Contig 004822:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS080H01Sequence627004822 (2)ref|XP_009624146.1|1e-80PREDICTED: L-arabinokinase-like [Nicotiana tomentosiformis]
JMSF041A20Sequence649004822 (2)ref|XP_009768366.1|3e-91PREDICTED: L-arabinokinase-like [Nicotiana sylvestris]686016168ref|XP_009762811.1|2e-78PREDICTED: L-arabinokinase-like, partial [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF041A20+                                                          TATCTGCCAGATT
                      ____________________________________________________________
consensus                                                            TATCTGCCAGATT
 
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JMSF041A20+           ATTGAGCGGTTTTGTATTCCTGCTGCCATTACATATTCAGCATAGATGAAATCCCAACTG
JMFS080H01+                                            TATTCAGCATAGATGAAATCCCAACTG
                      ____________________________________________________________
consensus             ATTGAGCGGTTTTGTATTCCTGCTGCCATTACATATTCAGCATAGATGAAATCCCAACTG
 
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JMSF041A20+           AAATTGGTGCAACAAACCGCAGGTATTCCAGCATTTGCCGCTGCTCGGCAAGCAACAGGA
JMFS080H01+           AAATTGGTGCAACAAACCGCAGGTATTCCAGCATTTGCCGCTGCTCGGCAAGCAACAGGA
                      ____________________________________________________________
consensus             AAATTGGTGCAACAAACCGCAGGTATTCCAGCATTTGCCGCTGCTCGGCAAGCAACAGGA
 
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JMSF041A20+           ACAACATCTGAAACCACAAAGTCAGCCTTGATAGATTTCAACCAATCAACTTCTGTGGCC
JMFS080H01+           ACAACATCTGAAACCACAAAGTCAGCCTTGATAGATTTCAACCAATCAACTTCTGTGGCC
                      ____________________________________________________________
consensus             ACAACATCTGAAACCACAAAGTCAGCCTTGATAGATTTCAACCAATCAACTTCTGTGGCC
 
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JMSF041A20+           AATATTTCTTCCCGAGGGACTACAGCTGTTTCAATGTACTTTTCAAGTGAAGCAAGACGG
JMFS080H01+           AATATTTCTTCCCGAGGGACTACAGCTGTTTCAATGTACTTTTCAAGTGAAGCAAGACGG
                      ____________________________________________________________
consensus             AATATTTCTTCCCGAGGGACTACAGCTGTTTCAATGTACTTTTCAAGTGAAGCAAGACGG
 
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JMSF041A20+           TCAACTGTCAAAGCATCTGCTTGAACAGCTCCACAGTCCAGCAGCACCTTTCGAATAAAT
JMFS080H01+           TCAACTGTCAAAGCATCTGCTTGAACAGCTCCACAGTCCAGCAGCACCTTTCGAATAAAT
                      ____________________________________________________________
consensus             TCAACTGTCAAAGCATCTGCTTGAACAGCTCCACAGTCCAGCAGCACCTTTCGAATAAAT
 
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JMSF041A20+           AGTTGCGGTGACTGTATCTCAGAAGTGTAAACATAGTTGGGAGCGCCAGTGACCACATGA
JMFS080H01+           AGTTGCGGTGACTGTATCTCAGAAGTGTAAACATAGTTGGGAGCGCCAGTGACCACATGA
                      ____________________________________________________________
consensus             AGTTGCGGTGACTGTATCTCAGAAGTGTAAACATAGTTGGGAGCGCCAGTGACCACATGA
 
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JMSF041A20+           ACTTCATGCCCAGCTAGAATGAGGTTACGAACAATCTCAACAACGCGAGTAGCATGCCCA
JMFS080H01+           ACTTCATGCCCAGCTAGAATGAGGTTACGAACAATCTCAACAACGCGAGTAGCATGCCCA
                      ____________________________________________________________
consensus             ACTTCATGCCCAGCTAGAATGAGGTTACGAACAATCTCAACAACGCGAGTAGCATGCCCA
 
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JMSF041A20+           AATCCATGTCCTGTCACATAGTACGCAAAAACCAATGGCTTCTTCGGTGAACCCATTCTC
JMFS080H01+           AATCCATGTCCTGTCACATAGTACGCAAAAACCAATGGCTTCTTCGGTGAACCCATTCTC
                      ____________________________________________________________
consensus             AATCCATGTCCTGTCACATAGTACGCAAAAACCAATGGCTTCTTCGGTGAACCCATTCTC
 
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JMSF041A20+           AGAACCCTAACAAATGCACAATGCGTTTCGGAAAACAAATCAGAAAGGGGATTTAAACGA
JMFS080H01+           AGAACCCTAACAAATGCACAATGCGTTTCGGAAAACAAATCAGAAAGGGGATTTAAACGA
                      ____________________________________________________________
consensus             AGAACCCTAACAAATGCACAATGCGTTTCGGAAAACAAATCAGAAAGGGGATTTAAACGA
 
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JMSF041A20+           CCGGTAGAGCTTAGGAGATCCTGTCGTGTGCATATGGCTACTTATAGTAAAATTTNGTAT
JMFS080H01+           CCGGTAGAGCTTAGGAGATCCTGTCGTGTGCATATGGCTACTTATAGTAAAATTTCGTAT
                      ____________________________________________________________
consensus             CCGGTAGAGCTTAGGAGATCCTGTCGTGTGCATATGGCTACTTATAGTAAAATTTCGTAT
 
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JMSF041A20+           CTGAATCAGTTACCAATTACCATGTTTGAATCAAT                         
JMFS080H01+           CTGAATCAGTTACCAATTACCATGTTTGAATCAATATCCAAATCAGTGGATAAAGATTGA
                      ____________________________________________________________
consensus             CTGAATCAGTTACCAATTACCATGTTTGAATCAATATCCAAATCAGTGGATAAAGATTGA