Contig 004882:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS020F11Sequence617004882 (6)gb|AAY84833.1|2e-110isoamylase [Ipomoea batatas]
JMFS154B01Sequence626004882 (6)gb|AAY84833.1|9e-89isoamylase [Ipomoea batatas]
JMFS159B03Sequence435004882 (6)gb|AAY84833.1|1e-75isoamylase [Ipomoea batatas]
JMFS166F01Sequence602004882 (6)gb|AAY84833.1|7e-99isoamylase [Ipomoea batatas]
JMSF009E01Sequence404004882 (6)gb|AAY84833.1|4e-64isoamylase [Ipomoea batatas]632009915 (2)gb|AAY84833.1|4e-78isoamylase [Ipomoea batatas]
JMSF010M10Sequence271004882 (6)gb|AAY84833.1|3e-24isoamylase [Ipomoea batatas]790009915 (2)gb|AAY84833.1|5e-64isoamylase [Ipomoea batatas]

Alignment

This contig is upended


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JMFS020F11+                CCAAATTCTGCTCTGCTTACAATGGCCTTAGCATAAGGATCCAAAAGTATCCTAG
JMFS166F01+                                                                     AG
                      ____________________________________________________________
consensus                  CCAAATTCTGCTCTGCTTACAATGGCCTTAGCATAAGGATCCAAAAGTATCCTAG
 
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JMFS020F11+           TTGAATCAAAGTAATGCCCTTCTTCAGGAGCAAACTTCCCATCAAAACTGTAACCATAGA
JMFS166F01+           TTGAATCAAAGTAATGCCCTTCTTCAGGAGCAAACTTCCCATCAAAACTGTAACCATAGA
JMFS154B01+                                             CTTCCCATCAAAACTGTAACCATAGA
                      ____________________________________________________________
consensus             TTGAATCAAAGTAATGCCCTTCTTCAGGAGCAAACTTCCCATCAAAACTGTAACCATAGA
 
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JMFS020F11+           GCATATTATCAAAGTCTCCCTTGAGAAATACATGCCAGACATCTCCAGTCTTATTGATAG
JMFS166F01+           GCATATTATCAAAGTCTCCCTTGAGAAATACATGCCAGACATCTCCAGTCTTATTGATAG
JMFS159B03+                                     AATACATGCCAGACATCTCCAGTCTTATTGATAG
JMFS154B01+           GCATATTATCANAGTCTCCCTTGAGAAATACATGCCAGACATCTCCAGTCTTATTGATAG
                      ____________________________________________________________
consensus             GCATATTATCAAAGTCTCCCTTGAGAAATACATGCCAGACATCTCCAGTCTTATTGATAG
 
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JMFS020F11+           ATGGATCCAAAGGAATCTGCTCCGTCACTTTTTTCTGAGGTAAGTCGGCGAGACTGATCA
JMFS166F01+           ATGGATCCAAAGGAATCTGCTCCGTCACTTTTTTCTGAGGTAAGTCGGCGAGACTGATCA
JMFS159B03+           ATGGATCCAAAGGAATCTGCTCCGTCACTTTTTTCTGAGGTAAGTCGGCGAGACTGATCA
JMSF009E01+                               TCCGTCACTTTTTTCTGAGGTAAGTCGGCGAGACTGATCA
JMFS154B01+           ATGGATCCAAAGGAATCTGCTCCGTCACTTTTTTCTGAGGTAAGTCGGCGAGACTGATCA
                      ____________________________________________________________
consensus             ATGGATCCAAAGGAATCTGCTCCGTCACTTTTTTCTGAGGTAAGTCGGCGAGACTGATCA
 
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JMFS020F11+           AGTAGAGGGCTGCTGACGTGGCATTGCTCGAAAAGACAGCGAAATTGATCCCGCCCTCTC
JMFS166F01+           AGTAGAGGGCTGCTGACGTGGCATTGCTCGAAAAGACAGCGAAATTGATCCCGCCCTCTC
JMFS159B03+           AGTAGAGGGCTGCTGACGTGGCATTGCTCGAAAAGACAGCGAAATTGATCCCGCCCTCTC
JMSF009E01+           AGTAGAGGGCTGCTGACGTGGCATTGCTCGAAAAGACAGCGAAATTGATCCCGCCCTCTC
JMFS154B01+           AGTAGAGGGCTGCTGACGTGGCATTGCTCGAAAAGACAGCGAAATTGATCCCGCCCTCTC
                      ____________________________________________________________
consensus             AGTAGAGGGCTGCTGACGTGGCATTGCTCGAAAAGACAGCGAAATTGATCCCGCCCTCTC
 
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JMFS020F11+           TAGCGGTGGCGCCGAACGGTGTCGGATGCCCGGAGAAAACCTCGAAACGACGACGTAATT
JMFS166F01+           TAGCGGTGGCGCCGAACGGTGTCGGATGCCCGGAGAAAACCTCGAAACGACGACGTAATT
JMFS159B03+           TAGCGGTGGCGCCGAACGGTGTCGGATGCCCGGAGAAAACCTCGAAACGACGACGTAATT
JMSF009E01+           TAGCGGTGGCGCCGAACGGTGTCGGATGCCCGGAGAAAACCTCGAAACGACGACGTAATT
JMFS154B01+           TAGCGGTGGCGCCGAACGGTGTCGGATGCCCGGAGAAAACCTCGAAACGACGACGTAATT
                      ____________________________________________________________
consensus             TAGCGGTGGCGCCGAACGGTGTCGGATGCCCGGAGAAAACCTCGAAACGACGACGTAATT
 
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JMFS020F11+           CGTACGGTAGGGGCTTCTCCACCACCACCGCCGTAGTGTCGGACTCACCTACGCCATCAA
JMFS166F01+           CGTACGGTAGGGGCTTCTCCACCACCACCGCCGTAGTGTCGGACTCACCTCCGCCATCAA
JMFS159B03+           CGTACGGTAGGGGCTTCTCCACCACCACCGCCGTAGTGTCGGACTCACCTCCGCCATCAA
JMSF009E01+           CGTACGGTAGGGGCTTCTCCACCACCACCGCCGTAGTGTCGGACTCACCTCCGCCATCAA
JMSF010M10+                                                GTCGGACTCACNTCCGCCATCAA
JMFS154B01+           CGTACGGTAGGGGCTTCTCCACCACCACCGCCGTAGTGTCGGACTCACCTCCGCCATCAA
                      ____________________________________________________________
consensus             CGTACGGTAGGGGCTTCTCCACCACCACCGCCGTAGTGTCGGACTCACCTCCGCCATCAA
 
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JMFS020F11+           TGGCCGCATTAACAGCGAGCACTGAAGAAGGTCTCGCCTTTTTTCCAAATTCAGCAAAGT
JMFS166F01+           TGGCCGCATTAACAGCGAGCACTGAAGAAGGTCTCGCCTTTTTTCCAAATTCAGCAAAGT
JMFS159B03+           TGGCCGCATTAACAGCGAGCACTGAAGAAGGTCTCGCCTTTTTTCCAAATTCAGCAAAGT
JMSF009E01+           TGGCCGCATTAACAGCGAGCACTGAAGAAGGTCTCGCCTTTTTTCCAAATTCAGCAAAGT
JMSF010M10+           TGGCCGCATTAACAGCGAGCACTGAAGAAGGTCTCGCCTTTTTTCCAAATTCAGCAAAGT
JMFS154B01+           TGGCCGCATTAACAGCGAGCACTGAAGAAGGTCTCGCCTTTTTTCCAAATTCAGCAAAGT
                      ____________________________________________________________
consensus             TGGCCGCATTAACAGCGAGCACTGAAGAAGGTCTCGCCTTTTTTCCAAATTCAGCAAAGT
 
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JMFS020F11+           AATTCTGCAGAAACCCGAAATTTAATCCAGTTTTGCGGATGTTTGAACTTCTGGAGTGTA
JMFS166F01+           AATTCTGCAGAAACCCGAAATTTAATCCAGTTTTGCGGATGTTTGAACTTCTGGAGTGTA
JMFS159B03+           AATTCTGCAGAAACCCGAAATTTAATCCAGTTTTGCGGATGTTTGAACTTCTGGAGTGTA
JMSF009E01+           AATTCTGCAGAAACCCGAAATTTAATCCAGTTTTGCGGATGTTTGAACTTCTGGAGTGTA
JMSF010M10+           AATTCTGCAGAAACCCGAAATTTAATCCAGTTTTGCGGATGTTTGAACTTCTGGAGTGTA
JMFS154B01+           AATTCTGCAGAAACCCGAAATTTAATCCAGTTTTGCGGATGTTTGAACTTCTGGAGTGTA
                      ____________________________________________________________
consensus             AATTCTGCAGAAACCCGAAATTTAATCCAGTTTTGCGGATGTTTGAACTTCTGGAGTGTA
 
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JMFS020F11+           GTTTGGGGGAGTATGGTGAGATTGAAGGAGAGTGAAGCAACTCCATTTCGGAATTGAGCA
JMFS166F01+           GTTTGGGGGAGTATGGTGAGATTGAAGGAGAGTGAAGCAACTCCATTTCGGAATTGAGCA
JMFS159B03+           GTTTGGGGGAGTATGGTCAGATTGAAGGAGAGTGAAGCAAC                   
JMSF009E01+           GTTTGGGGGAGTATGGTGAGATTGAAGGAGAGTGAAGCAACTCCATTTCGGAATTGAGCA
JMSF010M10+           GTTTGGGGGAGTATGGTGAGATTGAAGGAGAGTGAAGCAACTCCATTTCGGAATTGAGCA
JMFS154B01+           GTTTGGGGGAGTATGGTGAGATTGAAGGAGAGTGAAGCAACTCCATTTCGGAATTGAGCA
                      ____________________________________________________________
consensus             GTTTGGGGGAGTATGGTGAGATTGAAGGAGAGTGAAGCAACTCCATTTCGGAATTGAGCA
 
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JMFS020F11+           AGTAATCTCATCAAAGAGTTAG                                      
JMFS166F01+           AGTAATCTCATCAAAGAGTTAGCCTCTATACATCTCGGAGTACGTACAGATTAAGACTGC
JMSF009E01+           AG                                                          
JMSF010M10+           AGTAATCTCATCAAAGAGTTAGCCTCTATACATCTCGGAGTACGTACAGATTAAGACTGC
JMFS154B01+           AGTAATCTCATCAAAGAGTTAGCCTCTATACATCTCGGAGTACGTACAGATTAAGACTGC
                      ____________________________________________________________
consensus             AGTAATCTCATCAAAGAGTTAGCCTCTATACATCTCGGAGTACGTACAGATTAAGACTGC
 
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JMSF010M10+           CATCCAG                                                     
JMFS154B01+           CATCCAGACAATCAGTGATCAATTAACTTTTTCTGCGTGTCATATTAGGACAAGGGCTAG
                      ____________________________________________________________
consensus             CATCCAGACAATCAGTGATCAATTAACTTTTTCTGCGTGTCATATTAGGACAAGGGCTAG