| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017C16 | Sequence | 147 | 004911 (6) | 797 | 004086 (11) | ref|XP_009628300.1| | 3e-106 | PREDICTED: signal recognition particle 54 kDa protein 2 [Nicotiana tomentosifor | |||
| JMFF025I13 | Sequence | 156 | 004911 (6) | 663 | 004086 (11) | ref|XP_009628300.1| | 3e-71 | PREDICTED: signal recognition particle 54 kDa protein 2 [Nicotiana tomentosifor | |||
| JMFF040K12 | Sequence | 147 | 004911 (6) | 753 | 004086 (11) | ref|XP_009764811.1| | 9e-96 | PREDICTED: signal recognition particle 54 kDa protein 2 [Nicotiana sylvestris] | |||
| JMSF001M23 | Sequence | 147 | 004911 (6) | 682 | 004086 (11) | ref|XP_009628300.1| | 5e-97 | PREDICTED: signal recognition particle 54 kDa protein 2 [Nicotiana tomentosifor | |||
| JMSF017D13 | Sequence | 149 | 004911 (6) | 735 | 004086 (11) | ref|XP_009764811.1| | 5e-98 | PREDICTED: signal recognition particle 54 kDa protein 2 [Nicotiana sylvestris] | |||
| JMSF051I22 | Sequence | 145 | 004911 (6) | 729 | 004086 (11) | ref|XP_009764811.1| | 1e-115 | PREDICTED: signal recognition particle 54 kDa protein 2 [Nicotiana sylvestris] | |||
This contig is upended
. : . : . : . : . : . :
JMFF040K12+ AGAGAGAGAGAGAGAGAGAGAGA
JMFF017C16+ AGAGAGAGAGAGAGAGAGAGAGA
JMSF017D13+ GATANGAGAGAGAGAGAGAGAGAGAGAGA
JMSF051I22+ GAGAGAGAGAGAGAGAGAGA
JMSF001M23+ AGAGAGAGAGAGAGAGAGAGAGA
____________________________________________________________
consensus GATANGAGAGAGAGAGAGAGAGAGAGAGA
. : . : . : . : . : . :
JMFF040K12+ GAGAGAGAGAGAGAGAGAGAGAGAAATTTATGTCCCCGGCGCCGGCGATCAGGATGCGAC
JMFF025I13+ AAATTTATGTCCCCGGCGCCGGCGATCAGGATGCGAC
JMFF017C16+ GAGAGAGAGAGAGAGAGAGAGAGAAATTTATGTCCCCGGCGCCGGCGATCAGGATGCGAC
JMSF017D13+ GAGAGAGAGAGAGAGAGAGAGAGAAATTTATGTCCCCGGCGCCGGCGATCAGGATGCGAC
JMSF051I22+ GAGAGAGAGAGAGAGAGAGAGAGAAATTTATGTCCCCGGCGCCGGCGATCAGGATGCGAC
JMSF001M23+ GAGAGAGAGAGAGAGAGAGAGAGAAATTTATGTCCCCGGCGCCGGCGATCAGGATGCGAC
____________________________________________________________
consensus GAGAGAGAGAGAGAGAGAGAGAGAAATTTATGTCCCCGGCGCCGGCGATCAGGATGCGAC
. : . : . : . : . : . :
JMFF040K12+ CTCCTCCGACTCACAATATCTCCAGCCTCCGGCGCCCTGCCAATTAATTAAACTGCACT
JMFF025I13+ CTCCTCCGACTCACAATATCTCCAGCCTCCGGCGCCCTGCCAATTAATTAAACTG
JMFF017C16+ CTCCTCCGACTCACAATATCTCCAGCCTCCGGCGCCCTGCCAATTAATTAAACTGCACT
JMSF017D13+ CTCCTCCGACTCACAATATCTCCAGCCTCCGGCGCCCTGCCAATTAATTAAACTGCACT
JMSF051I22+ CTCCTCCGACTCACAATATCTCCAGCCTCCGGCGCCCTGCCAATTAATTAAACTGCACT
JMSF001M23+ CTCCTCCGACTCACAATATCTCCAGCCTCCGGCGCCCTGCCAATTAATTAAACTGCACTC
____________________________________________________________
consensus CTCCTCCGACTCACAATATCTCCAGCCTCCGGCGCCCTGCCAATTAATTAAACTGCACTC