| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF028B20 | Sequence | 516 | 005217 (5) | emb|CDP17754.1| | 5e-28 | unnamed protein product [Coffea canephora] | 695 | 004866 (6) | gb|EYU35387.1| | 3e-04 | hypothetical protein MIMGU_mgv1a001660mg [Erythranthe guttata] |
| JMFF041O07 | Sequence | 651 | 005217 (5) | ref|XP_011087584.1| | 4e-127 | PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Sesamum indicu | 414 | 004866 (6) | gb|EYU35387.1| | 2e-06 | hypothetical protein MIMGU_mgv1a001660mg [Erythranthe guttata] |
| JMFS043H07 | Sequence | 416 | 004866 (6) | gb|EYU35387.1| | 5e-05 | hypothetical protein MIMGU_mgv1a001660mg [Erythranthe guttata] | |||||
| JMFS132B07 | Sequence | 623 | 004866 (6) | gb|EYU35387.1| | 1e-04 | hypothetical protein MIMGU_mgv1a001660mg [Erythranthe guttata] | |||||
| JMFS165A10 | Sequence | 602 | 004866 (6) | gb|EYU35387.1| | 1e-04 | hypothetical protein MIMGU_mgv1a001660mg [Erythranthe guttata] | |||||
| JMSF037L06 | Sequence | 655 | 005217 (5) | emb|CDP17754.1| | 2e-43 | unnamed protein product [Coffea canephora] | 711 | 004866 (6) | ref|XP_010546798.1| | 2e-11 | PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Tarenaya hassl |
This contig is upended
. : . : . : . : . : . :
rJMSF037L06+ CCTAAATCAGCCATTGCCTCCTGGAANCACTATAAC
____________________________________________________________
consensus CCTAAATCAGCCATTGCCTCCTGGAANCACTATAAC
. : . : . : . : . : . :
rJMSF037L06+ CAAGATTACAAAGTTGCCAGCTTTGCAAGATGATGGGCCCCCAAGTGATTTCTACGGAAG
rJMFF028B20+ TACAAAGTTGCCAGCTTTGCAAGATGATGGGCCCCCAAGTGATTTNTACGGAAG
____________________________________________________________
consensus CAAGATTACAAAGTTGCCAGCTTTGCAAGATGATGGGCCCCCAAGTGATTTCTACGGAAG
. : . : . : . : . : . :
rJMSF037L06+ GTTTTCAAACAGGGAAGGGGGCTCACGAGGAGGGTTCAGGGACCGAAGAGGTGGTAGAGG
rJMFF028B20+ GTTTTCAAACAGGGAAGGGGGCTCACGAGGAGGGTTCAGGGACCGAAGAGGTGGTAGAGG
JMFS165A10- GTAGAGG
____________________________________________________________
consensus GTTTTCAAACAGGGAAGGGGGCTCACGAGGAGGGTTCAGGGACCGAAGAGGTGGTAGAGG
. : . : . : . : . : . :
rJMSF037L06+ AGCTTCCCGGAGCTGGTCTAGTGGTCGATTCTCCAATAATGATAGTGATGACTTGGATGA
rJMFF028B20+ AGCTTCCCGGAGCTGGTCTAGTGGTCGATTCTCCAATAATGATAGTGATGACTTGGATGA
JMFS165A10- AGCTTCCCGGAGCTGGTCTAGTGGTCGATTCTCCAATAATGATAGTGATGACTTGGATGA
JMFS132B07+ AATGATAGTGATGACTTGGATGA
____________________________________________________________
consensus AGCTTCCCGGAGCTGGTCTAGTGGTCGATTCTCCAATAATGATAGTGATGACTTGGATGA
. : . : . : . : . : . :
rJMSF037L06+ TGGGTTTAGGCAGGGTGGGAGATCAAGAAGGGGAGGAAGTAACTTTGATGATGGGTTTAG
rJMFF028B20+ TGGGTTTAGGCAGGGTGGGAGATCAAGAAGGGGAGGAAGTAACTTTGATGATGGGTTTAG
JMFS165A10- TGGGTTTAGGCAGGGTGGGAGATCAAGAAGGGGAGGAAGTAACTTTGATGATGGGTTTAG
JMFS132B07+ TGGGTTTAGGCAGGGTGGGAGATCAAGAAGGGGAGGAAGTAACTTTGATGATGGGTTTAG
____________________________________________________________
consensus TGGGTTTAGGCAGGGTGGGAGATCAAGAAGGGGAGGAAGTAACTTTGATGATGGGTTTAG
. : . : . : . : . : . :
rJMSF037L06+ ACAGGGTGGGAGATCAAGAAGGGGAGGAAGTGATTGGCTGATTAGTGATTCGAGATCTAA
rJMFF028B20+ ACAGGGTGGGAGATCAAGAAGGGGAGGAAGTGATTGGCTGATTAGTGATTCGAGATCTAA
JMFS165A10- ACAGGGTGGGAGATCAAGAAGGGGAGGAAGTGATTGGCTGATTAGTGATTCGAGATCTAA
JMFS043H07- GATTAGTGATTCGAGATCTAA
JMFS132B07+ ACAGGGTGGGAGATCAAGAAGGGGAGGAAGTGATTGGCTGATTAGTGATTCGAGATCTAA
____________________________________________________________
consensus ACAGGGTGGGAGATCAAGAAGGGGAGGAAGTGATTGGCTGATTAGTGATTCGAGATCTAA
. : . : . : . : . : . :
rJMSF037L06+ CCGGTCATCATCATTCGGAGGAAACAGGGATAGGAACTTCAGTGGTGCATGTTTCAACTG
rJMFF028B20+ CCGGTCATCATCATTCGGAGGAAACAGGGATAGGAACTTCAGTGGTGCATGTTTCAACTG
JMFS165A10- CCGGTCATCATCATTCGGAGGAAACAGGGATAGGAACTTCAGTGGTGCATGTTTCAACTG
JMFS043H07- CCGGTCATCATCATTCGGAGGAAACAGGGATAGGAACTTCAGTGGTGCATGTTTCAACTG
rJMFF041O07+ AGGAACTTCAGTGGTGCATGTTTCAACTG
JMFS132B07+ CCGGTCATCATCATTCGGAGGAAACAGGGATAGGAACTTCAGTGGTGCATGTTTCAACTG
____________________________________________________________
consensus CCGGTCATCATCATTCGGAGGAAACAGGGATAGGAACTTCAGTGGTGCATGTTTCAACTG
. : . : . : . : . : . :
rJMSF037L06+ TGGGCAAACTGGTCACCGAGCATATAAATGCCCTAGCAAGCGCGGTGGCTATTAGAACTG
rJMFF028B20+ TGGGCAAACTGGTCACCGAGCATATAAATGCCCTAGCAAGCGCGGTGGCTATTAGAACTG
JMFS165A10- TGGGCAAACTGGTCACCGAGCATATAAATGCCCTAGCAAGCGCGGTGGCTATTAGAACTG
JMFS043H07- TGGGCAAACTGGTCACCGAGCATATAAATGCCCTAGCAAGCGCGGTGGCTATTAGAACTG
rJMFF041O07+ TGGGCAAACTGGTCACCGAGCATATAAATGCCCTAGCAAGCGCGGTGGCTATTAGAACTG
JMFS132B07+ TGGGCAAACTGGTCACCGAGCATATAAATGCCCTAGCAAGCGCGGTGGCTATTAGAACTG
____________________________________________________________
consensus TGGGCAAACTGGTCACCGAGCATATAAATGCCCTAGCAAGCGCGGTGGCTATTAGAACTG
. : . : . : . : . : . :
rJMSF037L06+ ATGGTTGTCGAAAACTCCTAAATCTCCCTTTACTGCACTGACTGATGAAAACCTGGAGAT
rJMFF028B20+ ATGGTTGTCGAAAACTCCTAAATCTCCCTTTGCTGCACTGACTGATGAAAACCTGGAGAT
JMFS165A10- ATGGTTGTCGAAAACTCCTAAATCTCCCTTTACTGCACTGACTGATGAAAACCTGGAGAT
JMFS043H07- ATGGTTGTCGAAAACTCCTAAATCTCCCTTTACTGCACTGACTGATGAAAACCTGGAGAT
rJMFF041O07+ ATGGTTGTCGAAAACTCCTAAATCTCCCTTTACTGCACTGACTGATGAAAACCTGGAGAT
JMFS132B07+ ATGGTTGTCGAAAACTCCTAAATCTCCCTTTACTGCACTGACTGATGAAAACCTGGAGAT
____________________________________________________________
consensus ATGGTTGTCGAAAACTCCTAAATCTCCCTTTACTGCACTGACTGATGAAAACCTGGAGAT
. : . : . : . : . : . :
rJMSF037L06+ CATTCCTGCAAGCATATCATTCACATTTCACACAGGAGCTGCAGCCAGCTGCAACAACAA
rJMFF028B20+ CATTCCTGCAAGCATATCATTCACATTTCACACAGGAGCTGCAGCCAGCTGCAACAACAA
JMFS165A10- CATTCCTGCAAGCATATCATTCACATTTCACACAGGAGCTGCAGCCAGCTGCAACAACAA
JMFS043H07- CATTCCTGCAAGCATATCATTCACATTTCACACAGGAGCTGCAGCCAGCTGCAACAACAA
rJMFF041O07+ CATTCCTGCAAGCATATCATTCACATTTCACACAGGAGCTGCAGCCAGCTGCAACAACAA
JMFS132B07+ CATTCCTGCAAGCATATCATTCACATTTCACACAGGAGCTGCAGCCAGCTGCAACAACAA
____________________________________________________________
consensus CATTCCTGCAAGCATATCATTCACATTTCACACAGGAGCTGCAGCCAGCTGCAACAACAA
. : . : . : . : . : . :
rJMSF037L06+ TTGCTTACTACCCCCCGGTGCCGGTGGTGTATCCTCCAACTTTCTCTAAACCTTATTAGA
rJMFF028B20+ TTGCTTACTACCCCCCGGTGCCGGTGGTGTATCCTCCAACTTTCTCTAAACCTTATTAGA
JMFS165A10- TTGCTTACTACCCCCCGGTGCCGGTGGTGTATCCTCCAACTTTCTCTAAACCTTATTAGA
JMFS043H07- TTGCTTACTACCCCCCGGTGCCGGTGGTGTATCCTCCAACTTTCTCTAAACCTTATTAGA
rJMFF041O07+ TTGCTTACTACCCCCCGGTGCCGGTGGTGTATCCTCCAACTTTCTTTAAACCTTATTAGA
JMFS132B07+ TTGCTTACTACCCCCCGGTGCCGGTGGTGTATCCTCCAACTTTCTCTAAACCTTATTAGA
____________________________________________________________
consensus TTGCTTACTACCCCCCGGTGCCGGTGGTGTATCCTCCAACTTTCTCTAAACCTTATTAGA
. : . : . : . : . : . :
rJMSF037L06+ GTGTAGTATGTATAATGTTTAATCTAAATTTTGCTGCTGCTTTTATGCAGACATACTATC
rJMFF028B20+ GTGTAGTATGTATAATGTTTAATCTAAATTTTGCTGCTGCTTTTATGCAGACATACTATC
JMFS165A10- GTGTAGTATGTATAATGTTTAATCTAAATTTTGCTGCTGCTTTTATGCAGACATACTATC
JMFS043H07- GTGTAGTATGTATAATGTTTAATCTAAATTTTGCTGCTGCTTTTATGCAGACATACTATC
rJMFF041O07+ GTGTAGTATGTATAATGTTTAATTTAAATTTTGCTGCTGCTTTTATGCAGACATACTATC
JMFS132B07+ GTGTAGTATGTATAATGTTTAATCTAAATTTTGCTGCTGCTTTTATGCAGACATACTATC
____________________________________________________________
consensus GTGTAGTATGTATAATGTTTAATCTAAATTTTGCTGCTGCTTTTATGCAGACATACTATC
. : . : . : . : . : . :
rJMSF037L06+ TATATCTATATCTAT
rJMFF028B20+ TATATCTATATCTATACTTGACACGGTTCAAAATGATATTA
JMFS165A10- TATATCTATATCTATACTTGACACGGTTCAAAATGATATTATGACATTGATTTTT
JMFS043H07- TATATCTATATCTATACTTGACACGGTTCAAAATG
rJMFF041O07+ TATATCTATATCTATACTTGACCCGGTTCAAAATGATATTATGACATTGATTTTTTTTGC
JMFS132B07+ TATATCTATATCTATACTTGACACGGTTCAAAATGATATTATGACATTGATTTTTTCTGC
____________________________________________________________
consensus TATATCTATATCTATACTTGACACGGTTCAAAATGATATTATGACATTGATTTTTTTTGC
. : . : . : . : . : . :
rJMFF041O07+ ATTTTATGATGATTTTGTTTCCTGC
JMFS132B07+ ATTTTATGATGATTTTGTTTCCTGCAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC
____________________________________________________________
consensus ATTTTATGATGATTTTGTTTCCTGCAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC