Contig 004860:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS126G12Sequence614004860 (2)ref|XP_009623640.1|7e-90PREDICTED: proteasome activator subunit 4 isoform X2 [Nicotiana tomentosiformis
JMFS126H04Sequence398004860 (2)ref|XP_009623640.1|2e-53PREDICTED: proteasome activator subunit 4 isoform X2 [Nicotiana tomentosiformis

Alignment

This contig is upended


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JMFS126G12+                                                         ATCCGTTGTCAAAC
                      ____________________________________________________________
consensus                                                           ATCCGTTGTCAAAC
 
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JMFS126G12+           ATTTAAGAACAGTNTGTGTTGCAAGGACTGCACAAGAACCTAACACTGCATATTCAGGTG
                      ____________________________________________________________
consensus             ATTTAAGAACAGTNTGTGTTGCAAGGACTGCACAAGAACCTAACACTGCATATTCAGGTG
 
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JMFS126G12+           AGCTTGGATTCCTCAAATTTTCACTGAGAGTGAGCACACACTTCGGAATAGTAAATGGCC
                      ____________________________________________________________
consensus             AGCTTGGATTCCTCAAATTTTCACTGAGAGTGAGCACACACTTCGGAATAGTAAATGGCC
 
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JMFS126G12+           ATCTTTTCATCATCTTCAGAAGAGATTTTCCAGCGATTGCACGGACTGTTTCATAGCTAT
                      ____________________________________________________________
consensus             ATCTTTTCATCATCTTCAGAAGAGATTTTCCAGCGATTGCACGGACTGTTTCATAGCTAT
 
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JMFS126H04+                                 ATCCATCAAAAGTATCACACGGTCAGATGGAGACAGAT
JMFS126G12+           GTAAAGAGAGAGTAAGAAGATCATCCATCAAAAGTATCACACGGTCAGATGGAGACAGAT
                      ____________________________________________________________
consensus             GTAAAGAGAGAGTAAGAAGATCATCCATCAAAAGTATCACACGGTCAGATGGAGACAGAT
 
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JMFS126H04+           TCGCCTTCATCCGGAAAAGATGATATGACGACTGCGAAGCTCTCCAAGTACTATGCATAT
JMFS126G12+           TCGCCTTCATCCGGAAAAGATGATATGACGACTGCGAAGCTCTCCAAGTACTATGCATAT
                      ____________________________________________________________
consensus             TCGCCTTCATCCGGAAAAGATGATATGACGACTGCGAAGCTCTCCAAGTACTATGCATAT
 
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JMFS126H04+           ATGCTTTGTCAATAAGTGCCCATCTAGATCTTCTTTTGCCTTTAGAATGAGATGACACAA
JMFS126G12+           ATGCTTTGTCAATAAGTGCCCATCTAGATCTTCTTTTGCCTTTAGAATGAGATGACACAA
                      ____________________________________________________________
consensus             ATGCTTTGTCAATAAGTGCCCATCTAGATCTTCTTTTGCCTTTAGAATGAGATGACACAA
 
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JMFS126H04+           TGAAATTAACTGGAGGTTCTACAATGGCAGCAGATTCCAGTTTCCAGGCCTGTCGGTGAT
JMFS126G12+           TGAAATTAACTGGAGGTTCTACAATGGCAGCAGATTCCAGTTTCCAGGCCTGTCGGTGAT
                      ____________________________________________________________
consensus             TGAAATTAACTGGAGGTTCTACAATGGCAGCAGATTCCAGTTTCCAGGCCTGTCGGTGAT
 
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JMFS126H04+           TTGACCACTCATCATATTCTGAACTCCCATAATTTCCTAAAGAATCCATTATCCGAATGA
JMFS126G12+           TTGACCACTCATCATATTCTGAACTCCCATAATTTCCTAAAGAATCCATTATACGAATGA
                      ____________________________________________________________
consensus             TTGACCACTCATCATATTCTGAACTCCCATAATTTCCTAAAGAATCCATTATCCGAATGA
 
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JMFS126H04+           GAAGCAATAACAAAATGCTATCGTCAGACTTTTCCTCCAGTAAGTATAGGCAAGCTGAAT
JMFS126G12+           GAAGCAATAACAAAATGCTATCGTCAGACTTTTCCTCCAGTAAGTATAGGCAAGCTGAAT
                      ____________________________________________________________
consensus             GAAGCAATAACAAAATGCTATCGTCAGACTTTTCCTCCAGTAAGTATAGGCAAGCTGAAT
 
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JMFS126H04+           GAATAACATCAGTGGCTTTCTCTCGCAGTTCAGCACTGCCAACACATGAACCTGTTGCTC
JMFS126G12+           GAATAACATCAGTGGCTTTCTCTCGCAGTTCAGCACTGCCAACACATGAACCTGTTGCTC
                      ____________________________________________________________
consensus             GAATAACATCAGTGGCTTTCTCTCGCAGTTCAGCACTGCCAACACATGAACCTGTTGCTC