Contig 004849:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS107F08Sequence624004849 (2)ref|XP_006365636.1|9e-121PREDICTED: auxin response factor 19-like [Solanum tuberosum]
JMFS123B07Sequence565004849 (2)ref|XP_009762810.1|3e-106PREDICTED: auxin response factor 19-like isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS107F08+                                               CCTCCAGCCAGGTTCTGTAGAACC
                      ____________________________________________________________
consensus                                                 CCTCCAGCCAGGTTCTGTAGAACC
 
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JMFS123B07+                                       GCTGCATCGTGTTGGTCAGGGAAGGGTTCGAC
JMFS107F08+           GATCCAGATAACGAATGCAAATAGTTTGGCTGCATCGTGTTGGTCAGGGAAGGGTTCGAC
                      ____________________________________________________________
consensus             GATCCAGATAACGAATGCAAATAGTTTGGCTGCATCGTGTTGGTCAGGGAAGGGTTCGAC
 
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JMFS123B07+           TGCATGTTCATCCACTGGGCTAGGCTCAGACCGGGAAGAGCCTGTGGATCCTTCATGCCA
JMFS107F08+           TGCATGTTCATCCACTGGGCTAGGCTCAGACCGGGAAGAGCCTGTGGATCCTTCATGCCA
                      ____________________________________________________________
consensus             TGCATGTTCATCCACTGGGCTAGGCTCAGACCGGGAAGAGCCTGTGGATCCTTCATGCCA
 
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JMFS123B07+           AAGTCATCACCAATCCATGGCATTGTCCTTTTGAAAAAACCATCCAGATCGGAAGCGTCA
JMFS107F08+           AAGTCATCACCAATCCATGGCATTGTCCTTTTGAAAAAACTATCCAGATCGGAAGCGTCA
                      ____________________________________________________________
consensus             AAGTCATCACCAATCCATGGCATTGTCCTTTTGAAAAAACTATCCAGATCGGAAGCGTCA
 
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JMFS123B07+           TCATCTGGCATCCCGGGTTGCCTTGGACGCTTTGCTCTAAAGAATGGAGGAGTAGGGCAA
JMFS107F08+           TCATCTGGCATCCCGGGTTGCCTTGGACGCTTTGCTCTAAAGAATGGAGGAGTAGGGCAA
                      ____________________________________________________________
consensus             TCATCTGGCATCCCGGGTTGCCTTGGACGCTTTGCTCTAAAGAATGGAGGAGTAGGGCAA
 
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JMFS123B07+           AGGAAAAACGGTGCTGTAACGGGTTCAATCTCCCAAATCGAGACTCGACTACGCCTCTCT
JMFS107F08+           AGGAAAAACGGTGCTGTAACGGGTTCAATCTCCCAAATCGAGACTCGACTACGCCTCTCT
                      ____________________________________________________________
consensus             AGGAAAAACGGTGCTGTAACGGGTTCAATCTCCCAAATCGAGACTCGACTACGCCTCTCT
 
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JMFS123B07+           CCAGCAGTTGATTCATCCCAACCAACCTGCAACTTACGCCACTGTGAACCCTTCCACCTC
JMFS107F08+           CCAGCAGTTGATTCATCCCAACCAACCTGCAACTTACGCCACTGTGAACCCTTCCACCTC
                      ____________________________________________________________
consensus             CCAGCAGTTGATTCATCCCAACCAACCTGCAACTTACGCCACTGTGAACCCTTCCACCTC
 
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JMFS123B07+           ACCGGATCCAAATCACTTATGCCAGTAATGGTGCCCATATACCTTCTGGTTACCGATTCC
JMFS107F08+           ACCGGATCCAAATCACTTATGCCAGTAATGGTGCCCATATACCTTCTGGTTCCCGATTCC
                      ____________________________________________________________
consensus             ACCGGATCCAAATCACTTATGCCAGTAATGGTGCCCATATACCTTCTGGTTCCCGATTCC
 
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JMFS123B07+           TCTGTCTCGAACATCATGCGAAACCGCATACCAAGGGATACTTGGTTGCCATAAACTGCT
JMFS107F08+           TCTGTCTCGAACATCATGCGAAACCGCATACCAAGGGATACTTGGTTGCCATAAACTGCT
                      ____________________________________________________________
consensus             TCTGTCTCGAACATCATGCGAAACCGCATACCAAGGGATACTTGGTTGCCATAAACTGCT
 
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JMFS123B07+           TTGTAGTACTTCGCCAAAGGGATAAAAAACTCTGAAGGACTAGCCCTTGGGTTATAAAAC
JMFS107F08+           TTGTAGTACTTCGCCAAAGGGATAACAAACTCTGAAGGACTAGCCCTTGGGTTATAAAAC
                      ____________________________________________________________
consensus             TTGTAGTACTTCGCCAAAGGGATAACAAACTCTGAAGGACTAGCCCTTGGGTTATAAAAC
 
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JMFS123B07+           ACGGTGAAAGGGCTGTTGTTTGCAGATGCATGGGCTGCAGCAGCTAGGATCCC       
JMFS107F08+           ACGGTGAAAGGGCTGTTGTTTGCAGATGCATGGGCTGCAGCAGCTAGGATCCCGATATGC
                      ____________________________________________________________
consensus             ACGGTGAAAGGGCTGTTGTTTGCAGATGCATGGGCTGCAGCAGCTAGGATCCCGATATGC