Contig 004819:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF019J18-                                                         AGAGAAGAAGATG
rJMSF048D09-                                                         AGAGAAGAAGATG
                      ____________________________________________________________
consensus                                                            AGAGAAGAAGATG
 
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rJMSF019J18-          ACATATTTAACAGGGGATGTTCATAAGAGATATAGAGCACGATAATAGAAGAAAATTTGT
rJMSF048D09-          ACATATTTAACAGGGGATGTTCATAAGAGATATAGAGCACGATAATAGAAGAAAATTTGT
                      ____________________________________________________________
consensus             ACATATTTAACAGGGGATGTTCATAAGAGATATAGAGCACGATAATAGAAGAAAATTTGT
 
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rJMSF020J18-                                               AAGTCATCATCAACTCTGAGGAG
rJMSF019J18-          AATATTTAAAAAAATAATAAAGAAAAATGAAGAGTCAAAGTCATCATCAACTCTGAGGAG
rJMSF048D09-          AATATTTAAAAAAATAATAAAGAAAAATGAAGAGTCAAAGTCATCATCAACTCTGAGGAG
                      ____________________________________________________________
consensus             AATATTTAAAAAAATAATAAAGAAAAATGAAGAGTCAAAGTCATCATCAACTCTGAGGAG
 
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rJMSF020J18-          GCCGGCTGGAGCCNGGCGGATTANGAGGAGCGGANCTAGAANAAGAAGAAGAACCACCGC
rJMSF019J18-          GCCGGCTGGAGCCAGGCGGATTAAGAGGAGCGGAGCTAGAAGAAGAAGAAGAACCACCGC
rJMSF048D09-          GCCGGCTGGAGCCAGGCGGATTAAGAGGAGCGGAGCTAGAAGAAGAAGAAGAACCACCGC
                      ____________________________________________________________
consensus             GCCGGCTGGAGCCAGGCGGATTAAGAGGAGCGGAGCTAGAAGAAGAAGAAGAACCACCGC
 
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JMFN017A17+             CCGGAAAGCAGTTGAGCTAAAGTGCTCATGGCGCGGACTTGCATCTCTAAAGCCGCTA
rJMSF020J18-          CNCCGGAAAGCAGATGANCTAANGTGCTCATGGCGCGGACTTGCATCTCTAAAGCCGCTA
rJMSF019J18-          CACCGGAAAGCAGTTGAGCTAAAGTGCTCATGGCGCGGACTTGCATCTCTAAAGCCGCTA
rJMSF048D09-          CACCGGAAAGCAGTTGAGCTAAAGTGCTCATGGCGCGGACTTGCATCTCTAAAGCCGCTA
                      ____________________________________________________________
consensus             CACCGGAAAGCAGTTGAGCTAAAGTGCTCATGGCGCGGACTTGCATCTCTAAAGCCGCTA
 
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JMFN017A17+           TATAATCAGTGGCTTCTTCTAGAATCACAGGCAGCGGCTCCTTCCGGCAGCCAGGAACGA
rJMSF020J18-          TATAATCAGTGGCTTCTTCTAGAATCACAGGCAGCGGCTCCTTCCGGCANCCNGGAACGA
rJMSF019J18-          TATAATCAGTGGCTTCTTCTAGAATCACAGGCAGCGGCTCCTTCCGGCAGCCAGGAACGA
rJMSF048D09-          TATAATCAGTGGCTTCTTCTAGAATCACAGGCAGCGGCTCCTTCCGGCAGCCAGGAACGA
                      ____________________________________________________________
consensus             TATAATCAGTGGCTTCTTCTAGAATCACAGGCAGCGGCTCCTTCCGGCAGCCAGGAACGA
 
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JMFN017A17+           GCCGCCCGAGAACACGAGCCTTTCTCTGTACAGTCGGTAAGTTTTTTGTTTTCAGCCGGA
rJMSF020J18-          NCCGCCCNANAACACGANCNTTTCTCTGTACAGNCGGTAAGTTTTTTGTTTTCANCCGGA
rJMSF019J18-          GCCGCCCGAGAACACGAGCCTTTCTCTGTACAGTCGGTAAGTTTTTTGTTTTCAGCCGGA
rJMSF048D09-          GCCGCCCGAGAACACGAGCCTTTCTCTGTACAGTCGGTAAGTTTTTTGTTTTCAGCCGGA
JMSF048D09+                      ACACGAGCCTTTCTCTGTACAGTCGGTAAGTTTTTTGTTTTCAGCCGGA
                      ____________________________________________________________
consensus             GCCGCCCGAGAACACGAGCCTTTCTCTGTACAGTCGGTAAGTTTTTTGTTTTCAGCCGGA
 
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JMFN017A17+           GGATACTTACTCTCGATTTCTTCGGCACCCGGCTCTTCCCGTTAGCCGCCGCAACCACCA
rJMSF020J18-          GGATACTTACTCTCGATTTCTTCGGCACCCGGCTCTTCCCGTTAGCCGCCGCAACCACCA
rJMSF019J18-          GGATACTTACTCTCGATTTCTTCGGCACCCGGCTCTTCCCGTTAGCCGCCGCAACCACCA
rJMSF048D09-          GGATACTTACTCTCGATTTCTTCGGCACCCGGCTCTTCCCGTTAGCCGCCGCAACCACCA
JMSF048D09+           GGATACTTACTCTCGATTTCTTCGGCACCCGGCTCTTCCCGTTAGCCGCCGCAACCACCA
                      ____________________________________________________________
consensus             GGATACTTACTCTCGATTTCTTCGGCACCCGGCTCTTCCCGTTAGCCGCCGCAACCACCA
 
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JMFN017A17+           TTCTCTGCCTTCTGTTGTGCTTCTTCATGAACTTGAGCCTCAGCCTGTTAGTGAGGATGG
rJMSF020J18-          TTCTCTGCCTTCTGTTGTGCTTCTTCATGAACTTGAGCCTCAGCCTGTTAGTGAGGATGG
rJMSF019J18-          TTCTCTGCCTTCTGTTGTGCTTCTTCATGAACTTGAGCCTCAGCCTGTTAGTGAGGATGG
rJMSF048D09-          TTCTCTGCCTTCTGTTGTGCTTCTTCATGAACTTGAGCCTCAGCCTGTTAGTGAGGATGG
JMSF048D09+           TTCTCTGCCTTCTGTTGTGCTTCTTCATGAACTTGAGCCTCAGCCTGTTAGTGAGGATGG
                      ____________________________________________________________
consensus             TTCTCTGCCTTCTGTTGTGCTTCTTCATGAACTTGAGCCTCAGCCTGTTAGTGAGGATGG
 
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JMFN017A17+           CGCGGCTCCACCTCGTGCGTCCTTTGGCGGCTACCGCCAGAACTCTATCTGCGACTTCGT
rJMSF020J18-          NGCGGCTCCACCTCNTGCGTCCTTTGGCGGCTACCGCCAGAACTCTATCTGCGACTTCNT
rJMSF019J18-          CGCGGCTCCACCTCGTGCGTCCTTTGGCGGCTACCGCCAGAACTCTATCTGCGACTTCGT
rJMSF048D09-          CGCGGCTCCACCTCGTGCGTCCTTTGGCGGCTACCGCCAGAACTCTATCTGCGACTTCGT
JMSF048D09+           CGCGGCTCCACCTCGTGCGTCCTTTGGCGGCTACCGCCAGAACTCTATCTGCGACTTCGT
                      ____________________________________________________________
consensus             CGCGGCTCCACCTCGTGCGTCCTTTGGCGGCTACCGCCAGAACTCTATCTGCGACTTCGT
 
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JMFN017A17+           GCACGGCTCTGCCCCCCTTCGTTCCTGACGACGAATTCAACCGGACTTCTCGGAGCGCTT
rJMSF020J18-          GCACGGCTCTGCCCCCCTTCGTTCCTGACGACGAATTCAACCGGACTTCTCGGAGCGCTT
rJMSF019J18-          GCACGGCTCTGCCCCCCTTCGTTCCTGACGACGAATTCAACCGGACTTCTCGGAGCGCTT
rJMSF048D09-          GCACGGCTCTGCCCCCCTTCGTTCCTGACGACGAATTCAACCGGACTTCTCGGAGCGCTT
JMSF048D09+           GCACGGCTCTGCCCCCCTTCGTTCCTGACGACGAATTCAACCGGACTTCTCGGAGCGCTT
                      ____________________________________________________________
consensus             GCACGGCTCTGCCCCCCTTCGTTCCTGACGACGAATTCAACCGGACTTCTCGGAGCGCTT
 
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JMFN017A17+           TGAACAGCTTGGAAGAGTACACTTGTTGTTGAGCTTCGGATTTCCATTCAGCGGTTGAGC
rJMSF020J18-          TGAACAGCTTG                                                 
rJMSF019J18-          TGAACAGCTTGGAAGAGTACACTTGTTGTTGAGCTTCGGATTTCCATTCAGCGGTTGAGC
rJMSF048D09-          TGAACAGCTTGGAAGAGTACACTTGTTGTTGAGCTTCGGATTTCCATTCAGCGGTTGAGC
JMSF048D09+           TGAACAGCTTGGAAGAGTACACTTGTTGTTGAGCTTCGGATTTCCATTCAGCGGTTGAGC
JMFS075H04+                                             TTCGGATTTCCATTCAGCGGTTGAGC
                      ____________________________________________________________
consensus             TGAACAGCTTGGAAGAGTACACTTGTTGTTGAGCTTCGGATTTCCATTCAGCGGTTGAGC
 
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JMFN017A17+           CGTTATT                                                     
rJMSF019J18-          CGTTATTGTTTACGTCCACAGCTTGAGCACTAGGAATTTGGCTTCTCTTCTTCTTCCTTC
rJMSF048D09-          CGTTATTGTTTACGTCCACAGCTTGAGCACTAGGAATTTGGCTTCTCTTCTTCTTCCTTC
JMSF048D09+           CGTTATTGTTTACGTCCACAGCTTGAGCACTAGGAATTTGGCTTCTCTTCTTCTTCCTTC
JMFS075H04+           CGTTATTGTTTACGTCCACAGCTTGAGCACTAGGAATTTGGCTTCTCTTCTTCTTCCTTC
                      ____________________________________________________________
consensus             CGTTATTGTTTACGTCCACAGCTTGAGCACTAGGAATTTGGCTTCTCTTCTTCTTCCTTC
 
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rJMSF019J18-          TCCTAGCCGCTGCTCTACTTTCGGAGCTCATCAC                          
rJMSF048D09-          TCCTAGCCGCTGCTCTACTTTCGGAGCTCATCACCGGATTCGAC                
JMSF048D09+           TCCTAGCCGCTGCTCTACTTTCGGAGCTCATCACCGGATTCGACATCAGAGCCGATGCCA
JMFS075H04+           TCCTAGCCGCTGCTCTACTTTCGGAGCTCATCACCGGATTCGACATCAGAGCCGATGCCA
                      ____________________________________________________________
consensus             TCCTAGCCGCTGCTCTACTTTCGGAGCTCATCACCGGATTCGACATCAGAGCCGATGCCA
 
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JMSF048D09+           TTAACGCACTACCGTTTGATCCGATCAGATGTAGTATTCCAATTTCCAACCAATCGGTTG
JMFS075H04+           TTAACGCACTACCGTTTGATCCGATCAGATGTAGTATTCCAATTTCCAACCAATCGGTTG
                      ____________________________________________________________
consensus             TTAACGCACTACCGTTTGATCCGATCAGATGTAGTATTCCAATTTCCAACCAATCGGTTG
 
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JMSF048D09+           AATCACCAACTCCTGAT                                           
JMFS075H04+           AATCACCAACTCCTGATCGATTCAAAAGGAGTGTGTATAGTATGAATTTGTGTTTATATA
                      ____________________________________________________________
consensus             AATCACCAACTCCTGATCGATTCAAAAGGAGTGTGTATAGTATGAATTTGTGTTTATATA
 
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JMFS075H04+           TATATATATATATATATATATATAATGCACACTTAAAAATGAAGAGATGGCCCGTAGATA
                      ____________________________________________________________
consensus             TATATATATATATATATATATATAATGCACACTTAAAAATGAAGAGATGGCCCGTAGATA
 
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JMFS075H04+           ATTAGAATGATAGATTCACATACTGATTCGAAGAAACGAGGCTCAAAGCAATTCAAGATT
                      ____________________________________________________________
consensus             ATTAGAATGATAGATTCACATACTGATTCGAAGAAACGAGGCTCAAAGCAATTCAAGATT
 
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JMFS075H04+           GACAGACGCGGTTATCTCTTAATCAAGCACGTATATATATAAATCAAAATTAACTTGCAA
                      ____________________________________________________________
consensus             GACAGACGCGGTTATCTCTTAATCAAGCACGTATATATATAAATCAAAATTAACTTGCAA
 
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JMFS075H04+           AATAAAGTCGCACTGGATATGAAAAGTACCTGATAGAAGCAGAAGGTGAAGCCATTATTT
                      ____________________________________________________________
consensus             AATAAAGTCGCACTGGATATGAAAAGTACCTGATAGAAGCAGAAGGTGAAGCCATTATTT
 
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JMFS075H04+           CAGAAGTTCTGCCTTGTTTCAGCACTGTGCTTGTGCGTGTGTATACCAGAGCGAGAACGA
                      ____________________________________________________________
consensus             CAGAAGTTCTGCCTTGTTTCAGCACTGTGCTTGTGCGTGTGTATACCAGAGCGAGAACGA
 
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JMFS075H04+           GAGAGAGAGAGGCGTTGGAATGTGGAGAGACTCCCGGCGGGGCGTGTTTGGGAGGTGGTG
                      ____________________________________________________________
consensus             GAGAGAGAGAGGCGTTGGAATGTGGAGAGACTCCCGGCGGGGCGTGTTTGGGAGGTGGTG