Contig 004916:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022H14Sequence519004916 (4)ref|XP_010659828.1|2e-06PREDICTED: probable E3 ubiquitin-protein ligase LUL3 [Vitis vinifera]125011060 (3)
JMFS056H03Sequence627004916 (4)emb|CDP19876.1|5e-16unnamed protein product [Coffea canephora]
JMSF002A20Sequence309004916 (4)775011060 (3)ref|XP_009768134.1|2e-104PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Nicotiana sylv
JMSF012H11Sequence495004916 (4)717011060 (3)ref|XP_009768134.1|1e-104PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Nicotiana sylv

Alignment

This contig is upended


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JMFS056H03+                                              CTCAATCAAATATCAATTTAAACAT
                      ____________________________________________________________
consensus                                                CTCAATCAAATATCAATTTAAACAT
 
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JMFS056H03+           CANAGTTACAATAAAACAAATTCAAAATTATACCTTCCATCCACCAAGGCATCGAAGACA
                      ____________________________________________________________
consensus             CANAGTTACAATAAAACAAATTCAAAATTATACCTTCCATCCACCAAGGCATCGAAGACA
 
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JMFS056H03+           AATGACACCAAATGGCAATCCTTATTGTTCTCATCCACTTCCAGCTTTATAGTATCCTTG
JMFF022H14+                                       TCTCATCCACTTCCAGCTTTATAGTATCCTTG
                      ____________________________________________________________
consensus             AATGACACCAAATGGCAATCCTTATTGTTCTCATCCACTTCCAGCTTTATAGTATCCTTG
 
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JMFS056H03+           TGGACATTTATATCATTCTTGATCTTCTTCGCGTTCTGGTGATCCACATATGGCACAGCC
JMFF022H14+           TGGACATTTATATCATTCTTGATCTTCTTCGCGTTCTGGTGATCCACATATGGCACAGCC
JMSF012H11+                 TTTATATCATTCTTGATCTTCTTCGCGTTCTGGTGATCCACATATGGCACAGCC
                      ____________________________________________________________
consensus             TGGACATTTATATCATTCTTGATCTTCTTCGCGTTCTGGTGATCCACATATGGCACAGCC
 
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JMFS056H03+           GGCAGAGGCGGCGGCACATGCTGCGGGGGGCGGTAACCGGACCAAGCGTTAGGTAGGTAA
JMFF022H14+           GGCAGAGGCGGCGGCACATGCTGCGGGGGGCGGTAACCGGACCAAGCGTTAGGTAGGTAA
JMSF012H11+           GGCAGAGGCGGCGGCACATGCTGCGGGGGGCGGTAACCGGACCAAGCGTTAGGTAGGTAA
                      ____________________________________________________________
consensus             GGCAGAGGCGGCGGCACATGCTGCGGGGGGCGGTAACCGGACCAAGCGTTAGGTAGGTAA
 
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JMFS056H03+           TAGGGAGGATGATAACTGCTATGGTAGATCACAGGTCTGTTGGGGTAATTGTAGCCGTAA
JMFF022H14+           TAGGGAGGATGATAACTGCTATGGTAGATCACAGGTCTGTTGGGGTAATTGTAGCCGTAA
JMSF012H11+           TAGGGAGGATGATAACTGCTATGGTAGATCACAGGTCTGTTGGGGTAATTGTAGCCGTAA
                      ____________________________________________________________
consensus             TAGGGAGGATGATAACTGCTATGGTAGATCACAGGTCTGTTGGGGTAATTGTAGCCGTAA
 
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JMFS056H03+           TTGAACTGGCCGTTTGAGTGAGGCGGGTAAGGAGCAGGGATCAAGCAGTAAGGGTTTTGG
JMFF022H14+           TTGAACTGGCCGTTTGAGTGAGGCGGGTAAGGAGCAGGGATCAAGCAGTAAGGGTTTTGG
JMSF012H11+           TTGAACTGGCCGTTTGAGTGAGGCGGGTAAGGAGCAGGGATCAAGCAGTAAGGGTTTTGG
JMSF002A20+                                                              GGGTTTTGG
                      ____________________________________________________________
consensus             TTGAACTGGCCGTTTGAGTGAGGCGGGTAAGGAGCAGGGATCAAGCAGTAAGGGTTTTGG
 
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JMFS056H03+           GAGGGCGCAGAGTAGGGTGCGTTCGCTCCGTAAGAAAAGCTTGGGTTTGACGGCGGCGGC
JMFF022H14+           GAGGGCGCAGAGTAGGGTGCGTTCGCTCCGTAAGAAAAGCTTGGGTTTGACGGCGGCGGC
JMSF012H11+           GAGGGCGCAGAGTAGGGTGCGTTCGCTCCGTAAGAAAAGCTTGGGTTTGACGGCGGCGGC
JMSF002A20+           GAGGGCGCAGAGTAGGGTGCGTTCGCTCCGTAAGAAAAGCTTGGGTTTGACGGCGGCGGC
                      ____________________________________________________________
consensus             GAGGGCGCAGAGTAGGGTGCGTTCGCTCCGTAAGAAAAGCTTGGGTTTGACGGCGGCGGC
 
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JMFS056H03+           GCGAGAGATGGGGGAACGGATGAAGATGATGGTGGTTGCTGTGGCGGCGGCGGCGGCGGA
JMFF022H14+           GCGAGAGATGGGGGAACGGATGAAGATGATGGTGGTTGCTGTGGCGGCGGCGGCGGCGGA
JMSF012H11+           GCGAGAGATGGGGGAACGGATGAAGATGATGGTGGTTGCTGTGGCGGCGGCGGCGGCGGA
JMSF002A20+           GCGAGAGATGGGGGAACGGATGAAGATGATGGTGGTTGCTGTGGCGGCGGCGGCGGCGGA
                      ____________________________________________________________
consensus             GCGAGAGATGGGGGAACGGATGAAGATGATGGTGGTTGCTGTGGCGGCGGCGGCGGCGGA
 
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JMFS056H03+           AGTTGCGGGAGAGACGGTGGTGGAGGCTGATGCTGGTGGTGTTGTTGCCGTTTACTCAAC
JMFF022H14+           AGTTGCGGGAGAGACGGTGGTGGAGGCTGATGCTGGTGGTGTTGTTGCCGTTTACTCAAC
JMSF012H11+           AGTTGCGGGAGAGACGGTGGTGGAGGCTGATGCTGGTGGTGTTGTTGCCGTTTACTCAAC
JMSF002A20+           AGTTGCGGGAGAGACGGTGGTGGAGGCTGATGCTGGTGGTGTTGTTGCCGTTTACTCAAC
                      ____________________________________________________________
consensus             AGTTGCGGGAGAGACGGTGGTGGAGGCTGATGCTGGTGGTGTTGTTGCCGTTTACTCAAC
 
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JMFS056H03+           GAAATTCCCATTTCCCGGCGGTGGCGCGTGAGAGAGAGTGACGAAGAAAGCGAAGGATAC
JMFF022H14+           GAAATTCCCATTTCCCGGCGGTGGCGCGTGAGAGAGAGTGACGAAGAAAGCGAAGGATAC
JMSF012H11+           GAAATTCCCATTTCCCGGCGGTGGCGCGTGAGAGAGAGTGACGAAGAAAGCGAAGGATAC
JMSF002A20+           GAAATTCCCATTTCCCGGCGGTGGCGCGTGAGAGAGAGTGACGAAGAAAGCGAAGGATAC
                      ____________________________________________________________
consensus             GAAATTCCCATTTCCCGGCGGTGGCGCGTGAGAGAGAGTGACGAAGAAAGCGAAGGATAC
 
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JMFS056H03+           GT                                                          
JMFF022H14+           GT                                                          
JMSF012H11+           GTGTAATGAATGCTTAAGGC                                        
JMSF002A20+           GTGTAATGAATGCTTAAGGCGGAAGGAAGGAAAGTTGTAGTAAGATTTATGGAAATGTTC
                      ____________________________________________________________
consensus             GTGTAATGAATGCTTAAGGCGGAAGGAAGGAAAGTTGTAGTAAGATTTATGGAAATGTTC