Contig 004931:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027P13Sequence564004931 (5)ref|XP_009615987.1|6e-84PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon759008245 (4)ref|XP_008380252.1|3e-70PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon
JMSF003F18Sequence407004931 (5)ref|XP_009615987.1|6e-46PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon794008245 (4)gb|KHN18127.1|3e-102Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Gly
JMSF003M01Sequence355004931 (5)ref|XP_009615987.1|4e-19PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon761008245 (4)ref|XP_011098065.1|1e-85PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon
JMSF027J08Sequence645004931 (5)ref|XP_009615987.1|5e-92PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon
JMSF029F15Sequence721004931 (5)ref|XP_009615987.1|9e-106PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon727008245 (4)ref|XP_011098065.1|2e-86PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochon

Alignment

This contig is upended


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JMSF029F15+                                                              TGAGACACG
                      ____________________________________________________________
consensus                                                                TGAGACACG
 
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JMSF029F15+           CCCATATGTTGGTTCAAACCAACAACACCACAGAAAGATGCTGGTTGTCTAACACTCCCG
                      ____________________________________________________________
consensus             CCCATATGTTGGTTCAAACCAACAACACCACAGAAAGATGCTGGTTGTCTAACACTCCCG
 
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JMSF027J08+               TATCACTTCCTAGTGATACTGTGCACTGCCTAGCAGAAACAGCAGCAGCTGAACCA
JMSF029F15+           CCTGTATCACTTCCTAGTGATACTGTGCACTGCCTAGCAGAAACAGCAGCAGCTGAACCA
                      ____________________________________________________________
consensus             CCTGTATCACTTCCTAGTGATACTGTGCACTGCCTAGCAGAAACAGCAGCAGCTGAACCA
 
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JMSF027J08+           CCTGATGATCCACCAGGCACCCGTGTCAAATCCCAAGGATTTGCTGTCACCTGATAAGCA
JMFF027P13+                                      AAATCCCAAGGATTTGCTGTCACCTGATAAGCA
JMSF029F15+           CCTGATGATCCACCAGGCACCCGTGTCAAATCCCAAGGATTTGCTGTCACCTGATAAGCA
                      ____________________________________________________________
consensus             CCTGATGATCCACCAGGCACCCGTGTCAAATCCCAAGGATTTGCTGTCACCTGATAAGCA
 
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JMSF027J08+           GAGCCTTCAGTAGTACTCCCCATACCAAACTCATCCAAATTAGTCTTCCCAATCACAATG
JMFF027P13+           GAGCCTTCAGTAGTACTCCCCATACCAAACTCATCCAAATTAGTCTTCCCAATCACAATG
JMSF029F15+           GAGCCTTCAGTAGTACTCCCCATACCAAACTCATCCAAATTAGTCTTCCCAATCACAATG
                      ____________________________________________________________
consensus             GAGCCTTCAGTAGTACTCCCCATACCAAACTCATCCAAATTAGTCTTCCCAATCACAATG
 
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JMSF027J08+           CCGCCGCATTGTCTCACATTCCTCACTGCCGTCGCATCGAAAGCCGGTCGATAATTCTCC
JMFF027P13+           CCGCCGCATTGTCTCACATTCCTCACTGCCGTCGCATCGAAAGCCGGTCGATAATTCTCC
JMSF029F15+           CCGCCGCATTGTCTCACATTCCTCACTGCCGTCGCATCGAAAGCCGGTCGATAATTCTCC
                      ____________________________________________________________
consensus             CCGCCGCATTGTCTCACATTCCTCACTGCCGTCGCATCGAAAGCCGGTCGATAATTCTCC
 
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JMSF027J08+           AGAATCTTCGACCCGGCAGTTGATGGCATATCCGCAGTACAAATATTATCCTTCACAGCA
JMFF027P13+           AGAATCTTCGACCCGGCAGTTGATGGCATATCCGCAGTACAAATATTATCCTTCACAGCA
JMSF003F18+                      CCCGGCAGTTGATGGCATATCCGCAGTACAAATATTATCCTTCACAGCA
JMSF029F15+           AGAATCTTCGACCCGGCAGTTGATGGCATATCCGCAGTACAAATATTATCCTTCACAGCA
                      ____________________________________________________________
consensus             AGAATCTTCGACCCGGCAGTTGATGGCATATCCGCAGTACAAATATTATCCTTCACAGCA
 
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JMSF027J08+           ACAAAGACACCGGCGAGGGGGCCCACCTCCTCATGGTTGGAAATCTTCCTATCGATCTCC
JMFF027P13+           ACAAAGACACCGGCGAGGGGGCCCACCTCCTCATGGTTGGAAATCTTCCTATCGATCTCC
JMSF003F18+           ACAAAGACACCGGCGAGGGGGCCCACCTCCTCATGGTTGGAAATCTTCCTATCGATCTCC
JMSF029F15+           ACAAAGACACCGGCGAGGGGGCCCACCTCCTCATGGTTGGAAATCTTCCTATCGATCTCC
                      ____________________________________________________________
consensus             ACAAAGACACCGGCGAGGGGGCCCACCTCCTCATGGTTGGAAATCTTCCTATCGATCTCC
 
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JMSF027J08+           TCGGCCTCTCTCAGCACCGTGTCGGAGACGTGGAGGAAGCTCTTGAGGTGGGGCTCGGTG
JMFF027P13+           TCGGCCTCTCTCAGCACCGTGTCGGAGACGTGGAGGAAGCTCTTGAGGTGGGGCTCGGTG
JMSF003F18+           TCGGCCTCTCTCAGCACCGTGTCGGAGACGTGGAGGAAGCTCTTGAGGTGGGGCTCGGTG
JMSF029F15+           TCGGCCTCTCTCAGCACCGTGTCGGAGACGTGGAGGAAGCTCTTGAGGTGGGGCTCGGTG
JMSF003M01+                CTCTCTCAGCACCGTGTCGGAGACGTGGAGGAAGCTCTTGAGGTGGGGCTCGGTG
                      ____________________________________________________________
consensus             TCGGCCTCTCTCAGCACCGTGTCGGAGACGTGGAGGAAGCTCTTGAGGTGGGGCTCGGTG
 
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JMSF027J08+           CGTCGGAGGCGGGAGAGGAAGGTCTGCGCTAGCTCCACGGCGGAAGTCTCGCCGGCCAGG
JMFF027P13+           CGTCGGAGGCGGGAGAGGAAGGTCTGCGCTAGCTCCACGGCGGAAGTCTCGCCGGCCAGG
JMSF003F18+           CGTCGGAGGCGGGAGAGGAAGGTCTGCGCTAGCTCCACGGCGGAAGTCTCGCCGGCCAGG
JMSF029F15+           CGTCGGAGGCGGGAGAGGAAGGTCTGCGCTAGCTCCACGGCGGAAGTCTCGCCGGCCAGG
JMSF003M01+           CGTCGGAGGCGGGAGAGGAAGGTCTGCGCTAGCTCCACGGCGGAAGTCTCGCCGGCCAGG
                      ____________________________________________________________
consensus             CGTCGGAGGCGGGAGAGGAAGGTCTGCGCTAGCTCCACGGCGGAAGTCTCGCCGGCCAGG
 
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JMSF027J08+           AGGGATTTGCGGATGGTGAGGATTTGGGAGGCCGGTGGTAGGGTGGCTGTAGCGGCGGAG
JMFF027P13+           AGGGATTTGCGGATGGTGAGGATTTGGGAGGCCGGTGGTAGGGTGGCTGTAGCGGCGGAG
JMSF003F18+           AGGGATTTGCGGATGGTGAGGATTTGGGAGGCCGGTGGTAGGGTGGCTGTAGCGGCGGAG
JMSF029F15+           AGGGATTTGCGGATGGTGAGGATTTGGGAGGCCGGTGGTAGGGTGGCTGTAGCGGCGGAG
JMSF003M01+           AGGGATTTGCGGATGGTGAGGATTTGGGAGGCCGGTGGTAGGGTGACTGTAGCGGCGGAG
                      ____________________________________________________________
consensus             AGGGATTTGCGGATGGTGAGGATTTGGGAGGCCGGTGGTAGGGTGGCTGTAGCGGCGGAG
 
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JMSF027J08+           GAGAGGGGTATGGTTTGAGAGGTGTGGAGGCATTTGACCTTCAGAGGGAAGCGGAGGAGC
JMFF027P13+           GAGAGGGGTATGGTTTGAGAGGTGTGGAGGCATTTGACCTTCAGAGGGAAGCGGAGGAGC
JMSF003F18+           GAGAGGGGTATGGTTTGAGAGGTGTGGAGGCATTTGACCTTCAGAGGGAAGCGGAGGAGC
JMSF029F15+           GAGAGGGGTATGGTTTGAGAGGTGTGGAGGCATTTGACCTTCAGAGGGAAGCGGAGGAGC
JMSF003M01+           GAGAGGGGTATGGTTTGAGAGGTGTGGAGGCATTTGACCTTCAGAGGGAAGCGGAGGAGC
                      ____________________________________________________________
consensus             GAGAGGGGTATGGTTTGAGAGGTGTGGAGGCATTTGACCTTCAGAGGGAAGCGGAGGAGC
 
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JMSF027J08+           CGCGGAGTGTGATGAATTGAAGATAGCATTTTCTGATGAGAGGGTGCT            
JMFF027P13+           CGCGGAGTGTGATGAATTGAAGATAGCATTTTCTGATGAGAGGGTGCTGA          
JMSF003F18+           CGCGGAGTGTGATGAATTGAAGATAGCATTTTCTGATGAGAGGGTGCTGA          
JMSF029F15+           CGCGGAGTGTGATGAATTGAAGATAGCATTTTCTGATGAGAGGGTGCTGA          
JMSF003M01+           CGCGGAGTGTGATGAATTGAAGATAGCATTTTCTGATGAGAGGGTGCTGATGAGCAGTGA
                      ____________________________________________________________
consensus             CGCGGAGTGTGATGAATTGAAGATAGCATTTTCTGATGAGAGGGTGCTGATGAGCAGTGA
 
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JMSF003M01+           GAGGTTTTGCAGGTTTTATCTACTCGACTACTCCTAAGAATTTGCTATTTCTTCTTCCTC
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consensus             GAGGTTTTGCAGGTTTTATCTACTCGACTACTCCTAAGAATTTGCTATTTCTTCTTCCTC