Contig 004875:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS016A04Sequence579004875 (5)
JMFS019C03Sequence458004875 (5)
JMFS051C12Sequence581004875 (5)
JMFS073G09Sequence618004875 (5)
JMFS148C03Sequence619004875 (5)

Alignment

This contig is upended


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JMFS019C03+                                                    AGCAAACCCATTATCCGCA
JMFS073G09+                                                                    GCA
                      ____________________________________________________________
consensus                                                      AGCAAACCCATTATCCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS019C03+           GCTGCTACCGCAATGTGGACCGACAAAACCAACAGCTTCAACACCGACATCCTCAACATC
JMFS073G09+           GCTGCTACCGCAATGTGGACCGACAAAACCAACAGCTTCAACACCGACATCCTCAACATC
JMFS051C12+                                                 CAACACCGACATCCTCAACATC
JMFS148C03+                                                TCAACACCGACATCCTCAACATC
                      ____________________________________________________________
consensus             GCTGCTACCGCAATGTGGACCGACAAAACCAACAGCTTCAACACCGACATCCTCAACATC
 
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JMFS019C03+           GTACCTTATATCCTACATTCCTTAATCCATTTCTTGGAACTCACCAGTGCCACCCGAATC
JMFS073G09+           GTACCTTATATCCTACATTCCTTAATCCATTTCTTGGAACTCACCAGTGCCACCCGAATC
JMFS016A04+                         ACATTCCTTAATCCATTTCTTGGAACTCACCAGTGCCACCCGAATC
JMFS051C12+           GTACCTTATATGCTACATTCCTTAATCCATTTCTTGGAACTCACCAGTGCCACCCGAATC
JMFS148C03+           GTACCTTATATCCTACATTCCTTAATCCATTTCTTGGAACTCACCAGTGCCACCCGAATC
                      ____________________________________________________________
consensus             GTACCTTATATCCTACATTCCTTAATCCATTTCTTGGAACTCACCAGTGCCACCCGAATC
 
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JMFS019C03+           AATCTCGACGAAAAACTTAATAGTTCATACATCCTCCCTCCTGTCAATCTAACAACACCT
JMFS073G09+           AATCTCGACGAAAAACTTCATAGTTCATACATCCTCCCTCCTGTCAATCTAACAACACCT
JMFS016A04+           AATCTCGACGAAAAACTTCATAGTTCATACATCCTCCCTCCTGTCAATCTAACAACACCT
JMFS051C12+           AATCTCGACGAAAAACTTCATAGTTCATACATCCTCCCTCCTGTCAATCTAACAACACCT
JMFS148C03+           AATCTCGACGAAAAACTTCATAGTTCATACATCCTCCCTCCTGTCAATCTAACAACACCT
                      ____________________________________________________________
consensus             AATCTCGACGAAAAACTTCATAGTTCATACATCCTCCCTCCTGTCAATCTAACAACACCT
 
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JMFS019C03+           TTCTAACACTCAATTCACTGAAATTCTCACATCCCCACTTGAAATTGGAAGAGCAGAACA
JMFS073G09+           TTCTAACACTCAATTCACTGAAATTCTCACATCCCCACTTGAAATTGGAAGAGCAGAACA
JMFS016A04+           TTCTAACACTCAATTCACTGAAATTCTCACATCCCCACTTGAAATTGGAAGAGCAGAACA
JMFS051C12+           TTCTAACACTCAATTAACTGAAATTCTCACATCCCCACTTGAAATTGGAAGAGCAGAACA
JMFS148C03+           TTCTAACACTCAATTCACTGAAATTCTCACATCCCCACTTGAAATTGGAAGAGCAGAACA
                      ____________________________________________________________
consensus             TTCTAACACTCAATTCACTGAAATTCTCACATCCCCACTTGAAATTGGAAGAGCAGAACA
 
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JMFS019C03+           AACCCCAAGAACATCCACTCCTCAGATCTCATCTTTCACCCCCACAACATCCACACACAT
JMFS073G09+           AACCCCAAGAACATCCACTCCTCAGATCTCATCTTTCACCCCCACAACATCCACACACAT
JMFS016A04+           AACCCCAAGAACATCCACTCCTCAGATCTCATGTTTCACCCCCACAACATCCACACACAT
JMFS051C12+           AACCCCAAGAACATCCACTCCTCAGATNTCATCTTTCACCCCCACAACATCCACACACAT
JMFS148C03+           AACCCCAAGAACATCCACTCCTCAGATCTCATCTTTCACCCCCACAACATCCACACACAT
                      ____________________________________________________________
consensus             AACCCCAAGAACATCCACTCCTCAGATCTCATCTTTCACCCCCACAACATCCACACACAT
 
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JMFS019C03+           ATATAAATGCATACACATATTTCATACTTCTCCCCCTCGCATTGCTCTCTCAAAACGACA
JMFS073G09+           ATATAAATGCATACACATATTTCATACTTCTCCCCCTCGCATTGCTCTCTCAAAACGACA
JMFS016A04+           ATATAAATGCATACACATATTTCATACTTCTCCCCCTCGCATTGCTCTCTCAAAACGACA
JMFS051C12+           ATATAAATGCATACACATATTTCATACTTCTCCCCCTCGCANNGCTCTCTCAAAACGACA
JMFS148C03+           ATATAAATGCATACACATATTTCATACTTCTCCCCCTCGCATTGCTCTCTCAAAACGACA
                      ____________________________________________________________
consensus             ATATAAATGCATACACATATTTCATACTTCTCCCCCTCGCATTGCTCTCTCAAAACGACA
 
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JMFS019C03+           AGAGAAACCGCCGTTTTCCCCCAGCACCACCGCCGCCA----CCGGAGGAGAATCTTCAA
JMFS073G09+           AGAGAAACCGCCGTTTTCCCCCAGCACCACCGCCGCCA----CCGGAGGAGAATCTTCAA
JMFS016A04+           AGAGAAACCGCCGTTTTCCCCCAGCACCACCGCCGCCA----CCGGAGGAGAATCTTCAA
JMFS051C12+           AGAGAAACCGCCGTTTTCTTTCTCATGCACCTCTTCTTTTTTCCGGAGGAGAATNTTCAA
JMFS148C03+           AGAGAAACCGCCGTTTTCCCCCAGCACCACCGCCGCCA----CCGGAGGAGAATCTTCAA
                      ____________________________________________________________
consensus             AGAGAAACCGCCGTTTTCCCCCAGCACCACCGCCGCCA----CCGGAGGAGAATCTTCAA
 
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JMFS019C03+           AGATCCAGCCGTACACAAACCGG                                     
JMFS073G09+           AGATCCAGCCGTACACAAACCGGGTACCACATTAGCACCCAGTTTCTGCACTCCAAAGCG
JMFS016A04+           AGATCCAGCCGTACACAAACCGGGTACCACATTAGCACCCAGTTTCTGCACTCCAAAGCG
JMFS051C12+           AGATCCAGCCGTACACAAACCGGGNACCACATTAGCACCCAGTTTTTGCACTCCAAAGCG
JMFS148C03+           AGATCCAGCCGTACACAAACCGGGTACCACATTAGCACCCAGTTTCTGCACTCCAAAGCG
                      ____________________________________________________________
consensus             AGATCCAGCCGTACACAAACCGGGTACCACATTAGCACCCAGTTTCTGCACTCCAAAGCG
 
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JMFS073G09+           TGGCGAGCTTAGCAGAGCAGGCCAAAAATGGGGGGGTTTTATTCACTCCCTACCCATCAA
JMFS016A04+           TGGCGAGCTTAGCAGAGCAGGCCAAAAATGGGGGGGTTTTATTCACTCCCTACCCATCAA
JMFS051C12+           TGGCTAGCTTAGCAGAGCAGGCCAAAAATGGGGGGGTTAAATTCACTCCCTACCCATCAA
JMFS148C03+           TGGCGAGCTTAGCAGAGCAGGCCAAAAATGGGGGGGTTTTATTCACTCCCTACCCATCAA
                      ____________________________________________________________
consensus             TGGCGAGCTTAGCAGAGCAGGCCAAAAATGGGGGGGTTTTATTCACTCCCTACCCATCAA
 
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JMFS073G09+           AGCTGCAGTTCCCATACACCCAACCATAAATACACATAAATATTATATTTAGTACACATG
JMFS016A04+           AGCTGCAGTTCCCATACACCCAACCATAAATACACATAAATATTATATTTAGTACACATG
JMFS051C12+           AGCNGCAGTTCCCANACACCCAACCATAAATACACATAAATANTANATTTAGTACACATG
JMFS148C03+           AGCTGCAGTTCCCATACACCCAACCATAAATACACATAAATATTATATTTAGTACACATG
                      ____________________________________________________________
consensus             AGCTGCAGTTCCCATACACCCAACCATAAATACACATAAATATTATATTTAGTACACATG
 
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JMFS073G09+           AATACTAGATTCAATGTTT                                         
JMFS016A04+           AATACTAGATTCAATGTTATGTTTATGTCATTCTCCAAGATTTTACCTAAGCTCTTA   
JMFS051C12+           AANANNAGATTCAATGTTT                                         
JMFS148C03+           AATACTAGATTCAATGTTTTGTTTATGTCATTCTCCAAGATTTTACCTAAGCTCTTATGT
                      ____________________________________________________________
consensus             AATACTAGATTCAATGTTTTGTTTATGTCATTCTCCAAGATTTTACCTAAGCTCTTATGT