Contig 004871:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008N22+                                                          TCTGCAGTAGCTT
                      ____________________________________________________________
consensus                                                            TCTGCAGTAGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008N22+           CAACGCCTGCTCGAGCTCGTTCATCGATTCGTAAATAGCAGAAACATCAGTAAGACCGCT
                      ____________________________________________________________
consensus             CAACGCCTGCTCGAGCTCGTTCATCGATTCGTAAATAGCAGAAACATCAGTAAGACCGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF008N22+           GGCAATCTCTTCTGGGGCGACACCCGGTAATGGTTTTCCATAGATTCGAAGGGCGTTTTC
                      ____________________________________________________________
consensus             GGCAATCTCTTCTGGGGCGACACCCGGTAATGGTTTTCCATAGATTCGAAGGGCGTTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF016E18+                               GCAGTTTACCGGTCCGGTTATACAAGTCAGCCAGACGGAC
JMFF008N22+           GCAATAGGATTTTGATTCCCGCAGTTTACCGGTCCGGTTATACAAGTCAGCCAGACGGAC
                      ____________________________________________________________
consensus             GCAATAGGATTTTGATTCCCGCAGTTTACCGGTCCGGTTATACAAGTCAGCCAGACGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF016E18+           GAAAACCGAAGCAACAGATGGGTGAGTTTCTCCTTTGCCAGACTTGAGAGCTGTGAGTGC
JMFF008N22+           GAAAACCGAAGCAACAGATGGGTGAGTTTCTCCTTTGCCAGACTTGAGAGCTGTGAGTGC
                      ____________________________________________________________
consensus             GAAAACCGAAGCAACAGATGGGTGAGTTTCTCCTTTGCCAGACTTGAGAGCTGTGAGTGC
 
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JMFF016E18+           CTTCTGATACGCGAAAATGGCTTCGTCGTAGCGGTTTAGCGATAAATAAGTGTCTCCGAT
JMFF008N22+           CTTCTGATACGCGAAAATGGCTTCGTCGTAGCGGTTTAGCGATAAATAAGTGTCTCCGAT
                      ____________________________________________________________
consensus             CTTCTGATACGCGAAAATGGCTTCGTCGTAGCGGTTTAGCGATAAATAAGTGTCTCCGAT
 
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JMFF016E18+           ACTGCAATCGACAGATGCCACCTCGGTTTCCTGCCCGTTGGCCACCATGGCCATGCTTGC
JMFF008N22+           ACTGCAATCGACAGATGCCACCTCGGTTTCCTGCCCGTTGGCCACCATGGCCATGCTTGC
                      ____________________________________________________________
consensus             ACTGCAATCGACAGATGCCACCTCGGTTTCCTGCCCGTTGGCCACCATGGCCATGCTTGC
 
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JMFF016E18+           CAAAACGAGATGCTCGAGAGCAGCCTCGTGGTCTCCCTTCGACTCGCAAATTAACCCCAT
JMFF008N22+           CAAAACGAGATGCTCGAGAGCAGCCTCGTGGTCTCCCTTCGACTCGCAAATTAACCCCAT
                      ____________________________________________________________
consensus             CAAAACGAGATGCTCGAGAGCAGCCTCGTGGTCTCCCTTCGACTCGCAAATTAACCCCAT
 
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JMFF016E18+           CAGCCTCCTATCTGCTGCCTC                                       
JMFF008N22+           CAGCCTCCTATCTGCTGCCTCCTCGAGGGAAGGAGGTGAGCCGTTATCCCGGTGCATGTC
JMFS092F09+                                               TGAGCCGTTATCCCGGTGCATGTC
                      ____________________________________________________________
consensus             CAGCCTCCTATCTGCTGCCTCCTCGAGGGAAGGAGGTGAGCCGTTATCCCGGTGCATGTC
 
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JMFF008N22+           CAGAGCCATCTGGCAAAGTTTCTCAGCCTCGTCAAATTGCAACGCCTGAACGTGAGCTTC
JMFS092F09+           CAGAGCCATCTGGCAAAGTTTCTCAGCCTCGTCAAATTGCAACGCCTGAACGTGAGCTTC
                      ____________________________________________________________
consensus             CAGAGCCATCTGGCAAAGTTTCTCAGCCTCGTCAAATTGCAACGCCTGAACGTGAGCTTC
 
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JMFF008N22+           TGCCAGGTACCTGCACGTTTCGCCAACTCTCGGGTCGTTA                    
JMFS092F09+           TGCCAGGTACCTGCACGTTTCGCCAACTCTCGGGTCGTTATCCCCGAGAACTTGTCTTTG
                      ____________________________________________________________
consensus             TGCCAGGTACCTGCACGTTTCGCCAACTCTCGGGTCGTTATCCCCGAGAACTTGTCTTTG
 
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JMFS092F09+           GATTCCCAAACCTGTCGTATAACAAATAATCGAGTTCTCGACTTGGCCCAACATTGCATA
                      ____________________________________________________________
consensus             GATTCCCAAACCTGTCGTATAACAAATAATCGAGTTCTCGACTTGGCCCAACATTGCATA
 
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JMFS092F09+           AGTGTCACCCAACTGCATATATCCAGCGAATTTAGCCAGGGCGTGATCTTGGCCTTCCTC
                      ____________________________________________________________
consensus             AGTGTCACCCAACTGCATATATCCAGCGAATTTAGCCAGGGCGTGATCTTGGCCTTCCTC
 
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JMFS092F09+           GATCACGGGGATCTCGATCGAGTTTTCCAGTACGGTGTATAGCTGCTGTGACATGCAAGC
                      ____________________________________________________________
consensus             GATCACGGGGATCTCGATCGAGTTTTCCAGTACGGTGTATAGCTGCTGTGACATGCAAGC
 
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JMFS092F09+           ACATGACCACATCCAAGCTGGGCTTCCCGTCAGCACATTTTTCAAACGACTTGGCAGCTC
                      ____________________________________________________________
consensus             ACATGACCACATCCAAGCTGGGCTTCCCGTCAGCACATTTTTCAAACGACTTGGCAGCTC
 
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JMFS092F09+           GAAGAGCTAAATCGAGAGCTCTACGAGGGTTATCCCCGGAAGAAATCAAATCCCTTGCTT
                      ____________________________________________________________
consensus             GAAGAGCTAAATCGAGAGCTCTACGAGGGTTATCCCCGGAAGAAATCAAATCCCTTGCTT
 
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JMFS092F09+           GCTTGAGCAAGAACGGTCCAAGATCGGGATTTTCTACACCCGAATCAGACATATCCTCAG
                      ____________________________________________________________
consensus             GCTTGAGCAAGAACGGTCCAAGATCGGGATTTTCTACACCCGAATCAGACATATCCTCAG
 
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JMFS092F09+           TACCCTTCTTTTTATTCAAAGAGGAAACTCCCCTAGCTGGTTTTCTTTTTTCGCTCTGCT
JMSF023G19+                                                                      T
JMSF043O09+                                                                      T
                      ____________________________________________________________
consensus             TACCCTTCTTTTTATTCAAAGAGGAAACTCCCCTAGCTGGTTTTCTTTTTTCGCTCTGCT
 
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JMFS092F09+           TATCTACTGAAGGTTTCCCCGGAGGGCTTTTGCCTTTCGGACTTGATTTCCCCGAA    
JMSF023G19+           TATCTACTGAAGGTTTCCCCGGAGGGCTTTTGCCTTTCGGACTTGATTTCCCNGAAGCAT
JMSF043O09+           TATNTACTGAAGGTTTCCCCGGAGGGCTTTTGCCTTTCGGACTTGATTTCCCCGAAGCAT
JMSF026C10+                                                 GGACTTGATTTCCCNGAAGCAT
                      ____________________________________________________________
consensus             TATCTACTGAAGGTTTCCCCGGAGGGCTTTTGCCTTTCGGACTTGATTTCCCCGAAGCAT
 
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JMSF023G19+           CGGACTCCAACTGCGATTGAGAAGCTTTCTTCGATTTCCCCGACGGGGGAGTTTTGCTGG
JMSF043O09+           CGGACTCCAACTGCGATTGAGAAGCTTTCTTCGATTTCCCCGACGGGGGAGTTTTGCTGG
JMSF026C10+           CGGACTCCAANTGCGATTGAGAAGCTTTNTTCGATTTCCCCGACGGGGGAGTTTTGNTGG
                      ____________________________________________________________
consensus             CGGACTCCAACTGCGATTGAGAAGCTTTCTTCGATTTCCCCGACGGGGGAGTTTTGCTGG
 
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JMFF001K07+                                                          TTAGAACCAGAAT
JMSF023G19+           TTGAAGATTCGGAATTGCCCAACGCTGTAGTAGAAGAACTCTCCTTCTTAGAACCAGAAT
JMSF043O09+           TTGAAGATTCGGAATTGCCCAACGCTGTAGTAGAAGAACTCTCCTTCTTAGAACCAGAAT
JMSF026C10+           TTGAAGATTCGGAATTGCCCAACGCTGTAGTAGAAGAACTCTCCTTNTTAGAACCAGAAT
                      ____________________________________________________________
consensus             TTGAAGATTCGGAATTGCCCAACGCTGTAGTAGAAGAACTCTCCTTCTTAGAACCAGAAT
 
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JMFF001K07+           CACTACGGGAATCATCATTCCCATTCCCGGGCCTCTGCAACTCCTCGTCCTCCTCCATTA
JMSF023G19+           CACTACGGGAATCATCATTCCCATTCCCGGGCCTCTGCAACTCCTCGTCCTCCTCCATTA
JMSF043O09+           CACTACGGGAATCATCATTCCCATTCCCGGGCCTCTGCAACTCCTCGTCCTCCTCCATTA
JMSF026C10+           CANTACGGGAATCATCATTCCCATTCCCGGGCCTNTGCAACTCCTCGTCCTCCTCCATTA
                      ____________________________________________________________
consensus             CACTACGGGAATCATCATTCCCATTCCCGGGCCTCTGCAACTCCTCGTCCTCCTCCATTA
 
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JMFF001K07+           TCTCCACTTCCCTCATCTCCCCTCCCACGAGATGCCGCAACTCCGAATCTATTCTCGACT
JMSF023G19+           TCTCCACTTCCCTCATCTCCCCTCCCACGAGATGCCGCAACTCCGAATCTATTCTCGACT
JMSF043O09+           TCTCCACTTCCCTCATCTCCCCTCCCACGAGATGCCGCAACTCCGAATCTATTCTCGACT
JMSF026C10+           TCTCCACTTCCCTCATCTCCCCTCCCACGAGATGCCGCAACTCCGAATCTATTCTCGACT
                      ____________________________________________________________
consensus             TCTCCACTTCCCTCATCTCCCCTCCCACGAGATGCCGCAACTCCGAATCTATTCTCGACT
 
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JMFF001K07+           CATCCCCATCAGACCCGTAACTCTGCCTCGATGGCGAATGCTCAGAGCTCTGCATCTCGC
JMSF023G19+           CATCCCCATCAGACCCGTAACTCTGCCTCGATGGCGAATGCTCAGAGCTCTGCATCTCGC
JMSF043O09+           CATCCCCATCAGACCCGTAACTCTGCCTCGATGGCGAATGCTCAGAGCTCTGCATCTCGC
JMSF026C10+           CATCCCCATCAGACCCGTAACTCTGCCTCGATGGCGAATGCTCAGAGCTCTGCATCTCGC
                      ____________________________________________________________
consensus             CATCCCCATCAGACCCGTAACTCTGCCTCGATGGCGAATGCTCAGAGCTCTGCATCTCGC
 
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JMFF001K07+           ACACATTATCATAGAGCTCCTCAATAGATTTCTCGGCCACCCCATTCCCCGTATAGCCCG
JMSF023G19+           ACACATTATCATAGAGCTCCTCAATAGATTTCTCGGCCACCCCATTCCCCGTATAGCCCG
JMSF043O09+           ACACATTATCATAGAGCTCCTCAATAGATTTCTCGGCCACCCCATTCCCCGTATAGCCCG
JMSF026C10+           ACACATTATCATAGAGCTCCTCAATAGATTTCTCGGCCACCCCATTCCCCGTATAGCCCG
                      ____________________________________________________________
consensus             ACACATTATCATAGAGCTCCTCAATAGATTTCTCGGCCACCCCATTCCCCGTATAGCCCG
 
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JMFF001K07+           TTCCCCCATTCCGAGGGCTTTGAGATGCCAAACCATTCCTCGGAGACCCATTCACAACTA
JMSF023G19+           TTCCCCCATTCCGAGGGCTTTGAGATGCCAAACCATTCCTCGGAGACCCATTCACAACTA
JMSF043O09+           TTCCCCCATTCCGAGGGCTTTGAGATGCCAAACCATTCCTCGGAGACCCATTCACAACTA
JMSF026C10+           TTCCCCCATTCCGAGGGCTTTGAGATGCCAAACCATTCCTCGGAGACCCATTCACAACTA
                      ____________________________________________________________
consensus             TTCCCCCATTCCGAGGGCTTTGAGATGCCAAACCATTCCTCGGAGACCCATTCACAACTA
 
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JMFF001K07+           AATCGTCATTATGAACTCCAGAATTCTCATTCTCATTCTCCTTCAATTCACTATCCTCCC
JMSF023G19+           AATCGTCATTATGAACTCCAGAATTCTCATTCTCATTCTCCTTCAATTCACTATCCTCCC
JMSF043O09+           AATCGTCATTATGAACTCCAGAATTCTCATTCTCATTCTCCTTCAATTCACTATCCTCCC
JMSF026C10+           AATCGTCATTATGAACTCCAGAATTCTCATTCTCATTCTCCTTCAATTCACTATCCTCCC
JMFS145D02+                                                  CCTTCAATTCACTATCCTCCC
                      ____________________________________________________________
consensus             AATCGTCATTATGAACTCCAGAATTCTCATTCTCATTCTCCTTCAATTCACTATCCTCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF001K07+           TATCTTCATGAATCTCATCCACAACAACTCCAGGCATCTTTTAGCACCCACAGCAAGAAA
JMSF023G19+           TATCTTCATGAATCTCATCCACAACAACTCCAGGCATCTTTTAGCACCCACAGCAAGAAA
JMSF043O09+           TATCTTCATGAATCTCATCCACAACAACTCCAGGCATCTTTTAGCACCCACAGCAAGAAA
JMSF026C10+           TATCTTCATGAATCTCATCCACAACAACTCCAGGCATCTTTTAGCACCCACAGCAAGAAA
JMFS145D02+           TATCTTCATGAATCTCATCCACAACAACTCCAGGCATCTTTTAGCACCCACAGCAAGAAA
                      ____________________________________________________________
consensus             TATCTTCATGAATCTCATCCACAACAACTCCAGGCATCTTTTAGCACCCACAGCAAGAAA
 
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JMFF001K07+           AACCCCCAATAAATTAAATAACTTATCTGATAAAGAACCCACTGGAG             
JMSF023G19+           AACCCCCAATAAATTAAATAACTTATCTGATAAAGAACCCACTGGAG             
JMSF043O09+           AACCCCCAATAAATTAAATAACTTATCTGATAAAGAACCCACTGGAGGG           
JMSF026C10+           AACCCCCAATAAATTAAATAACTTATCTGATAAAGAACCCACTGGAGGG           
JMFS145D02+           AACCCCCAATAAATTAAATAACTTATCTGCAACCATTTGGTAAAGAAAACACAATCTTAG
                      ____________________________________________________________
consensus             AACCCCCAATAAATTAAATAACTTATCTGATAAAGAACCCACTGGAGGGCACAATCTTAG
 
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JMFS145D02+           AGAGCTAAAAGTTCAACCTTTCCATACCCACAAACTCTGCCAAGAAAATCCAGAAACAGA
                      ____________________________________________________________
consensus             AGAGCTAAAAGTTCAACCTTTCCATACCCACAAACTCTGCCAAGAAAATCCAGAAACAGA
 
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JMFS145D02+           TCTAGTACATATCATATGATGCATATATCTTGTGTACCCTATTCACCTTGACAGAAAAAG
                      ____________________________________________________________
consensus             TCTAGTACATATCATATGATGCATATATCTTGTGTACCCTATTCACCTTGACAGAAAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS145D02+           TTTGACCTTTAAAGCATTAAATAGACAAATTACTCCTACAGATTTGTCCACACATGAGAA
                      ____________________________________________________________
consensus             TTTGACCTTTAAAGCATTAAATAGACAAATTACTCCTACAGATTTGTCCACACATGAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS145D02+           AATAACAGTAACAGGAGCAATACAACAGCAAAATTCAATCTTTTAAATCAGGAAAAAAAG
                      ____________________________________________________________
consensus             AATAACAGTAACAGGAGCAATACAACAGCAAAATTCAATCTTTTAAATCAGGAAAAAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS145D02+           GGCATGAAAATTCAAACATTAAAATAGAAAATAGTTAAACAGATCTTAGCACATTAAGTA
                      ____________________________________________________________
consensus             GGCATGAAAATTCAAACATTAAAATAGAAAATAGTTAAACAGATCTTAGCACATTAAGTA
 
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JMFS145D02+           ACAATATCTACAGAAGCAAAACCCCATCAGAAACAGAAACAGAACCAGAAAGTACAAGTC
                      ____________________________________________________________
consensus             ACAATATCTACAGAAGCAAAACCCCATCAGAAACAGAAACAGAACCAGAAAGTACAAGTC
 
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JMFS145D02+           AATGAACAAGAAAATGCAAGAAAATGAAAGGGTATGATACTATGATGGGAAACAACAAAA
                      ____________________________________________________________
consensus             AATGAACAAGAAAATGCAAGAAAATGAAAGGGTATGATACTATGATGGGAAACAACAAAA
 
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JMFS145D02+           AGAAAATTTATTTAGCTGAGAAACAGAAAAAAGGGTAAAGCATACCTGATAAAGAACCCA
                      ____________________________________________________________
consensus             AGAAAATTTATTTAGCTGAGAAACAGAAAAAAGGGTAAAGCATACCTGATAAAGAACCCA