Contig 004843:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS064B11Sequence621004843 (3)ref|XP_009796828.1|6e-40PREDICTED: putative disease resistance protein RGA3 [Nicotiana sylvestris]
JMFS104E10Sequence624004843 (3)ref|XP_009796828.1|5e-32PREDICTED: putative disease resistance protein RGA3 [Nicotiana sylvestris]
JMSF024N11Sequence644004843 (3)ref|XP_009796828.1|2e-43PREDICTED: putative disease resistance protein RGA3 [Nicotiana sylvestris]887011049 (2)ref|XP_009796828.1|8e-26PREDICTED: putative disease resistance protein RGA3 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS104E10+ GCATCAATTCTTGATGATCAGAGTGTGATGATG
                      ____________________________________________________________
consensus GCATCAATTCTTGATGATCAGAGTGTGATGATG
 
. : . : . : . : . : . :
JMFS064B11+ CAAATTTGAACTGATCTTTCTCTTTCGTAA
JMSF024N11+ CAAATTTGAACTGATCTTTCTCTTTCGTAA
JMFS104E10+ CTGCAGAAGTGTGTGTTATTGATGCATAATCAAATTTGAACTGATCTTTCTCTTTCGTAA
                      ____________________________________________________________
consensus CTGCAGAAGTGTGTGTTATTGATGCATAATCAAATTTGAACTGATCTTTCTCTTTCGTAA
 
. : . : . : . : . : . :
JMFS064B11+ TCCGATCAAGTGTTGAATCAAGTTCCTTTATTTTCTTGGCGATGTCTCGATGCATAGCAA
JMSF024N11+ TCCGATCAAGTGTTGAATCAAGCTCCTTTATTTTCTTGGCGATGTCTCGATGCATAGCAA
JMFS104E10+ TCCGATCAAGTGTTGAATCAAGCTCCTTTATTTTCTTGGCGATGTCTCGATGCATAGCAA
                      ____________________________________________________________
consensus TCCGATCAAGTGTTGAATCAAGCTCCTTTATTTTCTTGGCGATGTCTCGATGCATAGCAA
 
. : . : . : . : . : . :
JMFS064B11+ ACCTTTTGTAATGGAAACGCGAAGGCAGGAAAGAGCTGAGACTTACCTTTCTACCCCTTA
JMSF024N11+ ACCTTTTGTAATGGAAACGCGAAGGCAGGAAAGAACTGAGACTTACCTTTCTACC-----
JMFS104E10+ ACCT------ATGGAAACGCGAAGGCAGGAAAGAGCTGCGACTAAACTTTCTACCACTTA
                      ____________________________________________________________
consensus ACCTTTTGTAATGGAAACGCGAAGGCAGGAAAGAGCTGAGACTTACCTTTCTACCCCTTA
 
. : . : . : . : . : . :
JMFS064B11+ CTGGAGCTGAACTCTCGATCTGTTGTCTCAGAGTTCTGGTTCTCCACTCGTCCAGAACAT
JMSF024N11+ -------------CTCGATCTGTTGTCTCAGAGTTGTGGTTCTCCACTCGTCCAGAACAT
JMFS104E10+ CCT---TTTGGCTCTCGATCTGTTGTCTCAGAGTTCTGGTTCTCCACTCGTCCAGAACAT
                      ____________________________________________________________
consensus CTT---TTTGGCTCTCGATCTGTTGTCTCAGAGTTCTGGTTCTCCACTCGTCCAGAACAT
 
. : . : . : . : . : . :
JMFS064B11+ CGTCCACATGGTAGGAGAAGTCTTTGATATTTTCGATCCAGAGCTCGATGCCCTTTTCCT
JMSF024N11+ CATCCACTTCGTACGAGAAGTCTTTGATATCTTCGATCCAGTGCTTGATGTTGTTTTCCT
JMFS104E10+ CGTCCACTTGGTAGGAGAAGTCTTGGATATTTTCGATCCAGAGCTTGATGCCCTTTTCCT
                      ____________________________________________________________
consensus CGTCCACTTGGTAGGAGAAGTCTTTGATATTTTCGATCCAGAGCTTGATGCCCTTTTCCT
 
. : . : . : . : . : . :
JMFS064B11+ TAATGCTTCTCTTCTCTGCATCATCCAGTACTTCCCTGATTTTCTCGAGCTTTGATGAGA
JMSF024N11+ TAAAGCTTCTCTTTTCTGCATCATCCAATACCTCCATGATTTTCTTGAGCTTTGATGAGA
JMFS104E10+ TAAAGCTTCTCTTCTCTGCATCATCCAATACCTCCCTAATTTCCTCGAGCTTTGATGAGA
                      ____________________________________________________________
consensus TAAAGCTTCTCTTCTCTGCATCATCCAATACCTCCCTGATTTTCTCGAGCTTTGATGAGA
 
. : . : . : . : . : . :
JMFS064B11+ GGTTTGCGATCTCCTTCTCCACACCCAAAGTTCTTTTTAGCTCCTGGGCTTGGTGCTTCA
JMSF024N11+ GGTTTGTGATCTCCTTCTCCACACCCAGAGTTCGTTTTAGTTCCTGGGCTTGGTGCTTCA
JMFS104E10+ GGTTTGCGATCTCCTTCTCCACACCCAAAGCTCTTTTTAGCTCATGGGCTTGGTGCTTCA
                      ____________________________________________________________
consensus GGTTTGCGATCTCCTTCTCCACACCCAAAGTTCTTTTTAGCTCCTGGGCTTGGTGCTTCA
 
. : . : . : . : . : . :
JMFS064B11+ GGATTTCGATCAGCTGTTCTACAACACTGGAGATGAGAGCGTCGGCCATGGTCGTTGACT
JMSF024N11+ GGATGTTGATCAGCTCTTCCACAACACTGGAGATGAGAGCGTCGGCCATGGTCGTTGACT
JMFS104E10+ GTATGTTGATCAGCTCTTCTACAACACTGGAGATGAGAGCGTCGGCCATGGTGGTTGACT
                      ____________________________________________________________
consensus GGATGTTGATCAGCTCTTCTACAACACTGGAGATGAGAGCGTCGGCCATGGTCGTTGACT
 
. : . : . : . : . : . :
JMFS064B11+ CT
JMSF024N11+ CT
JMFS104E10+ CTGTAGTTGAAACGTACTTTGAGAGATGATAAGGTTTGCTAATTGATTAATTTGGTTTGA
                      ____________________________________________________________
consensus CTGTAGTTGAAACGTACTTTGAGAGATGATAAGGTTTGCTAATTGATTAATTTGGTTTGA
 
. : . : . : . : . : . :
JMFS104E10+ AAATTTGATTATTAACTTATATATATATATACCACCATTGACTCAGTAGCCACCATTCTC
                      ____________________________________________________________
consensus AAATTTGATTATTAACTTATATATATATATACCACCATTGACTCAGTAGCCACCATTCTC