Contig 004918:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023A03Sequence487004918 (3)ref|XP_002524936.1|1e-44conserved hypothetical protein [Ricinus communis] gb|EEF37433.1| conserved hypot802004918 (3)ref|XP_007047413.1|6e-60Maternal effect embryo arrest 59, putative isoform 1 [Theobroma cacao] gb|EOX91
JMSF002D12Sequence331004918 (3)ref|XP_007047415.1|4e-20Maternal effect embryo arrest 59, putative isoform 3, partial [Theobroma cacao]742017049ref|XP_006339842.1|112PREDICTED: uncharacterized protein LOC102601541 [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF023A03-                       TTGCAGAGAATCTAGACGACATGTTTAGATATTCAAACACAATTACA
                      ____________________________________________________________
consensus                          TTGCAGAGAATCTAGACGACATGTTTAGATATTCAAACACAATTACA
 
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rJMFF023A03-          ACAACAGAACCTTGACGACATTATAAGTACCACCATTTGGTGGCACAGATCAAGAAATGA
                      ____________________________________________________________
consensus             ACAACAGAACCTTGACGACATTATAAGTACCACCATTTGGTGGCACAGATCAAGAAATGA
 
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rJMFF023A03-          GAATGTTGGGATTCCAACTCATATCTAATTACTAAATATTAAAGCAAATCTCTCACTTTT
                      ____________________________________________________________
consensus             GAATGTTGGGATTCCAACTCATATCTAATTACTAAATATTAAAGCAAATCTCTCACTTTT
 
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rJMFF023A03-          TATTCACTTCTTTTTTTATTCTCTGCTTCTAGATGACTCGATCTGATTCACCCTAGAGTA
                      ____________________________________________________________
consensus             TATTCACTTCTTTTTTTATTCTCTGCTTCTAGATGACTCGATCTGATTCACCCTAGAGTA
 
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rJMFF023A03-          CACTCGTAGTTGGCCGGTGGTCTAGTCACCCTCGCTCCGATTTGGCTTGGAAGAAGAAAA
                      ____________________________________________________________
consensus             CACTCGTAGTTGGCCGGTGGTCTAGTCACCCTCGCTCCGATTTGGCTTGGAAGAAGAAAA
 
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rJMFF023A03-          CTGGACCTGATCTTCAACGCTGGGAATCCAATCATTAGTTCCAGGATTAGTCTTGAACAC
                      ____________________________________________________________
consensus             CTGGACCTGATCTTCAACGCTGGGAATCCAATCATTAGTTCCAGGATTAGTCTTGAACAC
 
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rJMFF023A03-          TGCAGCTTTGAATCCATTGCTGCAGTTTTCTTGGCCTTGGTTCAACTGAAACTCGTATCC
JMFF023A03+                                                TGGTTCAACTGAAACTCGTATCC
                      ____________________________________________________________
consensus             TGCAGCTTTGAATCCATTGCTGCAGTTTTCTTGGCCTTGGTTCAACTGAAACTCGTATCC
 
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rJMFF023A03-          GTTTTCACCACCCACCTTTATGAACCCAGTTCCCGTCGTATGATGCTGCTTGTCAATAGA
JMFF023A03+           GTTTTCACCACCCACCTTTATGAACCCAGTTCCCGTCGTATGATGCTGCTTGTCAATAGA
                      ____________________________________________________________
consensus             GTTTTCACCACCCACCTTTATGAACCCAGTTCCCGTCGTATGATGCTGCTTGTCAATAGA
 
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rJMFF023A03-          AACCAGCTCATCGTAATAGTGAGTCTCTACGAATTCCTCTTGCTCCACTTTATCAGTTTC
JMFF023A03+           AACCAGCTCATCGTAATAGTGAGTCTCTACGAATTCCTCTTGCTCCACTTTATCAGTTTC
                      ____________________________________________________________
consensus             AACCAGCTCATCGTAATAGTGAGTCTCTACGAATTCCTCTTGCTCCACTTTATCAGTTTC
 
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rJMFF023A03-          TAAAAATACAGCTTGCGATCGGAGGGATTGGAGCTTATCAAGTTCAGGAATAGGGATGTC
JMFF023A03+           TAAAAATACAGCTTGCGATCGGAGGGATTGGAGCTTATCAAGTTCAGGAATAGGGATGTC
JMSF002D12+                                        GGAGCTTATCAAGTTCAGGAATAGGGATGTC
                      ____________________________________________________________
consensus             TAAAAATACAGCTTGCGATCGGAGGGATTGGAGCTTATCAAGTTCAGGAATAGGGATGTC
 
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rJMFF023A03-          TCCGGCGGGCATTGGGAGTGATGAATCGGGCTCGCTCCGGTTAGGTTTGGCGGGTCTTTT
JMFF023A03+           TCCGGCGGGCATTGGGAGTGATGAATCGGGCTCGCTCCGGTTAGGTTTGGCGGGTCTTTT
JMSF002D12+           TCCGGCGGGCATTGGGAGTGATGAATCGGGCTCGCTCCGGTTAGGTTTGGCGGGTCTTTT
                      ____________________________________________________________
consensus             TCCGGCGGGCATTGGGAGTGATGAATCGGGCTCGCTCCGGTTAGGTTTGGCGGGTCTTTT
 
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rJMFF023A03-          CGGGGCGAGGGCGTCGAATTGAGCTCTGACTTGCTCGGCGATCTGAAGCTGCTGATCGGG
JMFF023A03+           CGGGGCGAGGGCGTCGAATTGAGCTCTGACTTGCTCGGCGATCTGAAGCTGCTGATCGGG
JMSF002D12+           CGGGGCGAGGGCGTCGAATTGAGCTCTGACTTGCTCGGCGATCTGAAGCTGCTGATCGGG
                      ____________________________________________________________
consensus             CGGGGCGAGGGCGTCGAATTGAGCTCTGACTTGCTCGGCGATCTGAAGCTGCTGATCGGG
 
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rJMFF023A03-          ATCTAAAATCTCGTCGCTCCGGCTGGGTTTTGACACCACCCGTCGTCCCACCATGGCTGA
JMFF023A03+           ATCTAAAATCTCGTCGCTCCGGCTGGGTTTTGACACCACCCGTCGTCCCACCATGGCTGA
JMSF002D12+           ATCTAAAATCTCGTCGCTCCGGCTGGGTTTTGACACCACCCGTCGTCCCACCATGGCTGA
                      ____________________________________________________________
consensus             ATCTAAAATCTCGTCGCTCCGGCTGGGTTTTGACACCACCCGTCGTCCCACCATGGCTGA
 
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rJMFF023A03-          CGTATCGACCAAATGACTATGCGGGTAACTGCCGC                         
JMFF023A03+           CGTATCGACCAAATGACTATGCGGTTAACTGCCGCCGATTCTCGGAAAGGGAAGACGACT
JMSF002D12+           CGTATCGACCAAATGACTATGCGGTTAACTGCCGCCGATTCTCGGAAAGGGAAGACGACT
                      ____________________________________________________________
consensus             CGTATCGACCAAATGACTATGCGGTTAACTGCCGCCGATTCTCGGAAAGGGAAGACGACT
 
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JMFF023A03+           AATATTTTTTTCTCCTTCAGCTGTCGCAGTACAGTGTTAAGAAT                
JMSF002D12+           AATATTTTTTTCTCCTTCAGCTGTCGCAGTACAGTGTTAAGAATTCTGGAATTTTCCTCA
                      ____________________________________________________________
consensus             AATATTTTTTTCTCCTTCAGCTGTCGCAGTACAGTGTTAAGAATTCTGGAATTTTCCTCA