| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011B13 | Sequence | 422 | 018410 | dbj|BAO57288.1| | 8e-19 | pseudo-response regulator [Ipomoea nil] | 624 | 004883 (7) | dbj|BAO57288.1| | 1e-40 | pseudo-response regulator [Ipomoea nil] |
| JMFF028H18 | Sequence | 621 | 004883 (7) | dbj|BAO57288.1| | 8e-39 | pseudo-response regulator [Ipomoea nil] | |||||
| JMFN016F15 | Sequence | 463 | 004883 (7) | dbj|BAO57288.1| | 1e-27 | pseudo-response regulator [Ipomoea nil] | |||||
| JMFN025C07 | Sequence | 575 | 004883 (7) | dbj|BAO57288.1| | 1e-54 | pseudo-response regulator [Ipomoea nil] | |||||
| JMFS044H12 | Sequence | 433 | 004883 (7) | dbj|BAO57288.1| | 1e-25 | pseudo-response regulator [Ipomoea nil] | |||||
| JMFS088F12 | Sequence | 648 | 004883 (7) | dbj|BAO57288.1| | 6e-64 | pseudo-response regulator [Ipomoea nil] | |||||
| JMFS154F02 | Sequence | 652 | 004883 (7) | dbj|BAO57288.1| | 2e-67 | pseudo-response regulator [Ipomoea nil] | |||||
This contig is upended
. : . : . : . : . : . :
JMFN016F15+ CAACAACAAACACTAG
JMFS044H12+ AG
rJMFF011B13- ACAAACACTAG
____________________________________________________________
consensus CAACAACAAACACTAG
. : . : . : . : . : . :
JMFN016F15+ AGACATCCGTCACATTACATTGAAGAATTTTATTAGGAAATACAAGTAGTAGTTTGGGGG
JMFN025C07+ ACATTGAAGAATTTTATTAGGAAATACAAGTAGTAGTTTGGGGG
JMFS044H12+ AGACATCCGTCACATTACATTGAAGAATTTTATTAGGAAATACAAGTAGTAGTTTGGGGG
rJMFF011B13- AGACATCCGTCACATTACATTGAAGAATTTTATTAGGAAATACAAGTAGTAGTTTGGGGG
____________________________________________________________
consensus AGACATCCGTCACATTACATTGAAGAATTTTATTAGGAAATACAAGTAGTAGTTTGGGGG
. : . : . : . : . : . :
JMFN016F15+ TAGTCCATGACCCTCAATCAGTACCTAGTAGTCATATAAACCACAC-AAAAAAGTTCCCA
JMFN025C07+ TAGTCCATGACCCTCAATCAGTACCTAGTAGTCATATAAACCACAC-AAAAAAGTTCCCA
JMFS044H12+ TAGTCCATGACCCTCAATCAGTACCTAGTAGTCATATAAACCACAC-AAAAAAGTTCCCA
rJMFF011B13- TAGTCCATGACCCTCAATCAGTACCTAGTAGTCATATAAACCACAC-AAAAAAGTTCCCA
rJMFF028H18- TCCATGACCCTCAATCAGTACCTAGTAGTCATATAAACCACACAAAAAAAGTTCCCA
____________________________________________________________
consensus TAGTCCATGACCCTCAATCAGTACCTAGTAGTCATATAAACCACAC-AAAAAAGTTCCCA
. : . : . : . : . : . :
JMFN016F15+ AGAATACATTTTTCAGTGGTTCTTCACTCATTCTAGTCTTTAGAAATGTCTTATTCTTAG
JMFN025C07+ AGAATACATTTTTCAGTGGTTCTTCACTCATTCTAGTCTTTAGAAATGTCTTATTCTTAG
JMFS044H12+ AGAATACATTTTTCAGTGGTTCTTCACTCATTCTAGTCTTTAGAAATGTCTTATTCTTAG
rJMFF011B13- AGAATACATTTTTCAGTGGTTCTTCACTCATTCTAGTCTTTAGAAATGTCTTATTCTTAG
rJMFF028H18- AGAATACATTTTTCAGTGGTTCTTCACTCATTCTAGTCTTTAGAAATGTCTTATTCTTAG
____________________________________________________________
consensus AGAATACATTTTTCAGTGGTTCTTCACTCATTCTAGTCTTTAGAAATGTCTTATTCTTAG
. : . : . : . : . : . :
JMFN016F15+ AAACATGAAACTGCTGCCTCCCTATCTATGCGATCAATGCTAATCATGTACATAATACAC
JMFN025C07+ AAACATGAAACTGCTGCCTCCCTATCTATGCGATCAATGCTAATCATGTACATAATACAC
JMFS044H12+ AAACATGAAACTGCTGCCTCCCTATCTATGCGATCAATGCTAATCATGTACATAATACAC
rJMFF011B13- AAACATGAAACTGCTGCCTCCCTATCTATGCGATCAATGCTAATCATGTACATAATACAC
rJMFF028H18- AAACATGAAACTGCTGCCTCCCTATCTATGCGATCAATGCTAATCATGTACATAATACAC
JMFS088F12+ CTATGCGATCAATGCTAATCATGTACATAATACAC
____________________________________________________________
consensus AAACATGAAACTGCTGCCTCCCTATCTATGCGATCAATGCTAATCATGTACATAATACAC
. : . : . : . : . : . :
JMFN016F15+ ATGCACCATCAAGCGACAGGGCAGGGGTCAGCAATTTGTATCCTTTGTTTTGGTTTTATC
JMFN025C07+ ATGCACCATCAAGCGACAGGGCAGGGGTCAGCAATTTGTATCCTTTGTTTTGGTTTTATC
JMFS044H12+ ATGCACCATCAAGCGACAGGGCAGGGGTCAGCAATTTGTATCCTTTGTTTTGGTTTTATC
rJMFF011B13- ATGCACCATCAAGCGACAGGGCAGGGGTCAGCAATTTGTATCCTTTGTTTTGGTTTTATC
rJMFF028H18- ATGCACCATCAAGCGACAGGGCAGGGGTCAGCAATTTGTATCCTTTGTTTTGGTTTTATC
JMFS088F12+ ATGCACCATCAAGCGACAGGGCAGGGGTCAGCAATTTGTATCCTNTGTTTTGGTTTTATC
JMFS154F02+ CATCAAGCGACAGGGCAGGGGTCAGCAATTTGTATCCTTTGTTTTGGTTTTATC
____________________________________________________________
consensus ATGCACCATCAAGCGACAGGGCAGGGGTCAGCAATTTGTATCCTTTGTTTTGGTTTTATC
. : . : . : . : . : . :
JMFN016F15+ TGAGGACTGGCTCACAAATTGTCCTCGGATGCGTGGCCGCTGTTCAGCCAGTCTCTTTCT
JMFN025C07+ TGAGGACTGGCTCACAAATTGTCCTCGGATGCGTGGCCGCTGTTCAGCCAGTCTCTTTCT
JMFS044H12+ TGAGGACTGGCTCACAAATTGTCCTCGGATGCGTGGCCGCTGTTCAGCCAGTCTCTTTCT
rJMFF011B13- TGAGGACTGGCTCACAAATTGTCCTCGGATGCGTGGCCGCTGTTCAGCCAGTCTCTTTCT
rJMFF028H18- TGAGGACTGGCTCACAAATTGTCCTCGGATGCGTGGCCGCTGTTCAGCCAGTCTCTTTCT
JMFS088F12+ TGAGGACTGGCTCACAAATTGTCCTCGGATGCGTGGCCGCTGTTCAGCCAGTCTCTTTCT
JMFS154F02+ TGAGGACTGGCTCACAAATTGTCCTCGGATGCGTGGCCGCTGTTCAGCCAGTCTCTTTCT
____________________________________________________________
consensus TGAGGACTGGCTCACAAATTGTCCTCGGATGCGTGGCCGCTGTTCAGCCAGTCTCTTTCT
. : . : . : . : . : . :
JMFN016F15+ GCTTTGATATCGAACCTTTTTATCAAAGTTACTCTCTTTTCGCTTTTGCCTGAACTTGTT
JMFN025C07+ GCTTTGATATCGAACCTTTTTATCAAAGTTCCTCTCTTTTCGCTTTTGCCTGAACTTGTT
JMFS044H12+ GCTTTGATATCGAACCTTTTTATCAAAGTTCCTCTCTTTTCGCTTTTGCCTGAACTTGTT
rJMFF011B13- GCTTTGATATCGAACCTTTTTATCAAAGTTCCTCTCTTTTCGCTTTTGCCTGAACTTGTT
rJMFF028H18- GCTTTGATATCNAACCTTTTTATCAAAGTTCCTCTCTTTTCGCTTTTGCCTGAACTTGTT
JMFS088F12+ GCTTTGATATCGAACCTTTTTATCAAAGTTCCTCTCTTTTCGCTTTTGCCTGAACTTGTT
JMFS154F02+ GCTTTGATATCGAACCTTTTTATCAAAGTTCCTCTCTTTTCGCTTTTGCCTGAACTTGTT
____________________________________________________________
consensus GCTTTGATATCGAACCTTTTTATCAAAGTTCCTCTCTTTTCGCTTTTGCCTGAACTTGTT
. : . : . : . : . : . :
JMFN016F15+ CAAGGCAGCCTCCCTTTGTGCTTGTCGA
JMFN025C07+ CAAGGCAGCCTCCCTTTGTGCTTGTCGACATTGGTCTACTCCACTTCTGCTACCACTACC
JMFS044H12+ CAAGGCAGCCTC
rJMFF011B13- CAAGGCAGCCTCCCTTTGTGCTTGTCGACATTGGTCTACTCCACTTCTGCTACCACTACC
rJMFF028H18- CAAGGCAGCCTCCCTTTGTGCTTGTCGACATTGGTCTACTCCACTTCTGCTACCACTACC
JMFS088F12+ CAAGGCAGCCTCCCTTTGTGCTTGTCGACATTGGTCTACTCCACTTCTGCTACCACTACC
JMFS154F02+ CAAGGCAGCCTCCCTTTGTGCTTGTCGACATTGGTCTACTCCACTTCTGCTACCACTACC
____________________________________________________________
consensus CAAGGCAGCCTCCCTTTGTGCTTGTCGACATTGGTCTACTCCACTTCTGCTACCACTACC
. : . : . : . : . : . :
JMFN025C07+ A-CTCTCTCCACCAACCGTGCATTTTCCAGCTATTCCATCTTCAGTAGCCATGTTAGTTT
rJMFF011B13- A-CTCTCTCCACCAACCGTGCATTTTCCAGCTATTCCATCTTCAGTAGCCATGTTAGTTT
rJMFF028H18- ACCNNTCTCCACCAACCGTGCATTTTCCAGCTATTCCATCTTCAGTAGCCATGTTAGNTT
JMFS088F12+ A-CTCTCTCCACCAACCGTGCATTTTCCAGCTATTCCATCTTCAGTAGCCATGTTAGTTT
JMFS154F02+ A-CTCTCTCCACCAACCGTGCATTTTCCAGCTATTCCATCTTCAGTAGCCATGTTAGTTT
____________________________________________________________
consensus A-CTCTCTCCACCAACCGTGCATTTTCCAGCTATTCCATCTTCAGTAGCCATGTTAGTTT
. : . : . : . : . : . :
JMFN025C07+ CCTCGGCAATTACAGCAGTGTTGCTTTCATTCTGCCCATTGCTTGCATTGTTA
rJMFF011B13- CCTCGGCAATTACAGCAGTGTTGCTTTCATTCTGCCCATTGCTTGCATTGTTACTTCCCG
rJMFF028H18- CCTCGGCAATTACAGCAGTGTTGCTTTCATTCTGCCCATTGCTTGCATTGTTACTTCCCG
JMFS088F12+ CCTCGGCAATTACAGCAGTGTTGCTTTCATTCTGCCCATTGCTTGCATTGTTACTTCCCG
JMFS154F02+ CCTCGGCAATTACAGCAGTGTTGCTTTCATTCTGCCCATTGCTTGCATTGTTACTTCCCG
____________________________________________________________
consensus CCTCGGCAATTACAGCAGTGTTGCTTTCATTCTGCCCATTGCTTGCATTGTTACTTCCCG
. : . : . : . : . : . :
rJMFF011B13- ATGCACTTCCATAGT
rJMFF028H18- ATGCACTTCCATAGTTCGTATTTCCATCTGNCCAATGTACCTAACATATAAGGTCCGGCT
JMFS088F12+ ATGCACTTCCATAGTTCGTATTTCCATCTG-TCAGTGTACCTAACATATAGGGTCCGGCT
JMFS154F02+ ATGCACTTCCATAGTTCGTATTTCCATCTG-TCAGTGTACCTAACATATAGGGTCCGGCT
____________________________________________________________
consensus ATGCACTTCCATAGTTCGTATTTCCATCTG-TCAGTGTACCTAACATATAGGGTCCGGCT
. : . : . : . : . : . :
rJMFF028H18- CCATCTGCAACANTNTTTCTAGAA
JMFS088F12+ CCATCTGCAACAGTTTTTCTAGAAGGCAAAGAATCTTCATTCAGGAGCTGCTGTTGTTGT
JMFS154F02+ CCATCTGCAACAGTTTTTCTAGAAGGCAAAGAATCTTCATTCAGGAGCTGCTGTTGTTGT
____________________________________________________________
consensus CCATCTGCAACAGTTTTTCTAGAAGGCAAAGAATCTTCATTCAGGAGCTGCTGTTGTTGT
. : . : . : . : . : . :
JMFS088F12+ TGCTGCTGCTGTTGTTGTTGTTGTTGCTGCTGCTGCATGTTATGCACATGGTGATGATGG
JMFS154F02+ TGCTGCTGCTGTTGTTGTTGTTGTTGCTGCTGCTGCATGTTATGCACATGGTGATGATGG
____________________________________________________________
consensus TGCTGCTGCTGTTGTTGTTGTTGTTGCTGCTGCTGCATGTTATGCACATGGTGATGATGG
. : . : . : . : . : . :
JMFS088F12+ TGATGGTAATGGTGATGATGATGCTGAACTTGATACTGCTGCTGCTGCATGGCCCTTGCC
JMFS154F02+ TGATGGTAATGGTGATGATGATGCTGAACTTGATACTGCTGCTGCTGCATGGCCCTTGCC
____________________________________________________________
consensus TGATGGTAATGGTGATGATGATGCTGAACTTGATACTGCTGCTGCTGCATGGCCCTTGCC
. : . : . : . : . : . :
JMFS088F12+ TGGGCCAATGCTGCC
JMFS154F02+ TGGGCCAATGCTGCCTTGGCGGAATCACCTTTTCCTGGAAGGGAAGAATTTTGTCCTTGC
____________________________________________________________
consensus TGGGCCAATGCTGCCTTGGCGGAATCACCTTTTCCTGGAAGGGAAGAATTTTGTCCTTGC