Contig 004843:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS064B11Sequence621004843 (3)ref|XP_009796828.1|6e-40PREDICTED: putative disease resistance protein RGA3 [Nicotiana sylvestris]
JMFS104E10Sequence624004843 (3)ref|XP_009796828.1|5e-32PREDICTED: putative disease resistance protein RGA3 [Nicotiana sylvestris]
JMSF024N11Sequence644004843 (3)ref|XP_009796828.1|2e-43PREDICTED: putative disease resistance protein RGA3 [Nicotiana sylvestris]887011049 (2)ref|XP_009796828.1|8e-26PREDICTED: putative disease resistance protein RGA3 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS104E10+                                      GCATCAATTCTTGATGATCAGAGTGTGATGATG
                      ____________________________________________________________
consensus                                        GCATCAATTCTTGATGATCAGAGTGTGATGATG
 
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JMFS064B11+                                         CAAATTTGAACTGATCTTTCTCTTTCGTAA
JMSF024N11+                                         CAAATTTGAACTGATCTTTCTCTTTCGTAA
JMFS104E10+           CTGCAGAAGTGTGTGTTATTGATGCATAATCAAATTTGAACTGATCTTTCTCTTTCGTAA
                      ____________________________________________________________
consensus             CTGCAGAAGTGTGTGTTATTGATGCATAATCAAATTTGAACTGATCTTTCTCTTTCGTAA
 
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JMFS064B11+           TCCGATCAAGTGTTGAATCAAGTTCCTTTATTTTCTTGGCGATGTCTCGATGCATAGCAA
JMSF024N11+           TCCGATCAAGTGTTGAATCAAGCTCCTTTATTTTCTTGGCGATGTCTCGATGCATAGCAA
JMFS104E10+           TCCGATCAAGTGTTGAATCAAGCTCCTTTATTTTCTTGGCGATGTCTCGATGCATAGCAA
                      ____________________________________________________________
consensus             TCCGATCAAGTGTTGAATCAAGCTCCTTTATTTTCTTGGCGATGTCTCGATGCATAGCAA
 
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JMFS064B11+           ACCTTTTGTAATGGAAACGCGAAGGCAGGAAAGAGCTGAGACTTACCTTTCTACCCCTTA
JMSF024N11+           ACCTTTTGTAATGGAAACGCGAAGGCAGGAAAGAACTGAGACTTACCTTTCTACC-----
JMFS104E10+           ACCT------ATGGAAACGCGAAGGCAGGAAAGAGCTGCGACTAAACTTTCTACCACTTA
                      ____________________________________________________________
consensus             ACCTTTTGTAATGGAAACGCGAAGGCAGGAAAGAGCTGAGACTTACCTTTCTACCCCTTA
 
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JMFS064B11+           CTGGAGCTGAACTCTCGATCTGTTGTCTCAGAGTTCTGGTTCTCCACTCGTCCAGAACAT
JMSF024N11+           -------------CTCGATCTGTTGTCTCAGAGTTGTGGTTCTCCACTCGTCCAGAACAT
JMFS104E10+           CCT---TTTGGCTCTCGATCTGTTGTCTCAGAGTTCTGGTTCTCCACTCGTCCAGAACAT
                      ____________________________________________________________
consensus             CTT---TTTGGCTCTCGATCTGTTGTCTCAGAGTTCTGGTTCTCCACTCGTCCAGAACAT
 
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JMFS064B11+           CGTCCACATGGTAGGAGAAGTCTTTGATATTTTCGATCCAGAGCTCGATGCCCTTTTCCT
JMSF024N11+           CATCCACTTCGTACGAGAAGTCTTTGATATCTTCGATCCAGTGCTTGATGTTGTTTTCCT
JMFS104E10+           CGTCCACTTGGTAGGAGAAGTCTTGGATATTTTCGATCCAGAGCTTGATGCCCTTTTCCT
                      ____________________________________________________________
consensus             CGTCCACTTGGTAGGAGAAGTCTTTGATATTTTCGATCCAGAGCTTGATGCCCTTTTCCT
 
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JMFS064B11+           TAATGCTTCTCTTCTCTGCATCATCCAGTACTTCCCTGATTTTCTCGAGCTTTGATGAGA
JMSF024N11+           TAAAGCTTCTCTTTTCTGCATCATCCAATACCTCCATGATTTTCTTGAGCTTTGATGAGA
JMFS104E10+           TAAAGCTTCTCTTCTCTGCATCATCCAATACCTCCCTAATTTCCTCGAGCTTTGATGAGA
                      ____________________________________________________________
consensus             TAAAGCTTCTCTTCTCTGCATCATCCAATACCTCCCTGATTTTCTCGAGCTTTGATGAGA
 
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JMFS064B11+           GGTTTGCGATCTCCTTCTCCACACCCAAAGTTCTTTTTAGCTCCTGGGCTTGGTGCTTCA
JMSF024N11+           GGTTTGTGATCTCCTTCTCCACACCCAGAGTTCGTTTTAGTTCCTGGGCTTGGTGCTTCA
JMFS104E10+           GGTTTGCGATCTCCTTCTCCACACCCAAAGCTCTTTTTAGCTCATGGGCTTGGTGCTTCA
                      ____________________________________________________________
consensus             GGTTTGCGATCTCCTTCTCCACACCCAAAGTTCTTTTTAGCTCCTGGGCTTGGTGCTTCA
 
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JMFS064B11+           GGATTTCGATCAGCTGTTCTACAACACTGGAGATGAGAGCGTCGGCCATGGTCGTTGACT
JMSF024N11+           GGATGTTGATCAGCTCTTCCACAACACTGGAGATGAGAGCGTCGGCCATGGTCGTTGACT
JMFS104E10+           GTATGTTGATCAGCTCTTCTACAACACTGGAGATGAGAGCGTCGGCCATGGTGGTTGACT
                      ____________________________________________________________
consensus             GGATGTTGATCAGCTCTTCTACAACACTGGAGATGAGAGCGTCGGCCATGGTCGTTGACT
 
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JMFS064B11+           CT                                                          
JMSF024N11+           CT                                                          
JMFS104E10+           CTGTAGTTGAAACGTACTTTGAGAGATGATAAGGTTTGCTAATTGATTAATTTGGTTTGA
                      ____________________________________________________________
consensus             CTGTAGTTGAAACGTACTTTGAGAGATGATAAGGTTTGCTAATTGATTAATTTGGTTTGA
 
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JMFS104E10+           AAATTTGATTATTAACTTATATATATATATACCACCATTGACTCAGTAGCCACCATTCTC
                      ____________________________________________________________
consensus             AAATTTGATTATTAACTTATATATATATATACCACCATTGACTCAGTAGCCACCATTCTC