Contig 004929:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001J17Sequence366004929 (3)emb|CDP14487.1|8e-10unnamed protein product [Coffea canephora]760011424 (4)gb|ADM88045.1|7e-93CDPK11 [Nicotiana tabacum]
JMSF003I10Sequence418004929 (3)emb|CDP14487.1|2e-09unnamed protein product [Coffea canephora]749011424 (4)ref|XP_010911424.1|1e-80PREDICTED: calcium-dependent protein kinase 4 [Elaeis guineensis]
JMSF048F19Sequence644004929 (3)ref|XP_010645740.1|5e-40PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Vitis vinifera]774011424 (4)gb|ADM88045.1|4e-78CDPK11 [Nicotiana tabacum]

Alignment

This contig is upended


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JMSF048F19+                           ATAGACTTACAAGCATAGTCAACACCAGTGGAAATCTCAGTGCA
                      ____________________________________________________________
consensus                             ATAGACTTACAAGCATAGTCAACACCAGTGGAAATCTCAGTGCA
 
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JMSF048F19+           GAGATAAGTGGTGCCAAATTGACCTTGACCCAACTTACGGCCCAGTGTGTAAAGATCACG
                      ____________________________________________________________
consensus             GAGATAAGTGGTGCCAAATTGACCTTGACCCAACTTACGGCCCAGTGTGTAAAGATCACG
 
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JMSF048F19+           GATGTTAGCGGTCTTGTGACCTAGGACGTGATAGGCCTGGTTATTGGTGGAACGATACAT
                      ____________________________________________________________
consensus             GATGTTAGCGGTCTTGTGACCTAGGACGTGATAGGCCTGGTTATTGGTGGAACGATACAT
 
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JMSF048F19+           GTTTTCCTTTTTGGGATAAAGTATAGGGATGCGTTGGTCGTCTTTGTTGGGGTTGGGGTT
                      ____________________________________________________________
consensus             GTTTTCCTTTTTGGGATAAAGTATAGGGATGCGTTGGTCGTCTTTGTTGGGGTTGGGGTT
 
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JMSF001J17+             GGTTGGGGTGGGTATCCTTGGGGCTCAGCCTAGTAGGGGAGGAGAAATTATCAGAGTA
JMSF048F19+           GGGGTTGGGGTGGGTATCCTTGGGGCTCAGCCTAGTAGGGGAGGAGAAATTATCAGAGTA
JMSF003I10+             GGTTGGGGTGGGTATCCTTGGGGCTCAGCCTAGTAGGGGAGGAGAAATTATCAGAGTA
                      ____________________________________________________________
consensus             GGGGTTGGGGTGGGTATCCTTGGGGCTCAGCCTAGTAGGGGAGGAGAAATTATCAGAGTA
 
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JMSF001J17+           AGAGTTAGAACGGGCGGAAGAAGGGTTACAGTTAGAAATGGAATGATCTTCGGGCTGTGT
JMSF048F19+           AGAGTTAGAACGGGCGGAAGAAGGGTTACAGTTAGAAATGGAATGATCTTCGGGCTGTGT
JMSF003I10+           AGAGTTAGAACGGGCGGAAGAAGGGTTACAGTTAGAAATGGAATGATCTTCGGGCTGTGT
                      ____________________________________________________________
consensus             AGAGTTAGAACGGGCGGAAGAAGGGTTACAGTTAGAAATGGAATGATCTTCGGGCTGTGT
 
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JMSF001J17+           GTAGCCCTGAAAATGCTTGCTTCCGAAAGATCCACGGCATGTGTTGCCCATGAAACAATC
JMSF048F19+           GTAGCCCTGAAAATGCTTGCTTCCGAAAGATCCACGGCATGTGTTGCCCATGAAACAATC
JMSF003I10+           GTAGCCCTGAAAATGCTTGCTTCCGAAAGATCCACGGCATGTGTTGCCCATGAAACAATC
                      ____________________________________________________________
consensus             GTAGCCCTGAAAATGCTTGCTTCCGAAAGATCCACGGCATGTGTTGCCCATGAAACAATC
 
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JMSF001J17+           ACAAGTCCCCCTCTCAGCTCAGCAACTTCACAACTGGCAATTCTTTCGTCATCCAAGGTT
JMSF048F19+           ACAAGTCCCCCTCTCAGCTCAGCAACTTCACAACTGGCAATTCTTTCGTCATCCAAGGTT
JMSF003I10+           ACAAGTCCCCCTCTCAGCTCAGCAACTTCACAACTGGCAATTCTTTCGTCATCCAAGGTT
                      ____________________________________________________________
consensus             ACAAGTCCCCCTCTCAGCTCAGCAACTTCACAACTGGCAATTCTTTCGTCATCCAAGGTT
 
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JMSF001J17+           TTGTATGAGAAGAATGAATAATTAAGCGGGGGGGATGGAAGGATCAAATCTCTGAGCATA
JMSF048F19+           TTGTATGAGAAGAATGAATAATTAAGCGGGGGGGATGGAAGGATCAAATCTCTGAGCATA
JMSF003I10+           TTGTATGAGAAGAATGAATAATTAAGCGGGGGGGATGGAAGGATCAAATCTCTGAGCATA
                      ____________________________________________________________
consensus             TTGTATGAGAAGAATGAATAATTAAGCGGGGGGGATGGAAGGATCAAATCTCTGAGCATA
 
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JMSF001J17+           GAGTTCTGTTATGTGATGATCGCGCTGGAGACTGACGACGGCGAGACGGCGAGACGACGA
JMSF048F19+           GAGTTCTGTTATGTGATGATCGCGCTGGAGACTGACGACGGCGAGACGGCGAGACGACGA
JMSF003I10+           GAGTTCTGTTATGTGATGATCGCGCTGGAGACTGACGACGGCGAGACGGCGAGACGACGA
                      ____________________________________________________________
consensus             GAGTTCTGTTATGTGATGATCGCGCTGGAGACTGACGACGGCGAGACGGCGAGACGACGA
 
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JMSF001J17+           CAAG                                                        
JMSF048F19+           CAAGCATGGCGAGGAGGAGGAGAGTAAATGGATGATATTTCAAAATTTCACAATTAATTC
JMSF003I10+           CAAGCATGGCGAGGAGGAGGAGAGTAAATGGATGATATTTCAAAATTTCACAATTAATTC
                      ____________________________________________________________
consensus             CAAGCATGGCGAGGAGGAGGAGAGTAAATGGATGATATTTCAAAATTTCACAATTAATTC