGAGTGCT                        
rJMFF051C03-          GGTTCCGTCGAAGCTCTTATCACGATTC                                
JMFF018K04+           GGTTCCGTCGAAGCTCTTATCACGATTCGGAGTGCTCTTTCGGTTTGGGTTTGGGACTTC
JMSF004A24+           GGTTCCGTCGAAGCTCTTATCACGATTCGGAGTGCTCTTTCGGTTTGGGTTTGGGACTTC
                      ____________________________________________________________
consensus             GGTTCCGTCGAAGCTCTTATCACGATTCGGAGTGCTCTTTCGGTTTGGGTTTGGGACTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN012F15+           ACTGAAGTAAAAGAGATAGAGTTGCGGCCCACCACTTTATACCTATTCTTCACTTTGGGT
JMFF021L22+           AGTGAAGTAAAAGAGATAGAGTTGCGGCCCACCACTTTATACCTATTCTTCACTTTGGGT
rJMFF021L22-          AGTGAAGTAAAAGAGATAGAGTTGCGGCCCACCACTTTATACCTATTCTTCACTTTGGGT
JMFN005F17+           AGTGAAGTAAAAGAGATAGAGTTGCGGCCCACCACTTTATACCTATTCTTCACTTTGG  
JMFF018K04+           AGTGAAGTAAAAGAGATAGAGTTGCGGCCCACCACTTTATACCTATTCTTCACTTTGGGT
JMSF004A24+           AGTGAAGTAAAAGAGATAGAGTTGCGGCCCACCACTTTATACCTATTCTTCACTTTGGGT
                      ____________________________________________________________
consensus             AGTGAAGTAAAAGAGATAGAGTTGCGGCCCACCACTTTATACCTATTCTTCACTTTGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN012F15+           CTGTTATTAG                                                  
JMFF021L22+           CTGTTATTAGGGTTAGCAGTGAAGCACCCACTTAATGCAACAGTGGCCATGGCTTTTTGA
rJMFF021L22-          CTGTTATTAGGGTTAGCAGTGAAGCACCCACTTAATGCAACAGTGGCCATGGCTTTTTGA
JMFF018K04+           CTGTTATTAGGGTTAGCAGTGAAGCACCCACTTAATGCAACAGTGGCCATGGCTTTTTGA
JMSF004A24+           CTGTTATTAGGGTTAGCAGTGAAGCACCCACTTAATGCAACAGTGGCCATGGCTTTTTGA
                      ____________________________________________________________
consensus             CTGTTATTAGGGTTAGCAGTGAAGCACCCACTTAATGCAACAGTGGCCATGGCTTTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF021L22+           TTAACAC                                                     
rJMFF021L22-          TTAACAC                                                     
JMFF018K04+           TTCACAC                                                     
JMSF004A24+           TTCACACAATTCTCCAATTCTGCATACAAAATACTATAATGCAACCATTCACCCTTGGCC
                      ____________________________________________________________
consensus             TTAACACAATTCTCCAATTCTGCATACAAAATACTATAATGCAACCATTCACCCTTGGCC