Contig 004926:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS035G01Sequence606004926 (7)ref|XP_009772099.1|9e-32PREDICTED: systemin receptor SR160 [Nicotiana sylvestris]
JMFS079G02Sequence617004926 (7)ref|XP_009772099.1|2e-35PREDICTED: systemin receptor SR160 [Nicotiana sylvestris]
JMFS090H02Sequence623004926 (7)gb|ABR18799.1|2e-35brassinosteroid insensitive 1 [Nicotiana tabacum]
JMFS115G12Sequence622004926 (7)ref|XP_009772099.1|5e-39PREDICTED: systemin receptor SR160 [Nicotiana sylvestris]
JMFS122B06Sequence568004926 (7)ref|XP_009772099.1|9e-31PREDICTED: systemin receptor SR160 [Nicotiana sylvestris]
JMFS136H01Sequence579004926 (7)ref|XP_009772099.1|2e-36PREDICTED: systemin receptor SR160 [Nicotiana sylvestris]
JMSF003D23Sequence392004926 (7)ref|XP_009772099.1|5e-05PREDICTED: systemin receptor SR160 [Nicotiana sylvestris]749000407 (5)pdb|4OA2|A9e-102Chain A, Crystal Structure Of The Bri1 Kinase Domain (865-1196) In Complex With

Alignment

This contig is upended


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JMFS115G12+                                                               AGCCTTGA
                      ____________________________________________________________
consensus                                                                 AGCCTTGA
 
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JMFS136H01+                            AGGCTATAGATATCAGAAACAGGGCCAGAGATGGAGTTTTCAG
JMFS115G12+           GGTTATAACACCCACCAAGGCTATAGATATCAGAAACAGGGCCAGAGATGGAGTTTTCAG
JMFS079G02+                            AGGCTATAGATATCAGAAACAGGGCCAGAGATGGAGTTTTCAG
JMFS090H02+                            AGGCTATAGATATCAGAAACAGGGCCAGAGATGGAGTTTTCAG
JMFS122B06+                                                         GATGGAGTTTTCAG
JMFS035G01+                                                   GCCAGAGATGGAGTTTTCAG
                      ____________________________________________________________
consensus             GGTTATAACACCCACCAAGGCTATAGATATCAGAAACAGGGCCAGAGATGGAGTTTTCAG
 
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JMFS136H01+           CTAGATCTAAGTAGCTGAGAGAAGCCCCACAATGGGATTTGGAGGCAGAAGTGAGTGAGC
JMFS115G12+           CTAGATCTAAGTAGCTGAGAGAAGCCCCACAATGGGATTTGGAGGCAGAAGTGAGTGAGC
JMFS079G02+           CTAGATCTAAGTAGCTGAGAGAAGCCCCACAATGGGATTTGGAGGCAGAAGTGAGTGAGC
JMFS090H02+           CTAGATCTAAGTAGCTGAGAGAAGCCCCACAATGGGATTTGGAGGCAGAAGTGAGTGAGC
JMFS122B06+           CTAGATCTAAGTAGCTGAGAGAAGCCCCACAATGGGATTTGGAGGCAGAAGTGAGTGAGC
JMFS035G01+           CTAGATCTAAGTAGCTGAGAGAAGCCCCACAATGGGATTTGGAGGCAGAAGTGAGTGAGC
                      ____________________________________________________________
consensus             CTAGATCTAAGTAGCTGAGAGAAGCCCCACAATGGGATTTGGAGGCAGAAGTGAGTGAGC
 
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JMFS136H01+           CACTCAGATTGGTGTTCTTCAACACAAGCGTCTCCAAGCTCTCAAGACCCAGCAAGAAAG
JMFS115G12+           CACTCAGATTGGTGTTCTTCAACACAAGCGTCTCCAAGCTCTCAAGACCCAGCAAGAAAG
JMFS079G02+           CACTCAGATTGGTGTTCTTCAACACAAGCGTCTCCAAGCTCTCAAGACCCAGCAAGAAAG
JMFS090H02+           CACTCAGATTGGTGTTCTTCAACACAAGCGTCTCCAAGCTCTCAAGACCCAGCAAGAAAG
JMFS122B06+           CACTCAGATTGGTGTTCTTCAACACAAGCGTCTCCAAGCTCTCAAGACCCAGCAAGAAAG
JMFS035G01+           CACTCAGATTGGTGTTCTTCAACACAAGCGTCTCCAAGCTCTCAAGACCCAGCAAGAAAG
                      ____________________________________________________________
consensus             CACTCAGATTGGTGTTCTTCAACACAAGCGTCTCCAAGCTCTCAAGACCCAGCAAGAAAG
 
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JMFS136H01+           AAGAAACCACCCCAAAATCTACGCTGAGCATAGTGCTTCCGAGATCTATAGAAGACACCC
JMFS115G12+           AAGAAACCACCCCAAAATCTACGCTGAGCATAGTGCTTCCGAGATCTATAGAAGACACCC
JMFS079G02+           AAGAAACCACCCCAAAATCTACGCTGAGCATAGTGCTTCCGAGATCTATAGAAGACACCC
JMFS090H02+           AAGAAACCACCCCAAAATCTACGCTGAGCATAGTGCTTCCGAGATCTATAGAAGACACCC
JMFS122B06+           AAGAAACCACCCCAAAATCTACGCTGAGCATAGTGCTTCCGAGATCTATAGAAGACACCC
JMFS035G01+           AAGAAACCACCCCAAAATCTACGCTGAGCATAGTGCTTCCGAGATCTATAGAAGACACCC
                      ____________________________________________________________
consensus             AAGAAACCACCCCAAAATCTACGCTGAGCATAGTGCTTCCGAGATCTATAGAAGACACCC
 
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JMFS136H01+           TAGAGGCCTTGCATGTAACACCAGTGAAGCTACATGGGTTTGCGGAGGATACCCAGTTTT
JMFS115G12+           TGGAGGCCTTGCATGTAACACCAGTGAAGCTACATGGGTTTGCGGAGGATACCCAGTTTT
JMFS079G02+           TGGAAGCCTTGCATGTAACACCAGTGAAGCTACATGGGTTTGCGGAGGATACCCAGTTTT
JMFS090H02+           TGGAGGCCTTGCATGTAACACCAGTGAAGCTACATGGGTTTGCGGAGGATACCCAGTTTT
JMFS122B06+           TGGAGGCCTTGCATGTAACACCAGTGAAGCTACATGGGTTTGCGGAGGATACCCAGTTTT
JMFS035G01+           TGGAGGCCTTGCATGTAACACCAGTGAAGCTACATGGGTTTGCGGAGGATACCCAGTTTT
JMSF003D23+                                       GCTACATGGGTTTGCGGAGGATACCCAGTTTT
                      ____________________________________________________________
consensus             TGGAGGCCTTGCATGTAACACCAGTGAAGCTACATGGGTTTGCGGAGGATACCCAGTTTT
 
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JMFS136H01+           GTAGCGGAGTTTGGTCAGGAATGGTGGCTTTGAAGGAAAGTAGCTGCTGTGAGTCCCTGA
JMFS115G12+           GTAGCGGAGTTTGGTCAGGAATGGTGGCTTTGAAGGACAGTAGCTGCTGTGAGTCCCTGA
JMFS079G02+           GTAGCGGAGTTTGGTCAGGAATGGTGGCTTTGAAGGACAGTAGCTGCTGTGAGTCCCTGA
JMFS090H02+           GTAGCGGAGTTTGGTCAGGAATGGTGGCTTTGAAGGACAGTAGCTGCTGTGAGTCCCTGA
JMFS122B06+           GTAGCGGAGTTTGGTCAGGAATGGTGGCTTTGAAGGACAGTAGCTGCTGTGAGTCCCTGA
JMFS035G01+           GTAGCGGAGTTTGGTCAGGAATGGTGGCTTTGAAGGACAGTAGCTGCTGTGAGTCCCTGA
JMSF003D23+           GTAGCGGAGTTTGGTCAGGAATGGTGGCTTTGANGGACAGTAGCTGCTGTGAGTCCCTGA
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consensus             GTAGCGGAGTTTGGTCAGGAATGGTGGCTTTGAAGGACAGTAGCTGCTGTGAGTCCCTGA
 
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JMFS136H01+           AGAGCCCATTCAGCGGAGGAGCAGCTGAAGCTGGAGGGAGAAAGAAGATGAACACCACCA
JMFS115G12+           AGAGCCCATTCAGCGGAGGAGCAGCTGAAGCTGGAGGGAGAAAGAAGATGAACACCACCA
JMFS079G02+           AGAGCCCATTCAGCGGAGGAGCAGCTGAAGCTGGAGGGAGAAAGAAGATGAACACCACCA
JMFS090H02+           AGAGCCCATTCAGCGGAGGAGCAGCTGAAGCTGGAGGGAGAAAGAAGATGAACACCACCA
JMFS122B06+           AGAGCCCATTCAGCGGAGGAGCAGCTGAAGCTGGAGGGAGAAAGAAGATGAACACCACCA
JMFS035G01+           AGAGCCCATTCAGCGGAGGAGCAGCTGAAGCTGGAGGGAGAAAGAAGATGAACACCACCA
JMSF003D23+           AGAGCCCATTCAGCGGAGGAGCAGCTGAAGCTGGAGGGAGAAAGAAGATGAACACCACCA
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consensus             AGAGCCCATTCAGCGGAGGAGCAGCTGAAGCTGGAGGGAGAAAGAAGATGAACACCACCA
 
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JMFS136H01+           GAAGAAGAAGAAGAAGAAAAACACAGATTGGCTGCACGGCGAAGCAGATAAAGAAACTGT
JMFS115G12+           GAAGAAGAAGAAGAAGAAAAACACAGATTGGCTGCACGGCGAAGCAGATAAAGAAACTGT
JMFS079G02+           GAAGAAGAAGAAGAAGAAAAACACAGATTGGCTGCACGGCGAAGCAGATAAAGAAACTGT
JMFS090H02+           GAAGAAGAAGAAGAAGAAAAACACAGATTGGCTGCACGGCGAAGCAGATAAAGAAACTGT
JMFS122B06+           GAAGAAGAAGAAGAAGAAAAACACAGATTGGCTGCACGGCGAAGCAGATAAAGAAACTGT
JMFS035G01+           GAAGAAGAAGAAGAAGAAAAACACAGATTGGCTGCACGGCGAAGCAGATAAAGAAACTGT
JMSF003D23+           GAAGAAGAAGAAGAAGAAAAACACAGATTGGCTGCACGGCGAAGCAGATAAAGAAACTGT
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consensus             GAAGAAGAAGAAGAAGAAAAACACAGATTGGCTGCACGGCGAAGCAGATAAAGAAACTGT
 
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JMFS136H01+           TGTAGAAAAGACTAGTACTCTTAGCTTTCATCTTTGGCTTCTGCTATTTTCTTATGCTTT
JMFS115G12+           TGTAGAAAAGACTAGTACTCTTAGCTTTCATCTTTGGCTTCTGCTATTTTCTTATGCTTT
JMFS079G02+           TGTAGAAAAGACTAGTACTCTTAGCTTTCATCTTTGGCTTCTGCTATTTTCTTATGCTTT
JMFS090H02+           TGTAGAAAAGACTAGTACTCTTAGCTTTCATCTTTGGCTTCTGCTATTTTCTTATGCTTT
JMFS122B06+           TGTAGAAAAGACTAGTACTCTTAGCTTTCATCTTTGGCTTCTGCTATTTTCTTATGCTTT
JMFS035G01+           TGTAGAAAAGACTAGTACTCTTAGCTTTCATCTTTGGCTTCTGCTATTTTCTTATGCTTT
JMSF003D23+           TGTAGAAAAGACTAGTACTCTTAGCTTTCATCTTTGGCTTCTGCTATTTTCTTATGCTTT
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consensus             TGTAGAAAAGACTAGTACTCTTAGCTTTCATCTTTGGCTTCTGCTATTTTCTTATGCTTT
 
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JMFS136H01+           TGGCTCTATCTTTTCATGACCTCCATTTGCAAGAAGAGAGAGAGAGAGCA          
JMFS115G12+           TGGCTCTATCTTTTCATGACCTCCATTTGCAAGAAGAGAGAGAGAGAGCAGAGGTGGTGT
JMFS079G02+           TGGCTCTATCTTTTCATGACCTCCATTTGCAAGAAGAGAGAGAGAGAGCAGAGGTGGTGT
JMFS090H02+           TGGCTCTATCTTTTCATGACCTCCATTTGCAAGAAGAGAGAGAGAGAGCAGAGGTGGTGT
JMFS122B06+           TGGCTCTATCTTTTCATGACCTCCATTTGCAAGAAGAGAGAGAGAGAGCAGAGGTGGTGT
JMFS035G01+           TGGCTCTATCTTTTCATGACCTCCATTTGCAAGAAGAGAGAGAGAGAGCAGAGGTGGTGT
JMSF003D23+           TGGCTCTATCTTTTCATGACCTCCATTTGCAAGAAGAGAGAGAGAGAGCAGAGGTGGTGT
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consensus             TGGCTCTATCTTTTCATGACCTCCATTTGCAAGAAGAGAGAGAGAGAGCAGAGGTGGTGT
 
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JMFS115G12+           TTTAACAGACTAGA                                              
JMFS079G02+           TTTAACAGACTAGAGCAGATAGAGAGAGATA                             
JMFS090H02+           TTTAACAGACTAGAGCAGATAGAGAGAGATAGAGAGAAGG                    
JMFS122B06+           TTTAACAGACTAGA                                              
JMFS035G01+           TTTAACAGACTAGAGCAGATAGAGAGAGATAGAGAGAAGG                    
JMSF003D23+           TTTAACAGACTAGAGCAGATAGAGAGAGATAGAGAGAAGGATGAAGAGAGTCAAAAGGTC
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consensus             TTTAACAGACTAGAGCAGATAGAGAGAGATAGAGAGAAGGATGAAGAGAGTCAAAAGGTC