Contig 004894:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP020A07Sequence323017296ref|XP_007034941.1|4e-31Kinase family protein / peptidoglycan-binding LysM domain-containing protein [T158004894 (2)ref|XP_010274212.1|1e-12PREDICTED: protein LYK5-like [Nelumbo nucifera]
JMFS163H10Sequence617004894 (2)ref|XP_006489496.1|4e-57PREDICTED: lysM domain receptor-like kinase 4-like [Citrus sinensis]

Alignment

This contig is upended


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rJMCP020A07+                                          TGTCGCGGGGGTGTCGGAAACCTGctCC
JMFS163H10+                                                      TGTCGGAAACCTGGACC
                      ____________________________________________________________
consensus                                             TGTCGCGGGGGTGTCGGAAACCTGGACC
 
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rJMCP020A07+          GGGTtccactactcGAGATTCCTCCGGTagaGCAAGTCCGTGGAATTGGGGCACTTGCAG
JMFS163H10+           GGGTAGGTGATGAGGAGATTCCTCCGGTTCTGCAAGTCCGTGGAATTGGGGCACTTGCAG
                      ____________________________________________________________
consensus             GGGTAGGTGATGAGGAGATTCCTCCGGTTCTGCAAGTCCGTGGAATTGGGGCACTTGCAG
 
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rJMCP020A07+          AAGATCGGGAAAGTTATATGGTCGCCGGGCTGAAGATCGGTGACCACCGCCGTGGGATTG
JMFS163H10+           AAGATCGGGAAAGTTATATGGTCGCCGGGCTGAAGATCGGTGACCACCGCCGTGGGATTG
                      ____________________________________________________________
consensus             AAGATCGGGAAAGTTATATGGTCGCCGGGCTGAAGATCGGTGACCACCGCCGTGGGATTG
 
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rJMCP020A07+          ACGACGATGG                                                  
JMFS163H10+           ACGACGATGGCGGATTGGAAGCTGGTGAGGTCTCCGTATTCCAGGGTGGACACTCTGTAG
                      ____________________________________________________________
consensus             ACGACGATGGCGGATTGGAAGCTGGTGAGGTCTCCGTATTCCAGGGTGGACACTCTGTAG
 
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JMFS163H10+           AAAGTGTCGCCGGGAACTATGGTGTGGTCGAGAGGGGCATAGGAGATGCTACCGAAAGTG
                      ____________________________________________________________
consensus             AAAGTGTCGCCGGGAACTATGGTGTGGTCGAGAGGGGCATAGGAGATGCTACCGAAAGTG
 
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JMFS163H10+           GAGTTAACGGTGTTGCAGGAACAGGAGATGGGGATAAAGAGGGATTGGTTGGCTTGGAGG
                      ____________________________________________________________
consensus             GAGTTAACGGTGTTGCAGGAACAGGAGATGGGGATAAAGAGGGATTGGTTGGCTTGGAGG
 
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JMFS163H10+           GTGGCGTTTGCGGCGGAGATATTGCTGGCTTCTGCGATCATGCGGCGGCTGACGGAGAAG
                      ____________________________________________________________
consensus             GTGGCGTTTGCGGCGGAGATATTGCTGGCTTCTGCGATCATGCGGCGGCTGACGGAGAAG
 
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JMFS163H10+           AGGTCTCCTATGGCGGCCAGGTCGAGGAAATTGGGGGCGGTGGCGGTGTAAAAAGCGTAG
                      ____________________________________________________________
consensus             AGGTCTCCTATGGCGGCCAGGTCGAGGAAATTGGGGGCGGTGGCGGTGTAAAAAGCGTAG
 
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JMFS163H10+           GTTTTGCAGGGATAGCTCTGGTTGATATTGCAGGCATAGCCGGTGGTGTTTGGTTGGGCT
                      ____________________________________________________________
consensus             GTTTTGCAGGGATAGCTCTGGTTGATATTGCAGGCATAGCCGGTGGTGTTTGGTTGGGCT
 
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JMFS163H10+           TGGGCATAGTGTTGGCTAAGATTGAAGAAGAAGAAGAAGAAGAAGATTAGAAATGCAGCT
                      ____________________________________________________________
consensus             TGGGCATAGTGTTGGCTAAGATTGAAGAAGAAGAAGAAGAAGAAGATTAGAAATGCAGCT
 
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JMFS163H10+           ATGGGGTTGTATGAGATTTTCATTTTTGTTTGGTATTGGACTATTGGGGACGTTGCATAT
                      ____________________________________________________________
consensus             ATGGGGTTGTATGAGATTTTCATTTTTGTTTGGTATTGGACTATTGGGGACGTTGCATAT