Contig 004869:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013B11+                                                                AAACTCC
JMFS040D06+                                          CATTCACTGTATCTAAAGAAGAAAACTCC
                      ____________________________________________________________
consensus                                            CATTCACTGTATCTAAAGAAGAAAACTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013B11+           ATGTCCTGAACAGGAATAGTATACGATGACATCAACATCCAAATCCCAATCATACAGAAC
JMFS040D06+           ATGTCCTGAACAGGAATAGTATACGATGACATCAACATCCAAATCCCAATCATACAGAAC
                      ____________________________________________________________
consensus             ATGTCCTGAACAGGAATAGTATACGATGACATCAACATCCAAATCCCAATCATACAGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013B11+           CCAAGCAAAGTCAGGATAGTAACTGTTGAATAACATTTGGATCTCCCTCCATTGGTCCGG
JMFS040D06+           CCAAGCAAAGTCAGGATAGTAACTGTTGAATAACATTTGGATCTCCCTCCATTGGTCCGG
                      ____________________________________________________________
consensus             CCAAGCAAAGTCAGGATAGTAACTGTTGAATAACATTTGGATCTCCCTCCATTGGTCCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013B11+           GAGATATTCCCAGAAGCCATTAGCCTTGAACTTCTGAAACAAGAAATATTAATAAATCTC
JMFS040D06+           GAGATATTCCCAGAAGCCATTAGCCTTGAACTTCTGAAACAAGAAATATTAATAAATCTC
                      ____________________________________________________________
consensus             GAGATATTCCCAGAAGCCATTAGCCTTGAACTTCTGAAACAAGAAATATTAATAAATCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013B11+           CTGAAACTGAGATAGATAATATGAATACATGAGTTGAGAAAAACAAAGATTCGATTCAAA
JMFS040D06+           CTGAAACTGAGATAGATAATATGAATACATGAGTTGAGAAAAACAAAGATTCGATTCAAA
JMFS136B04+                                    TACATGAGTTGAGAAAACCAAAGATTCGATTCAAA
                      ____________________________________________________________
consensus             CTGAAACTGAGATAGATAATATGAATACATGAGTTGAGAAAAACAAAGATTCGATTCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013B11+           ATTAGAACCAGAGTTATTGTTAATATATCATCTAAGCAAGCTTATAAATGGTCCTCCAGT
JMFS040D06+           ATTAGAACCAGAGTTATTGTTAATATATCATCTAAGCAAGCTTATAAATGGTCCTCCAGT
JMFS136B04+           ATTAGAACCAGAGTTATTGTTAATATATCATCTAAGCAAGCTTATAAATGGTCCTCCAGT
                      ____________________________________________________________
consensus             ATTAGAACCAGAGTTATTGTTAATATATCATCTAAGCAAGCTTATAAATGGTCCTCCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013B11+           ATGAAGAAATGAAATTAATGCTAATTAAAGAACAGAATCTGTCATCAAGAATTGTTACTC
JMFS040D06+           ATGAAGAAATGAAATTAATGCTAATTAAAGAACAGAATCTGTCATCAAGAATTGTTACTC
JMFS136B04+           ATGAAGAAATGAAATTAATGCTAATTAAAGAACAGAATCTGTCATCAAGAATTGTTACTC
                      ____________________________________________________________
consensus             ATGAAGAAATGAAATTAATGCTAATTAAAGAACAGAATCTGTCATCAAGAATTGTTACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013B11+           GCAGAACAACACACAAGTTAACTTCAATGGATCAAACAGAAACAGCATTCTTTAAGCTGA
JMFS040D06+           GCAGAACAACACACAAGTTAACTTCAATGGATCAAACAGAAACAGCATTCTTTAAGCTGA
JMFS136B04+           GCAGAACAACACACAAGTTAACTTCAATGGATCAAACAGAAACAGCATTCTTTAAGCTGA
                      ____________________________________________________________
consensus             GCAGAACAACACACAAGTTAACTTCAATGGATCAAACAGAAACAGCATTCTTTAAGCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013B11+           CATCAAGATTTGTAACTTGCAGATTAACATTGCATTGCATTTAAATTAGAAAGCATAATC
JMFS040D06+           CATCAAGATTTGTAACTTGCAGATTAACATTGCATTGCATTTAAATTAGAAAGCATAATC
JMFS136B04+           CATCAAGATTTGTAACTTGCAGATTAACATTGCATTGCATTTAAATTAGAAAGCATAATC
                      ____________________________________________________________
consensus             CATCAAGATTTGTAACTTGCAGATTAACATTGCATTGCATTTAAATTAGAAAGCATAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013B11+           TCTTCACTTGCACTGTGCACATAAAGCAAAAATCATATAATCATAAAAAAGGTAAAAAAT
JMFS040D06+           TCTTCACTTGCACTGTGCACATAAAGCAAAAATCATATAATCATAAAAAAGGTAAAAAAT
JMFS136B04+           TCTTCACTTGCACTGTGCACATAAAGCAAAAATCATATAATCATAAAAAAGGTAAAAAAT
                      ____________________________________________________________
consensus             TCTTCACTTGCACTGTGCACATAAAGCAAAAATCATATAATCATAAAAAAGGTAAAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013B11+           AAAGTTAAATACCGATTCAATTCCCCCTTTTCTCTACACTAGAGAATCAGAA        
JMFS040D06+           AAAGTTAAATACCGATTCAATTCCCCCTTTTCTCTACACTAGAGAATCAGAA        
JMFS136B04+           AAAGTTAAATACCGATTCAATTCCCCCTTTTCTCTACACTAGAGAATCAGAACAAAATAA
                      ____________________________________________________________
consensus             AAAGTTAAATACCGATTCAATTCCCCCTTTTCTCTACACTAGAGAATCAGAACAAAATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS136B04+           ACCTCTAAAAACAGATCCCTCCCCAACCCAAAAATAACCCATCCAGATCATAATAAATTA
                      ____________________________________________________________
consensus             ACCTCTAAAAACAGATCCCTCCCCAACCCAAAAATAACCCATCCAGATCATAATAAATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS136B04+           CACAACTATCTTCTAGATTTTAAACTTTTTTGTGCAAAAACGTGGGCAAAGAAGCTAACT
                      ____________________________________________________________
consensus             CACAACTATCTTCTAGATTTTAAACTTTTTTGTGCAAAAACGTGGGCAAAGAAGCTAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS136B04+           TTCCAGATCAAACAAGAACACTAGAAAGGAATATAAAAGCAGAGCATCGGCAAGCACCTC
                      ____________________________________________________________
consensus             TTCCAGATCAAACAAGAACACTAGAAAGGAATATAAAAGCAGAGCATCGGCAAGCACCTC