Contig 004872:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS125B03+                                                                    AGT
JMFS017H05+                           TTCATATGCTGAAGCAGCTTCAAAAGAACCNCAGGCACCAGAGT
                      ____________________________________________________________
consensus                             TTCATATGCTGAAGCAGCTTCAAAAGAACCNCAGGCACCAGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS125B03+           AGCCATTCTTGAAACCTCCAATATGCGCCACCCCTCCTCAACAAATGAATCACACCCAGA
JMFS017H05+           AGCCATTCTTGAAACCTCCAATATGCGCCACCCCTCCTCAACAAATGAATCACACCCAGA
                      ____________________________________________________________
consensus             AGCCATTCTTGAAACCTCCAATATGCGCCACCCCTCCTCAACAAATGAATCACACCCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS125B03+           TTTCAAATGGGAGCACCACAAATCTTGCAAGAAAGGGGATTTGGAAGGGGAGATTTTTAC
JMFS017H05+           TTTCAAATGGGAGCACCACAAATCTTGCAAGAAAGGGGATTTGGAAGGGGAGATTTTTAC
JMFS146A08+                                                             AGATTTTTAC
                      ____________________________________________________________
consensus             TTTCAAATGGGAGCACCACAAATCTTGCAAGAAAGGGGATTTGGAAGGGGAGATTTTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS125B03+           GCCCAATGCCCTATTATGAAAAAAAGGGTCACATCCATGGATTCCTAAACAGAAAGGGCT
JMFS017H05+           GCCCAATGCCCTATTATG-AAAAAAGGGTCACATCCATGGATTCCTAAACAGAAAGGGCT
JMFS146A08+           GCCCAATGCCCTATTATGAAAAAAAGGGTCACATCCATGGATTCCTAAACAGAAAGGGCT
                      ____________________________________________________________
consensus             GCCCAATGCCCTATTATGAAAAAAAGGGTCACATCCATGGATTCCTAAACAGAAAGGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS125B03+           CACATTTCATACCCTATAAAAATTCAATAATGCAAGTACAACTCAAACAGGCCAAAGAAA
JMFS017H05+           CACATTTCATACCCTATAAAAATTCAATAATGCAAGTACAACTCAAACAGGCCAAAGAAA
JMFS146A08+           CACATTTCATACCCTATAAAAATTCAATAATGCAAGTACAACTCAAACAGGCCAAAGAAA
                      ____________________________________________________________
consensus             CACATTTCATACCCTATAAAAATTCAATAATGCAAGTACAACTCAAACAGGCCAAAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS125B03+           GTCACAATTTTTTTAATGTCCCAACAGTGTTTTTATTTTTATTTTTATTTTTTTAAACAA
JMFS017H05+           GTCACAATTTTTTTAATGTCCCAACAGTGTTTTTATTTTTATTTTTATTTTTTTAAACAA
JMFS146A08+           GTCACAATTTTTTTAATGTCCCAACAGTGTTTTTATTTTTATTTTTATTTTTTTAAACAA
                      ____________________________________________________________
consensus             GTCACAATTTTTTTAATGTCCCAACAGTGTTTTTATTTTTATTTTTATTTTTTTAAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS125B03+           AATACAAGAATGCAAAAAAAAACAGTAACCTTATTCAGATTTGCTACCAAATCAAACTAA
JMFS017H05+           AATACAAGAATGCAAAAAAAAACAGTAACCTTATTCAGATTTGCTACCAAATCAAACTAA
JMFS146A08+           AATACAAGAATGCAAAAAAAAACAGTAACCTTATTCAGATTTGCTACCAAATCAAACTAA
                      ____________________________________________________________
consensus             AATACAAGAATGCAAAAAAAAACAGTAACCTTATTCAGATTTGCTACCAAATCAAACTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS125B03+           ACCCAGCACATGATCCGGGCAGAAAGATTCAATCTTTGGGCAATATTACTGGTCAACGAT
JMFS017H05+           ACCCAGCACATGATCCGGGCAGAAAGATTCAATCTTTGGGCAATATTACTGGTCAACGAT
JMFS146A08+           ACCCAGCACATGATCCGGGCAGAAAGATTCAATCTTTGGGCAATATTACTGGTCAACGAT
                      ____________________________________________________________
consensus             ACCCAGCACATGATCCGGGCAGAAAGATTCAATCTTTGGGCAATATTACTGGTCAACGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS125B03+           GGCAAGGAGAAGACCCAACCATCCAAAAGGACTAAAACTCATGGAGGCTCTGCATTTATA
JMFS017H05+           GGCAAGGAGAAGACCCAACCATCCAAAAGGACTAAAACTCATGGAGGCTCTGCATTTATA
JMFS146A08+           GGCAAGGAGAAGACCCAACCATCCAAAAGGACTAAAACTCATGGAGGCTCTGCATTTATA
                      ____________________________________________________________
consensus             GGCAAGGAGAAGACCCAACCATCCAAAAGGACTAAAACTCATGGAGGCTCTGCATTTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS125B03+           CACCTGTGAGCAAAATAGAGGGGGGAACAAAACAGTGTATCTGCAAAATCCCAGATTGAA
JMFS017H05+           CACCTGTGAGCAAAATAGAGGGGGGAACAAAACAGTGTATCTGCAAAATCCCAGATTGAA
JMFS146A08+           CACCTGTGAGCAAAATAGAGGGGGGAACAAAACAGTGTATCTGCAAAATCCCAGATTGAA
                      ____________________________________________________________
consensus             CACCTGTGAGCAAAATAGAGGGGGGAACAAAACAGTGTATCTGCAAAATCCCAGATTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS125B03+           TAAGTAAAAAAATAAATAAGAAA                                     
JMFS017H05+           TAAGTAAAAAAATAAATAAGAAA                                     
JMFS146A08+           TAAGTAAAAAAATAAATAAGAAAGAATAAATATCAGCAATGATTAATGCGTATAGGTGAG
                      ____________________________________________________________
consensus             TAAGTAAAAAAATAAATAAGAAAGAATAAATATCAGCAATGATTAATGCGTATAGGTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS146A08+           AACAAAGGAAGAAGGTGTTATATTGGCTTTGACAGCCCTGGAAAAATGGGAAGTTTCAGT
                      ____________________________________________________________
consensus             AACAAAGGAAGAAGGTGTTATATTGGCTTTGACAGCCCTGGAAAAATGGGAAGTTTCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS146A08+           GGGGGGGTGAAAGGGGAAGTATATGAGGGATAGAGATGGGCAGAGGAGACTTGGAGAAGT
                      ____________________________________________________________
consensus             GGGGGGGTGAAAGGGGAAGTATATGAGGGATAGAGATGGGCAGAGGAGACTTGGAGAAGT