Contig 004920:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002K19Sequence308004920 (2)762004920 (2)ref|XP_009775665.1|3e-49PREDICTED: tetraspanin-19 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF002K19-                                                                   GAT
                      ____________________________________________________________
consensus                                                                      GAT
 
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rJMSF002K19-          GATATTATATAACAGGTTAAAACAAAATGATGATGATGATGAAAAATACATACCAACTTA
                      ____________________________________________________________
consensus             GATATTATATAACAGGTTAAAACAAAATGATGATGATGATGAAAAATACATACCAACTTA
 
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rJMSF002K19-          AGCTAATACATAGTATGCCATAGAAACTGGACATCCTTTTTTATTTTCATGTCTCTGCAG
                      ____________________________________________________________
consensus             AGCTAATACATAGTATGCCATAGAAACTGGACATCCTTTTTTATTTTCATGTCTCTGCAG
 
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rJMSF002K19-          TTCCTGATGATCATATTCTTACTAAATTTACCTTGCTGTTAATCCCGATATTAAAGAGTC
                      ____________________________________________________________
consensus             TTCCTGATGATCATATTCTTACTAAATTTACCTTGCTGTTAATCCCGATATTAAAGAGTC
 
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rJMSF002K19-          ATGCTTGCTTGGATCCACAGGCAGGGTCGATATCAATAACATGAGAAGGTTGAGCAACAT
                      ____________________________________________________________
consensus             ATGCTTGCTTGGATCCACAGGCAGGGTCGATATCAATAACATGAGAAGGTTGAGCAACAT
 
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rJMSF002K19-          AATTTTCCAAGAGTGGGGCTATATCCAGAGCATAATCTTGACGGCCCTCAAGGTATCCGG
                      ____________________________________________________________
consensus             AATTTTCCAAGAGTGGGGCTATATCCAGAGCATAATCTTGACGGCCCTCAAGGTATCCGG
 
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rJMSF002K19-          GTTCAAGGGCTTTCAAAATCAGTGCCAGCGATGCACACACTGCCGGGACAGTCACTGCTA
                      ____________________________________________________________
consensus             GTTCAAGGGCTTTCAAAATCAGTGCCAGCGATGCACACACTGCCGGGACAGTCACTGCTA
 
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rJMSF002K19-          ACAGGCCAATCCATTTGCATATCTCGTAGTTATCTTCAATAAAATCTTTGATCTTATCAA
                      ____________________________________________________________
consensus             ACAGGCCAATCCATTTGCATATCTCGTAGTTATCTTCAATAAAATCTTTGATCTTATCAA
 
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rJMSF002K19-          TGTTCCCAGTTGTGTCCTTTGGAAAGCCCTCTTCCCAGTTTTTGTTTAAGAATACATTTG
                      ____________________________________________________________
consensus             TGTTCCCAGTTGTGTCCTTTGGAAAGCCCTCTTCCCAGTTTTTGTTTAAGAATACATTTG
 
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rJMSF002K19-          CCACCAGGTTAGTTTCCAGAAGGTGAAAGATGTAGATGAAAAACACGTAAGAGTACAAAG
                      ____________________________________________________________
consensus             CCACCAGGTTAGTTTCCAGAAGGTGAAAGATGTAGATGAAAAACACGTAAGAGTACAAAG
 
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rJMSF002K19-          AACAAGTATTACAAGTCTCGGCAGCAATATGACCTGTCCAGGCGATCAAATCCACAGAGA
JMSF002K19+                                                               CACAGAGA
                      ____________________________________________________________
consensus             AACAAGTATTACAAGTCTCGGCAGCAATATGACCTGTCCAGGCGATCAAATCCACAGAGA
 
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rJMSF002K19-          AGCCCACACCAATAGTAGTGTAGATGAACCAAAAGCAAAGGGCATCATCCGAGCAGGTCA
JMSF002K19+           AGCCCACACCAATAGTAGTGTAGATGAACCAAAAGCAAAGGGCATCATCCGAGCAGGTCA
                      ____________________________________________________________
consensus             AGCCCACACCAATAGTAGTGTAGATGAACCAAAAGCAAAGGGCATCATCCGAGCAGGTCA
 
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rJMSF002K19-          CGTGCGTTTGCAAGGTGGTAAACATCCAGCANCCATACAAGATCATGAGGAGCCCTGAGA
JMSF002K19+           CGTGCGTTTGCAAGGTGGTAAACATCCAGCAACCATACAAGATCATGAGGAGCCCTGAGA
                      ____________________________________________________________
consensus             CGTGCGTTTGCAAGGTGGTAAACATCCAGCAACCATACAAGATCATGAGGAGCCCTGAGA
 
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rJMSF002K19-          GACCTACCAGCGAATTCACCACCTTCAGCATGTGCTGGA                     
JMSF002K19+           GACCTACCAGCGAATTCACCACCTTCAGCATGTGCTGGATGCAGCTCCGAACTATATCCA
                      ____________________________________________________________
consensus             GACCTACCAGCGAATTCACCACCTTCAGCATGTGCTGGATGCAGCTCCGAACTATATCCA
 
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JMSF002K19+           TTGCCAATTTTTGAACGCCCAGATGCGATTAGGATGAATTGGAGACTGATCGAAGAAGAG
                      ____________________________________________________________
consensus             TTGCCAATTTTTGAACGCCCAGATGCGATTAGGATGAATTGGAGACTGATCGAAGAAGAG
 
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JMSF002K19+           ACCCTAACCCTGGGAGAAGAGAATCGGAGTGAAATGCGAGGAACGAGTGAATATAGTGTC
                      ____________________________________________________________
consensus             ACCCTAACCCTGGGAGAAGAGAATCGGAGTGAAATGCGAGGAACGAGTGAATATAGTGTC