Contig 004930:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L02-              TATCGCACTATCAGGTTCCGTCGAAGCAAAGAGATTTAAGTTCCAAAGTACATATC
                      ____________________________________________________________
consensus                 TATCGCACTATCAGGTTCCGTCGAAGCAAAGAGATTTAAGTTCCAAAGTACATATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L02-          ATGTGCTAGTAAAAGATGGGGCGATGCTCTCCATTTCTGCTGCTTGAATTGGGGCTCGAG
                      ____________________________________________________________
consensus             ATGTGCTAGTAAAAGATGGGGCGATGCTCTCCATTTCTGCTGCTTGAATTGGGGCTCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L02-          AGAGAGAGAGATTGAATTCACTTGCTCTTTTTGTTTTCTTTGGCGTAGTCGTGGATTAGT
                      ____________________________________________________________
consensus             AGAGAGAGAGATTGAATTCACTTGCTCTTTTTGTTTTCTTTGGCGTAGTCGTGGATTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009L06+           GCTTCAACATCTTTCCAAAACAGCCCCTCCACAAGAACTCCATCCTTGGTAAACCATTGT
rJMSF003L02-          GCTTCAACATCTTTCCAAAACAGCCCCTCCACAAGAACTCCATCCTTGGTAAACCATTGT
                      ____________________________________________________________
consensus             GCTTCAACATCTTTCCAAAACAGCCCCTCCACAAGAACTCCATCCTTGGTAAACCATTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009L06+           GTTACGCTCTTGGTAAGCTCCACTGGTGATTTTGCTGAGATTGACTGGGGATCTGCACTC
rJMSF003L02-          GTTACGCTCTTGGTAAGCTCCACTGGTGATTTTGCTGAGATTGACTGGGGATCTGCACTC
                      ____________________________________________________________
consensus             GTTACGCTCTTGGTAAGCTCCACTGGTGATTTTGCTGAGATTGACTGGGGATCTGCACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009L06+           GCTATTGTGAGTGTATACATATCTGAGAATCTAGGCAACTTCGAAGACACGACTAAGCCA
rJMSF003L02-          GCTATTGTGAGTGTATACATATCTGAGAATCTAGGCAACTTCGAAGACACGACTAAGCCA
                      ____________________________________________________________
consensus             GCTATTGTGAGTGTATACATATCTGAGAATCTAGGCAACTTCGAAGACACGACTAAGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009L06+           GTA--------------AGCTGGAGGATAAGTGAATAGAATAGCATTCTTCTCCTTTGTG
rJMSF003L02-          GTACTGTTAAAAGATCCAGCTGGAGGATAAGTGAATAGAATAGCATTCTTCTCCTTTGTG
JMSF003L02+                            AGCTGGAGGATAAGTGAATAGAATAGCATTCTTCTCCTTTGTG
                      ____________________________________________________________
consensus             GTACTGTTAAAAGATCCAGCTGGAGGATAAGTGAATAGAATAGCATTCTTCTCCTTTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009L06+           TACACAATCACCTGCAAAATCACATTGAATATAATATACAACACGATGCAGCCGAGGAGA
rJMSF003L02-          TACACAATCACCTGCAAAATCACATTGAATATAATATACAACACGATGCAGCCGAGGAGA
JMSF003L02+           TACACAATCACCTGCAAAATCACATTGAATATAATATACAACACGATGCAGCCGAGGAGA
                      ____________________________________________________________
consensus             TACACAATCACCTGCAAAATCACATTGAATATAATATACAACACGATGCAGCCGAGGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009L06+           AAATTCCGATTATCAGGGAATTTGTTGTTGTAGAACTGAGCGAAGAGAGCAATTGTGATA
rJMSF003L02-          AAATTCCGATTATCAGGGAATTTCTTGTTGTAGAACTGAGCGAAGAGAGCAATTGTGATA
JMSF003L02+           AAATTCCGATTATCAGGGAATTTCTTGTTGTAGAACTGAGCGAAGAGAGCAATTGTGATA
                      ____________________________________________________________
consensus             AAATTCCGATTATCAGGGAATTTCTTGTTGTAGAACTGAGCGAAGAGAGCAATTGTGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009L06+           ATAACGACCCCAAGCAACAATCTAATGTTGCTCAGCCTCACATCCTCCGTGTACCCCTTG
rJMSF003L02-          ATAACGACCCCAAGCAACAATCTAATGTTGCT-AGCCTCACATCCTCCGTGTACCCCTTG
JMSF003L02+           ATAACGACCCCAAGCAACAATCTAATGTTGCT-AGCCTCACATCCTCCGTGTACCCCTTG
                      ____________________________________________________________
consensus             ATAACGACCCCAAGCAACAATCTAATGTTGCT-AGCCTCACATCCTCCGTGTACCCCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009L06+           CTCGTCACGATCTCAGAAACGGACTCATCGAGGAGGTGCTTGATGGAGCCATGATCCAAA
rJMSF003L02-          CTCGTCACGATCTCAGAAACGGACTCATCGAGGAGGTGCTTGATGGAGCCATGATCCAAA
JMSF003L02+           CTCGTCACGATCTCAGAAACGGACTCATCGAGGAGGTGCTTGATGGAGCCATGATCCAAA
                      ____________________________________________________________
consensus             CTCGTCACGATCTCAGAAACGGACTCATCGAGGAGGTGCTTGATGGAGCCATGATCCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009L06+           AGGTTGGCCTTTTTGGGGTTCTTCTTG                                 
rJMSF003L02-          AGGTTGGCCTTTTTGGGGTTCTTCTTGTTGGCAGAAGCTGCTGCATCTCCCTTCTTCTCC
JMSF003L02+           AGGTTGGCCTTTTTGGGGTTCTTCTTGTTGGCAGAAGCTGCTGCATCTCCCTTCTTCTCC
                      ____________________________________________________________
consensus             AGGTTGGCCTTTTTGGGGTTCTTCTTGTTGGCAGAAGCTGCTGCATCTCCCTTCTTCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L02-          TG                                                          
JMSF003L02+           TGCATTTTCGTAGGGTTTTTGTCGGGAGATCGATTCGATCAGTGTGCTGTGCGTGATCTC
                      ____________________________________________________________
consensus             TGCATTTTCGTAGGGTTTTTGTCGGGAGATCGATTCGATCAGTGTGCTGTGCGTGATCTC