Contig 004902:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS001B09Sequence634004902 (4)ref|XP_009592115.1|5e-66PREDICTED: conserved oligomeric Golgi complex subunit 3-like isoform X3 [Nicoti
JMFS015D09Sequence563004902 (4)ref|XP_009592115.1|2e-52PREDICTED: conserved oligomeric Golgi complex subunit 3-like isoform X3 [Nicoti
JMFS050C01Sequence259004902 (4)
JMFS169D10Sequence616004902 (4)ref|XP_009592115.1|3e-52PREDICTED: conserved oligomeric Golgi complex subunit 3-like isoform X3 [Nicoti

Alignment

This contig is upended


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JMFS001B09+                                                    TTCATCCACCTGATGAAGT
                      ____________________________________________________________
consensus                                                      TTCATCCACCTGATGAAGT
 
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JMFS015D09+                                                       ATGCTGATACTTCTCT
JMFS001B09+           ATTCCATCACATGTTGGTATCTGCTCAGTCAAGTTGTTAACATAATGCTGATACTTCTCT
JMFS169D10+                                                       ATGCTGATACTTCTCT
                      ____________________________________________________________
consensus             ATTCCATCACATGTTGGTATCTGCTCAGTCAAGTTGTTAACATAATGCTGATACTTCTCT
 
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JMFS015D09+           TCTGTCTCTGATTTCATGGCTGCCTCAAGATCCATAAACCATTTGTAGAACTGATTGGTG
JMFS001B09+           TCTGTCTCTGATTTCATGGCTGCCTCAAGATCCATAAACCATTTGTAGAACTGATTGGTG
JMFS169D10+           TCTGTCTCTGATTTCATGGCTGCCTCAAGATCCATAAACCATTTGTAGAACTGATTGGTG
                      ____________________________________________________________
consensus             TCTGTCTCTGATTTCATGGCTGCCTCAAGATCCATAAACCATTTGTAGAACTGATTGGTG
 
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JMFS015D09+           TTGACCAAGACAGTCTCAATGGCCCCACCATCCTCCATAGCATTTTGCTTTGCTGAATTG
JMFS001B09+           TTGACCAAGACAGTCTCAATGGCCCCACCATCCTCCATAGCATTTTGCTTTGCTGAATTG
JMFS169D10+           TTGACCAAGACAGTCTCAATGGCCCCACCATCCTCCATAGCATTTTGCTTTGCTGAATTG
                      ____________________________________________________________
consensus             TTGACCAAGACAGTCTCAATGGCCCCACCATCCTCCATAGCATTTTGCTTTGCTGAATTG
 
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JMFS015D09+           GAGAAACCATTGTGGTGTCCAAGAGCATGATCCTGAGACAAATTGGCAGGAAAAGGTCGC
JMFS001B09+           GAGAAACCATTGTGGTGTCCAAGAGCATGATCCTGAGACAAATTGGCAGGAAAAGGTCGC
JMFS169D10+           GAGAAACCATTGTGGTGTCCAAGAGCATGATCCTGAGACAAATTGGCAGGAAAAGGTCGC
                      ____________________________________________________________
consensus             GAGAAACCATTGTGGTGTCCAAGAGCATGATCCTGAGACAAATTGGCAGGAAAAGGTCGC
 
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JMFS015D09+           TCTGCAACGGCATGAGAAAGTGACTGAATAGCTGCTTGCTGCTGCTCTGTCAATGGAGCA
JMFS001B09+           TCTGCAACGGCATGAGAAAGTGACTGAATAGCTGCTTGCTGCTGCTCTGTCAATGGAGCA
JMFS169D10+           TCTGCAACGGCATGAGAAAGTGACTGAATAGCTGCTTGCTGCTGCTCTGTCAATGGAGCA
                      ____________________________________________________________
consensus             TCTGCAACGGCATGAGAAAGTGACTGAATAGCTGCTTGCTGCTGCTCTGTCAATGGAGCA
 
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JMFS015D09+           TTCTGTTCCCAAGTAGAAGCGAAGTTGTATCCTTTGGAAATGGCTTCCGACTTGGGTACA
JMFS050C01+                                            TTGGAAATGGCTTCCGTCTTGGGTTCA
JMFS001B09+           TTCTGTTCCCAAGTAGAAGCGAAGTTGTATCCTTTGGAAATGGCTTCCGACTTGGGTACA
JMFS169D10+           TTCTGTTCCCAAGTAGAAGCGAAGTTGTATCCTTTGGAAATGGCTTCCGACTTGGGTACA
                      ____________________________________________________________
consensus             TTCTGTTCCCAAGTAGAAGCGAAGTTGTATCCTTTGGAAATGGCTTCCGACTTGGGTACA
 
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JMFS015D09+           ACTGCGGTCCCTGCCGCTTTAGTCGTCGCCATTTTCCTTTTCTCTACTACGGAGGCAGCT
JMFS050C01+           AATGCGGTCCCTGCCGCATTAGTTGTCGCCATTTTCCTTTTGTGTACTACGGAGGCAGCA
JMFS001B09+           ACTGCGGTCCCTGCCGCTTTAGTCGTCGCCATTTTCCTTTTCTCTACTACGGAGGCAGCT
JMFS169D10+           ACTGCGGTCCCTGCCGCTTTAGTCGTCGCCATTTTCCTTTTCTCTACTACGGAGGCAGCT
                      ____________________________________________________________
consensus             ACTGCGGTCCCTGCCGCTTTAGTCGTCGCCATTTTCCTTTTCTCTACTACGGAGGCAGCT
 
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JMFS015D09+           CAATTTACGTCTTAGATTTAGTGGAACATTCACGTAGCAAACACGTAATACAGATATAGA
JMFS050C01+           CAATTTACGTCTTAGATTTAGTGGAACATTCACGTAGCAAACACGTAATACAGATATAGA
JMFS001B09+           CAATTTACGTCTTAGATTTAGTGGAACATTCACGTAGCAAACACGTAATACAGATATAGA
JMFS169D10+           CAATTTACGTCTTAGATTTAGTGGAACATTCACGTAGCAAACACGTAATACAGATATAGA
                      ____________________________________________________________
consensus             CAATTTACGTCTTAGATTTAGTGGAACATTCACGTAGCAAACACGTAATACAGATATAGA
 
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JMFS015D09+           AGCAGAGAGCAGCTGCAGTGTCACCACTCTGTTTCTATCCACCCGGGAAGGTCGGTCGGT
JMFS050C01+           AGCAGAGAGCAGCTGCAGTGTCACCACTCTGTTTCAATCCACCCGGGAAGGTCGGTCGGT
JMFS001B09+           AGCAGAGAGCAGCTGCAGTGTCACCACTCTGTTTCTATCCACCCGGGAAGGTCGGTCGGT
JMFS169D10+           AGCAGAGAGCAGCTGCAGTGTCACCACTCTGTTTCTATCCACCCGGGAAGGTCGGTCGGT
                      ____________________________________________________________
consensus             AGCAGAGAGCAGCTGCAGTGTCACCACTCTGTTTCTATCCACCCGGGAAGGTCGGTCGGT
 
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JMFS015D09+           TTGCACTAAAACGAAGAGTACAAACCAGTATGTTCTCCGGACGCTCAAACCAGTACCTTC
JMFS050C01+           TTGCACTAAAACGAAGAGTACAAACCAGTATGTTCTCCGGACGCTCAAACCA        
JMFS001B09+           TTGCACTAAAACGAAGAGTACAAACCAGTATGTTCTCCGGACGCTCAAACCAGTACCTTC
JMFS169D10+           TTGCACTAAAACGAAGAGTACAAACCAGTATGTTCTCCGGACGCTCAAACCAGTACCTTC
                      ____________________________________________________________
consensus             TTGCACTAAAACGAAGAGTACAAACCAGTATGTTCTCCGGACGCTCAAACCAGTACCTTC
 
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JMFS015D09+           TCCGGC                                                      
JMFS001B09+           TCCGGCGGGTTTACG                                             
JMFS169D10+           TCCGGCGGGTTTACGGCAGTTTTCGGTAATTTTATTACGAAGAAGAAGAGGTTGGAATAC
                      ____________________________________________________________
consensus             TCCGGCGGGTTTACGGCAGTTTTCGGTAATTTTATTACGAAGAAGAAGAGGTTGGAATAC