Contig 004861:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS006C12Sequence569004861 (5)
JMFS127C07Sequence633004861 (5)emb|CAE17317.1|3e-24villin 2 [Nicotiana tabacum]
JMSF033M22Sequence328003761 (3)663004861 (5)emb|CAE17317.1|9e-21villin 2 [Nicotiana tabacum]
JMSF045B19Sequence702003761 (3)gb|KCW48016.1|8e-77hypothetical protein EUGRSUZ_K017494, partial [Eucalyptus grandis] gb|KCW48017.1701004861 (5)emb|CDP14114.1|1e-29unnamed protein product [Coffea canephora]
JMSF051J04Sequence209004861 (5)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033M22+                                                    CAGCAAGAACAGGATGAC
rJMSF045B19+                     GGCCAATGGTGAGGGGTGTGAATTAAAGACACAGCAAGAACAGGATGAC
                      ____________________________________________________________
consensus                        GGCCAATGGTGAGGGGTGTGAATTAAAGACACAGCAAGAACAGGATGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033M22+          NATAACAGTGAAGGTAGTCCGACCATATTCAGTTATGAAAGG-TGAAGGTTAAATCTGCG
rJMSF045B19+          AATAACAGTGAAGGTAGTCCGACCATATTCAGTTATGAAAGGTTGAAGGTTAAATCTGCG
JMFS127C07-                                                      TGAAGGTTAAATCTGCG
                      ____________________________________________________________
consensus             AATAACAGTGAAGGTAGTCCGACCATATTCAGTTATGAAAGGTTGAAGGTTAAATCTGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033M22+          AACCCTGTTACTGGGATTGATTTTAAACGGAGAGAGGCTTATCTATCTGATGGGGAATTT
rJMSF045B19+          AACCCTGTTACTGGGATTGATTTTAAACGGAGAGAGGCTTATCTATCTGATGGGGAATTT
JMFS127C07-           AACCCTGTTACTGGGATTGATTTTAAACGGAGAGAGGCTTATCTATCTGATGGGGAATTT
                      ____________________________________________________________
consensus             AACCCTGTTACTGGGATTGATTTTAAACGGAGAGAGGCTTATCTATCTGATGGGGAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033M22+          GAGGCTGTTCTTGGAATGAAGAAGGAAGCCTTCTATAAGATACCAAAATGGAAACAAGAC
JMFS006C12-                                                     CCAAGATGGAAACAAGAC
rJMSF045B19+          GAGGCTGTTCTTGGAATGAAGAAGGAAGCCTTCTATAAGATACCAAAATGGAAACAAGAC
JMFS127C07-           GAGGCTGTTCTTGGAATGAAGAAGGAAGCCTTCTATAAGATACCAAAATGGAAACAAGAC
                      ____________________________________________________________
consensus             GAGGCTGTTCTTGGAATGAAGAAGGAAGCCTTCTATAAGATACCAAAATGGAAACAAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033M22+          ATGCAGAAAAAGAAGGCTGATCTCTTCTAGATTCCACATCCAAAGCCAAGCAACTTCTCC
JMFS006C12-           ATGCAGAAAAAGAAGGCTGATCTCTTCTAGATTCCACATCCAAAGCCAAGCAACTTCTCC
rJMSF045B19+          ATGCAGAAAAAGAAGGCTGATCTCTTCTAGATTCCACATCCAAAGCCAAGCAACTTCTCC
JMFS127C07-           ATGCAGAAAAAGAAGGCTGATCTCTTCTAGATTCCACATCCAAAGCCAAGCAACTTCTCC
                      ____________________________________________________________
consensus             ATGCAGAAAAAGAAGGCTGATCTCTTCTAGATTCCACATCCAAAGCCAAGCAACTTCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033M22+          CACTCTTCCCCTCTTTCAAGCTCATCTTTCGTTCTACAAGTTTTTCTTGCCAGAGCAACC
JMFS006C12-           CACTCTTCCCCTCTTTCAAGCTCATCTTTCGTTCTACAAGTTTTTCTTGCCAGAGCAACC
rJMSF045B19+          CACTCTTCCCCTCTTTCAAGCTCATCTTTCGTTCTACAAGTTTTTCTTGCCAGAGCAACC
JMFS127C07-           CACTCTTCCCCTCTTTCAAGCTCATCTTTCGTTCTACAAGTTTTTCTTGCCAGAGCAACC
                      ____________________________________________________________
consensus             CACTCTTCCCCTCTTTCAAGCTCATCTTTCGTTCTACAAGTTTTTCTTGCCAGAGCAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033M22+          ACCTATCTTTTATAGGTACATAATGCCTGGATAGAATATCTAGCATTTCTACAATCTTCC
JMFS006C12-           ACCTATCTTTTATAGGTACATAATGCCTGGATAGAATATCTAGCATTTCTACAATCTTCC
rJMSF045B19+          ACCTATCTTTTATAGGTACATAATGCCTGGATAGAATATCTAGCATTTCTACAATCTTCC
JMFS127C07-           ACCTATCTTTTATAGGTACATAATGCCTGGATAGAATATCTAGCATTTCTACAATCTTCC
                      ____________________________________________________________
consensus             ACCTATCTTTTATAGGTACATAATGCCTGGATAGAATATCTAGCATTTCTACAATCTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033M22+          TTTGAAATACCTTTAGCTTTTGGTAGTTTCAAATTTCTGCTATCTGCCTGCTTGAAGAGT
rJMSF051J04+                                                          TGCTTGAAGAGT
JMFS006C12-           TTTGAAATACCTTTAGCTTTTGGTAGTTTCAAATTTCTGCTATCTGCCTGCTTGAAGAGT
rJMSF045B19+          TTTGAAATACCTTTAGCTTTTGGTAGTTTCAAATTTCTGCTATCTGCCTGCTTGAAGAGT
JMFS127C07-           TTTGAAATACCTTTAGCTTTTGGTAGTTTCAAATTTCTGCTATCTGCCTGCTTGAAGAGT
                      ____________________________________________________________
consensus             TTTGAAATACCTTTAGCTTTTGGTAGTTTCAAATTTCTGCTATCTGCCTGCTTGAAGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033M22+          GATTTTTTTACTCCCCTCTTTTAATACTGCCATTTTGCCGAGATCCAAAGATTGCAGTTA
rJMSF051J04+          GATTTTTTTNCTCCCCTCTTTTAATACTGCCATTCTGCCGAGATCCAAAGATTGCAGTTA
JMFS006C12-           GATTTTTTTACTCCCCTCTTTTAATACTGCCATTTTGCCGAGATCCAAAGATTGCAGTTA
rJMSF045B19+          GATTTTTTTACTCCCCTCTTTTAATACTGCCATTTTGCCGAGATCCAAAGATTGCAGTTA
JMFS127C07-           GATTTTTTTACTCCCCTCTTTTAATACTGCCATTTTGCCGAGATCCAAAGATTGCAGTTA
                      ____________________________________________________________
consensus             GATTTTTTTACTCCCCTCTTTTAATACTGCCATTTTGCCGAGATCCAAAGATTGCAGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033M22+          CAATGACAGCAGCCAGGTCGATTCTTTGATTTGCGCAGTTTGTGATTTTTCGAAGTTAAG
rJMSF051J04+          CAATGACAGCAGCCAGGTCGATTCTNNGATTTGCGCAGTTTGNGATTTTTCGAAGTTAAG
JMFS006C12-           CAATGACAGCAGCCAGGTCGATTCTTTGATTTGCGCAGTTTGTGATTTTTCGAAGTTAAG
rJMSF045B19+          CAATGACAGCAGCCAGGTCGATTCTTTGATTTGCGCAGTTTGTGATTTTTCGAAGTTAAG
JMFS127C07-           CAATGACAGCAGCCAGGTCGATTCTTTGATTTGCGCAGTTTGTGATTTTTCGAAGTTAAG
                      ____________________________________________________________
consensus             CAATGACAGCAGCCAGGTCGATTCTTTGATTTGCGCAGTTTGTGATTTTTCGAAGTTAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033M22+          TTTCTTTCAATCATTTATTCGNTGATCAAAAAGGGTGTATATGTATTTTGCTTTGTACTC
rJMSF051J04+          TTTCTTTCAATCATTTATTCGTNGATCAAAAAGGGNGTATATGTATTTTGCTTTNTACTC
JMFS006C12-           TTTCTTTCAATCATTTATTCGTTGATCAAAAAGGGTGTATATGTATTTTGCTTTGTACTC
rJMSF045B19+          TTTCTTTCAATCATTTATTCGTTGATCAAAAAGGGTGTATATGTATTTTGCTTTGTACTC
JMFS127C07-           TTTCTTTCAATCATTTATTCGTTGATCAAAAAGGGTGTATATGTATTTTGCTTTGTACTC
                      ____________________________________________________________
consensus             TTTCTTTCAATCATTTATTCGTTGATCAAAAAGGGTGTATATGTATTTTGCTTTGTACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033M22+          AGAATGATGAAATGCAGACAAATAGTGGTT                              
rJMSF051J04+          AGAATGATGAAANGCAG                                           
JMFS006C12-           AGAATGATGAAATGCAGACAAATAGTGGTT                              
rJMSF045B19+          AGAATGATGAAATGCAGACAAATAGTGGTTTGGACTCGGACTT                 
JMFS127C07-           AGAATGATGAAATGCAGACANATAGTGGTTTGGACTCGGACTTTCCACCCGACCATTTCC
                      ____________________________________________________________
consensus             AGAATGATGAAATGCAGACAAATAGTGGTTTGGACTCGGACTTTCCACCCGACCATTTCC