Contig 004889:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN005P15Sequence626004889 (7)emb|CDP18718.1|4e-37unnamed protein product [Coffea canephora]
JMFN007D04Sequence611004889 (7)
JMFN014B19Sequence624004889 (7)
JMFS060B06Sequence614004889 (7)
JMFS081H11Sequence627004889 (7)
JMFS141E07Sequence626004889 (7)
JMFS161D08Sequence604004889 (7)

Alignment

This contig is upended


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JMFN005P15+                                      ATGCTTGATACTGACAGTAACATGAAAATCNAA
                      ____________________________________________________________
consensus                                        ATGCTTGATACTGACAGTAACATGAAAATCNAA
 
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JMFN005P15+           TCATTAAAACATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
                      ____________________________________________________________
consensus             TCATTAAAACATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
 
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JMFN005P15+           AAAATCAAGATCTAGGCTTTAGGCCGGTGACCCTCGTTAGCCAACTTGAAGAGCCTGGCC
                      ____________________________________________________________
consensus             AAAATCAAGATCTAGGCTTTAGGCCGGTGACCCTCGTTAGCCAACTTGAAGAGCCTGGCC
 
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JMFN005P15+           TGAGCAGCGGCGGCCTGATTTGAACTAAGCGCCGCACGCCCAAAACTGTCCCTCACTTGC
                      ____________________________________________________________
consensus             TGAGCAGCGGCGGCCTGATTTGAACTAAGCGCCGCACGCCCAAAACTGTCCCTCACTTGC
 
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JMFN005P15+           TGGGTTGTGTAAGGGAAGTTCTTGGTCATCATGGAGTTCAGCATAGCCGCCGTGCCTTCC
                      ____________________________________________________________
consensus             TGGGTTGTGTAAGGGAAGTTCTTGGTCATCATGGAGTTCAGCATAGCCGCCGTGCCTTCC
 
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JMFN005P15+           CTGTAAAGCGCCCCGTACCCGTCCGTACGGGTGTTTGACAGCGCTTCCAGAAGGTTCACG
                      ____________________________________________________________
consensus             CTGTAAAGCGCCCCGTACCCGTCCGTACGGGTGTTTGACAGCGCTTCCAGAAGGTTCACG
 
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JMFN005P15+           CTTCCACTGAAACCTGGAATGTTATTGTTATTCATACCAAACATGCTGCGAATGGTGTTT
                      ____________________________________________________________
consensus             CTTCCACTGAAACCTGGAATGTTATTGTTATTCATACCAAACATGCTGCGAATGGTGTTT
 
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JMFN005P15+           CCGTTCCACCCCACCATTCCCCAGATTAGCGTTGGGTGCGCCTTCCAGAAAGTGCAGGGG
                      ____________________________________________________________
consensus             CCGTTCCACCCCACCATTCCCCAGATTAGCGTTGGGTGCGCCTTCCAGAAAGTGCAGGGG
 
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JMFN005P15+           AAGGGTGGTGAGTTTGGATCAAATCCAGTAGGAGGTGTTCCAGACGCAGGAGGCGTGTTT
JMFN014B19+                                              TGTTCCAGACGCAGGAGGCGTGTTT
JMFS081H11+                                              TGTTCCAGACGCAGGAGGCGTGTTT
JMFS141E07+                                              TGTTCCAGACGCAGGAGGCGTGTTT
JMFS060B06+                                                  CCAGACGCAGGAGGCGTGTNT
JMFN007D04+                                                                     TT
JMFS161D08+                                                                   GTTT
                      ____________________________________________________________
consensus             AAGGGTGGTGAGTTTGGATCAAATCCAGTAGGAGGTGTTCCAGACGCAGGAGGCGTGTTT
 
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JMFN005P15+           GGATCAAATGGAAATGGAGGCGTTCCAGATGGAGGTGTGTAGTGTGGTGGCGTTCCAGAT
JMFN014B19+           GGATCAAATGGAAATGNAGGCGTTCCAGATGGAGGTGTGTAGTGTGGTGGCGTTCCAGAT
JMFS081H11+           GGATCAAATGGAAATGGAGGCGTTCCAGATGGAGGTGTGTAGTGTGGTGGCGTTCCAGAT
JMFS141E07+           GGATCAAATGGAAATGNAGGCGTTCCAGATGGAGGTGTGTAGTGTGGTGGCGTTCCAGAT
JMFS060B06+           GGATCAAATGGAAATGNAGGCGTTCCAGATGNAGGTGTGTAGTGTGGTGGCGTTCCAGAT
JMFN007D04+           GGATCAAATGGAAATGGAGGCGTTCCAGATGGAGGTGTGTAGTGTGGTGGCGTTCCAGAT
JMFS161D08+           GGATCAAATGGAAATGNAGGCGTTCCAGATGGAGGTGTGTAGTGTGGTGGCGTTCCAGAT
                      ____________________________________________________________
consensus             GGATCAAATGGAAATGGAGGCGTTCCAGATGGAGGTGTGTAGTGTGGTGGCGTTCCAGAT
 
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JMFN005P15+           GGAGGCGTGTAATATGGCGGCGTTCCAGATGGAGGCGTGTAATACGGCGGCGT       
JMFN014B19+           GGAGGCGTGTAATATGGCGGCGTTCCAGATGGAGGCGTGTAATACGGCGGCGTTCCAGAC
JMFS081H11+           GGAGGCGTGTAATATGGCGGCGTTCCAGATGGAGGCGTGTAATACGGCGGCGTTCCAGAC
JMFS141E07+           GGAGGCGTGTAATATGGCGGCGTTCCAGATGGAGGCGTGTAATACGGCGGCGTTCCAGAC
JMFS060B06+           GGAGGCGTGTAATATGGCGGCGTTCCAGATGGAGGCGTGTAATACGGCGGCGTTCCAGAC
JMFN007D04+           GGAGGCGTGTAATATGGCGGCGTTCCAGATGGAGGCGTGTAATACGGCGGCGTTCCAGAC
JMFS161D08+           GGAGGCGTGTAATATGGCGGCGTTCCAGATGGAGGCGTGTAATACGGCGGCGTTCCAGAC
                      ____________________________________________________________
consensus             GGAGGCGTGTAATATGGCGGCGTTCCAGATGGAGGCGTGTAATACGGCGGCGTTCCAGAC
 
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JMFN014B19+           GGAGGAGAGTAGTTTGGGGTAGGGAGGATGGGGGTGGTCGGAGTTCCTGGATCAACCGGC
JMFS081H11+           GGAGGAGAGTAGTTTGGGGTAGGGAGGATGGGGGTGGTCGGAGTTCCTGGATCAACCGGC
JMFS141E07+           GGAGGAGAGTAGTTTGGGGTAGGGAGGATGGGGGTGGTCGGAGTTCCTGGATCAACCGGC
JMFS060B06+           GGAGGAGAGTAGTTTGGGGTAGGGAGGATGGGGGTGGTCGGAGTTCCTGGATCAACCGGC
JMFN007D04+           GGAGGAGAGTAGTTTGGGGTAGGGAGGATGGGGGTGGTCGGAGTTCCTGGATCAACCGGC
JMFS161D08+           GGAGGAGAGTAGTTTGGGGTAGGGAGGATGGGGGTGGTCGGAGTTCCTGGATCAACCGGC
                      ____________________________________________________________
consensus             GGAGGAGAGTAGTTTGGGGTAGGGAGGATGGGGGTGGTCGGAGTTCCTGGATCAACCGGC
 
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JMFN014B19+           GGTGTTGCAATGGGAGTGGTTGGGGTAGTCGGAGTGGGAGTATAGGTTGGAGGTGAGTGA
JMFS081H11+           GGTGTTGCAATGGGAGTGGTTGGGGTAGTCGGAGTGGGAGTATAGGTTGGAGGTGAGTGA
JMFS141E07+           GGTGTTGCAATGGGAGTGGTTGGGGTAGTCGGAGTGGGAGTATAGGTTGGAGGTGAGTGA
JMFS060B06+           GGTGTTGCAATGGGAGTGGTTGGGGTAGTCGGAGTGGGAGTATAGGTTGGAGGTGAGTGA
JMFN007D04+           GGTGTTGCAATGGGAGTGGTTGGGGTAGTCGGAGTGGGAGTATAGGTTGGAGGTGAGTGA
JMFS161D08+           GGTGTTGCAATGGGAGTGGTTGGGGTAGTCGGAGTGGGAGTATAGGTTGGAGGTGAGTGA
                      ____________________________________________________________
consensus             GGTGTTGCAATGGGAGTGGTTGGGGTAGTCGGAGTGGGAGTATAGGTTGGAGGTGAGTGA
 
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JMFN014B19+           TAATAGCCACCACCGCCGCCGCCACCACCACCATGGTGCCCTGAAGGAGGAGATACGGGA
JMFS081H11+           TAATAGCCACCACCGCCGCCGCCACCACCACCATGGTGCCCTGAAGGAGGAGATACGGGA
JMFS141E07+           TAATAGCCACCACCGCCGCCGCCACCACCACCATGGTGCCCTGAAGGAGGAGATACGGGA
JMFS060B06+           TAATAGCCACCACCGCCGCCGCCACCACCACCATGGTGCCCTGAAGGAGGAGATACGGGA
JMFN007D04+           TAATAGCCACCACCGCCGCCGCCACCACCACCATGGTGCCCTGAAGGAGGAGATACGGGA
JMFS161D08+           TAATAGCCACCACCGCCGCCGCCACCACCACCATGGTGCCCTGAAGGAGGAGATACGGGA
                      ____________________________________________________________
consensus             TAATAGCCACCACCGCCGCCGCCACCACCACCATGGTGCCCTGAAGGAGGAGATACGGGA
 
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JMFN014B19+           GTAGGGTCACTATGATGGCTTCCACCACCGCCACCACCGCCGTGTGGGGGACTATCACAG
JMFS081H11+           GTAGGGTCACTATGATGGCTTCCACCACCGCCACCACCGCCGTGTGGGGGACTATCACAG
JMFS141E07+           GTAGGGTCACTATGATGGCTTCCACCACCGCCACCACCGCCGTGTGGGGGACTATAACAG
JMFS060B06+           GTAGGGTCACTATGATGGCTTCCACCACCGCCACCACCGCCGTGTGGGGGACTATCACAG
JMFN007D04+           GTAGGGTCACTATGATGGCTTCCACCACCGCCACCACCGCCGTGTGGGGGACTATCACAG
JMFS161D08+           GTAGGGTCACTATGATGGCTTCCACCACCGCCACCACCGCCGTGTGGGGGACTATCACAG
                      ____________________________________________________________
consensus             GTAGGGTCACTATGATGGCTTCCACCACCGCCACCACCGCCGTGTGGGGGACTATCACAG
 
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JMFN014B19+           TTAATGGAAGGTGTGGTCGGAGTTCTGGTATTGGGGTGGTGAGAATTATGGGTTTTTTGG
JMFS081H11+           TTAATGGAAGGTGTGGTCGGAGTTCTGGTATTGGGGTGGTGAGAATTATGGGTTTTTTGG
JMFS141E07+           TTAATGGAAGGTGTGGTCGGAGTTCTGGTATTGGGGTGGTGAGAATTATGGGTTTTTTGG
JMFS060B06+           TTAATGGAAGGTGTGGTCGGAGTTCTGGTATTGGGGTGGTGAGAATTATGGGTTTTTTGG
JMFN007D04+           TTAATGGAAGGTGTGGTCGGAGTTCTGGTATTGGGGTGGTGAGAATTATGGGTTTTTTGG
JMFS161D08+           TTAATGGAAGGTGTGGTCGGAGTTCTGGTATTGGGGTGGTGAGAATTATGGGTTTTTTGG
                      ____________________________________________________________
consensus             TTAATGGAAGGTGTGGTCGGAGTTCTGGTATTGGGGTGGTGAGAATTATGGGTTTTTTGG
 
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JMFN014B19+           TAATGAAATGGAGAAGAAGAGACGGACATGACAGGGACGACCAAAGTCTGGGAAAGTAAA
JMFS081H11+           TAATGAAATGGAGAAGAAGAGACGGACATGACAGGGACGACCAAAGTCTGGGAAAGTAAA
JMFS141E07+           TAATGAAATGGAGAAGAAGAGACGGACATGACAGGGACGACCAAAGTCTGGGAAAGTAAA
JMFS060B06+           TAATGAAATGGAGAAGAAGAGACGGACATGACAGGGACGACCAAAGTCTGGGAAAGTAAA
JMFN007D04+           TAATGAAATGGAGAAGAAGAGACGGACATGACAGGGACGACCAAAGTCTGGGAAAGTAAA
JMFS161D08+           TAATGAAATGGAGAAGAAGAGACGGACATGACAGGGACGACCAAAGTCTGGGAAAGTAAA
                      ____________________________________________________________
consensus             TAATGAAATGGAGAAGAAGAGACGGACATGACAGGGACGACCAAAGTCTGGGAAAGTAAA
 
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JMFN014B19+           GCAACCATAGTTGCCAACGTGAAGAAAGAAAACTCCATCGTCGCCACCTTTATGTTGAGA
JMFS081H11+           GCAACCATAGTTGCCAACGTGAAGAAAGAAAACTCCATCGTCGCCACCTTTATGTTGAGA
JMFS141E07+           GCAACCATAGTTGCCAACGTGAAGAAAGAAAACTCCATCGTCGCCACCTTTATGTTGAGA
JMFS060B06+           GCAACCATAGTTGCCAACGTGAAGAAAGAAAACTCCATCGTCGCCACCTTTATGTTGAGA
JMFN007D04+           GCAACCATAGTTGCCAACGTGAAGAAAGAAAACTCCATCGTCGCCACCTTTATGTTGAGA
JMFS161D08+           GCAACCATAGTTGCCAACGTGAAGAAAGAAAACTCCATCGTCGCCACCTTTATGTTGAGA
                      ____________________________________________________________
consensus             GCAACCATAGTTGCCAACGTGAAGAAAGAAAACTCCATCGTCGCCACCTTTATGTTGAGA
 
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JMFN014B19+           GACGACGACCAACGTC                                            
JMFS081H11+           GACGACGACCAACGTCTCATATATATATAATTATAGTAACCAAAA               
JMFS141E07+           GACGACGACCAACGTCTCATATATATATAATTATAGTAACCAAAAGGA            
JMFS060B06+           GACGACGACCAACGTCTCATATATATATAATTATAGTAACCAAAAGGA            
JMFN007D04+           GACGACGACCAACGTCTCATATATATATAATTATAGTAACCAAAAGGA            
JMFS161D08+           GACGACGACCAACGTCTCATATATATATAATTATAGTAACCAAAAGGAGAAGAAGATGGA
                      ____________________________________________________________
consensus             GACGACGACCAACGTCTCATATATATATAATTATAGTAACCAAAAGGAGAAGAAGATGGA